RNA id: XM_007252517.3



Basic Information


Item Value
RNA id XM_007252517.3
length 790
RNA type mRNA
GC content 0.43
exon number 4
gene id mrpl35
representative True

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18523754 ~ 18528689 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CGTTTTTGATTTTTGCATCTTTGTGCTCTCCGCTCTGTTTGTCCAAACTGCAGACCGTAGTTTAGGGTCGCCGTGCAGTTTGAAGATGGCGGCCACCTTGGCTAGAGGTCTCACAGGTCTGCTGAGACCTCTGACAGTGTTGGGAAGAAGCAGCATTTCCCAAGCAGCTGGACTCACCCAGCTGTCTCCTCGGTTCTCCACCCTCATTCAGAGACAAACTGGCTTTAAAACTCTGCCTGCGATTGAAGGCCCTTGCTCCCAACAGCACAGTGTGCTCCATCGTGTCACACCACTCATCCCATCATTGATGCTTCAGCCCACTAGGAATCTAACATACTATAGTTTGAAAAAAGGCAAGAGGAAGACAGTGAGGTCTGTGGTGAAGAGGTTCCTCCGATTGCACTGTGGTCTGTGGGTGAGGAGAAAGGCTGGATACAAGAAGAAGCTTTGGAAGAAGGGACCAGTCCGAAAAAAACGTTTAAGGGAACATGTGTTCTGCAATAAGACTCAGTgcaaaaaactagacaaaatgaCCACGTCTTTTTGGAAAAGAAGAAACTGGTACCTCAATGACCCATACCAGAAATACCACGATCGAGTCAacttcaaaatgtaaaacctgtattagcatattagcattGTACTGGTATATAGACATAAAGAAAATGCTTGttgttaaaactgtttaaaaataccATCAATGTTTTGGTGTTAACACACAGTAAAAAATGTCCATTTCTTAAGAtcagtgtaaatgtaatttCCAAAATAAACTGTTTCATCTGTTACA

Function


GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02916 RP-L35, MRPL35, rpmI; large subunit ribosomal protein L35

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109865 lncRNA upstream 23043 18447388 ~ 18500711 (+) True G81539
TU109866 lncRNA upstream 24876 18475117 ~ 18498878 (+) True G81540
TU109881 lncRNA upstream 52183 18470407 ~ 18471571 (+) True G81547
TU109863 lncRNA upstream 81043 18441069 ~ 18442711 (+) True G81537
TU109771 lncRNA upstream 246564 18276863 ~ 18277190 (+) True G81466
TU109895 lncRNA downstream 16780 18545469 ~ 18550207 (+) True G81558
TU109957 lncRNA downstream 176126 18704815 ~ 18706282 (+) True G81600
TU109962 lncRNA downstream 185516 18714205 ~ 18717199 (+) True G81602
TU109963 lncRNA downstream 185516 18714205 ~ 18715897 (+) False G81602
TU110103 lncRNA downstream 336987 18865676 ~ 18865988 (+) True G81701
XM_007252518.3 mRNA upstream 2807 18511622 ~ 18520947 (+) True LOC103033848
XM_007252519.3 mRNA upstream 13285 18503191 ~ 18510469 (+) True LOC103034157
XM_007252520.3 mRNA upstream 13285 18504234 ~ 18510469 (+) False LOC103034157
XM_007252521.3 mRNA upstream 26715 18481679 ~ 18497039 (+) True zfyve28
XM_022672481.1 mRNA upstream 54119 18460123 ~ 18469635 (+) True LOC103035760
XM_007252514.3 mRNA downstream 22332 18551021 ~ 18567654 (+) True hspa4l
XM_022672859.1 mRNA downstream 39979 18568668 ~ 18579258 (+) False plk4
XM_022672858.1 mRNA downstream 40841 18569530 ~ 18579571 (+) True plk4
XM_007252512.3 mRNA downstream 52180 18580869 ~ 18632555 (+) True LOC103031945
XM_022672860.1 mRNA downstream 52603 18581292 ~ 18632555 (+) False LOC103031945
XR_002650340.1 other upstream 2807 18511622 ~ 18520947 (+) False LOC103033848
TU109873 other upstream 59658 18460130 ~ 18464096 (+) False LOC103035760
TU110107 other downstream 401549 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 1137047 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 1144438 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3828955 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 4701741 23230430 ~ 23231318 (+) True G82609

Expression Profile