RNA id: XM_007252519.3


Basic Information

Item Value
RNA id XM_007252519.3
length 1852
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103034157
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18503191 ~ 18510469 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTTCTGAGTCTAAAAATAAAGGACATCTTCCAGCACAGAGCTGCTGCAGAAAACCATCTCAGGCAAGTCCGACTCACACGATAGCCACACATGATGTGATGCTGGAGACGGGGCGTGGCCAGAGGGATGATTGATCCCCTGATGCAGCAGCTGCTGAAAGGGAATACCTTGGCTTGCAGAAGGACTGGAAATGAAGTCATTAGCAGCAGCTGGCTCCCCGGTAGGCTGCCTCTTTCTGCTCTTACAACCCTTTTCTCCGCATGTTCACGCTGTTGATCACTCTACCTCCGTCCACTCTGCTGAGATGCTTGTAGATGGATGATGGGATCTGCAGAGGCTTTATATATTATACCATAAACAAGGACCTGCtgcaaaaatgaataaaatcaacCATCAACAAACGGCCAATAATGTTGAGACGCAGTCTGTGGAGAGGATGAAGGCTAAGGATCCACCAACTCCATCCAAGAAGCCTAAATCTCCCAAGCCTCAAAATGCGGTCACCATCGCTGTGTCGTCTCGGGCGCTCTTCAACATGGAGTTTGAGCAGCAGATTTTCGAGCAGAAGGGAATGGAGGAATATCTGAAATACCAGCTCGATCATGAAACAGAGCCGTTTGCACCAGGACCTGCTTTCCCTTTCATTAAGGCTCTGGAATCGGTCAATGAGCAGCTGAGAAACCTCTACCCCGACAGTGAAGAGCTCTTTGATGTGGTTCTGATGACCAACAACCACGCGCATGCTGGAATTAGGCTCATCAACTCAATCAATCACCACAATCTGTTCGTGGAACGCTTCTGTATGACCGGCGGTAACAGTCCAATTGGGTATCTGAAAGCGTACCACACTAACCTGTATCTGTCTGCTGATTCATCGAAAGTGAGAGAGGCCATAGAGGAAGGGATTGCTGCAGCCACCatgttttcagcagagaaagTCACGCAAGTCTCAGAGACACAGTTGCGAGTGGCCTTTGATGGAGATGCAGTGCTTTTCTCAGATGAGTCAGAGAGAATCTACAAAACCCAGGGCCTGGAAAAATTCTTTGAACATGAAAAGACCTATGAAAACAAGCCCCTTGATCATGGACCACTTAAAGGATTTTTGGAAGCTCTGGGAAAACTGCAGAGGAAGTTCTATGCCAAAGGCCACCGTATAGACTGTCCCATCCGCACTTATCTGGTGACGGCTCGGAGTGCAGCCAGTTCAGGTTCCCGGGCGCTGAAGACCCTCCGGGCTTGGGGTCTTGAAACAGATGAGGCCCTTTTTCTGGCTGGAGCACCAAAAGGCCCAATGCTAGCTAAGATCAAGCCCCATATTTTTTTCGATGATCAGATGTTCCATATAGAAGGAGCTGCAGAGCTGGGCACTGTGGCCGCTCATGTTCCATATGGAATTGCCCAAAAGATGCCACCAAAGAAAACAAAGGACATTTGACTCATTCAAGATTGATTTACTTcccaaattaaaatgaatataattaaGTTACTTATGGATTGTTTTCAGTTGAAAAATATCTCTTATAAACTGTGGTGTTGAATCTAGCCCTCTGGACTGAAAGTGGTAAACTTGGGTTTGAACTgatattttagtaatatttagcAGAAATTGACTGATCTATCGTTCCCATTGCTTGTACCTAGACCTTTCTTAAGCCATATTTACTGTGTATTCTAATGGTTTACTAAATACATTGAGCCTATTATGCTTACTAAGGGCTTATAATGGCAGTACACAGTCTTCAGGTactacaaaaaaagaacaaaacactgtgcctctctttttttttttttttttacaaaaaagtcAATAATGCCTGCATTAGAAGTGTGGATTGCTGACACAGGAT

Function

GO: NA

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109865 lncRNA upstream 2480 18447388 ~ 18500711 (+) True G81539
TU109866 lncRNA upstream 4313 18475117 ~ 18498878 (+) True G81540
TU109881 lncRNA upstream 31620 18470407 ~ 18471571 (+) True G81547
TU109863 lncRNA upstream 60480 18441069 ~ 18442711 (+) True G81537
TU109771 lncRNA upstream 226001 18276863 ~ 18277190 (+) True G81466
TU109895 lncRNA downstream 35000 18545469 ~ 18550207 (+) True G81558
TU109957 lncRNA downstream 194346 18704815 ~ 18706282 (+) True G81600
TU109962 lncRNA downstream 203736 18714205 ~ 18717199 (+) True G81602
TU109963 lncRNA downstream 203736 18714205 ~ 18715897 (+) False G81602
TU110103 lncRNA downstream 355207 18865676 ~ 18865988 (+) True G81701
XM_007252521.3 mRNA upstream 6152 18481679 ~ 18497039 (+) True zfyve28
XM_022672481.1 mRNA upstream 33556 18460123 ~ 18469635 (+) True LOC103035760
XM_015605081.2 mRNA upstream 63102 18436289 ~ 18440089 (+) True LOC103032442
XM_022672852.1 mRNA upstream 91369 18349742 ~ 18411822 (+) False LOC103046791
XM_007252518.3 mRNA downstream 1153 18511622 ~ 18520947 (+) True LOC103033848
XM_007252517.3 mRNA downstream 13285 18523754 ~ 18528689 (+) True mrpl35
XM_007252514.3 mRNA downstream 40552 18551021 ~ 18567654 (+) True hspa4l
XM_022672859.1 mRNA downstream 58199 18568668 ~ 18579258 (+) False plk4
XM_022672858.1 mRNA downstream 59061 18569530 ~ 18579571 (+) True plk4
TU109873 other upstream 39095 18460130 ~ 18464096 (+) False LOC103035760
XR_002650340.1 other downstream 1153 18511622 ~ 18520947 (+) False LOC103033848
TU110107 other downstream 419769 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 1155267 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 1162658 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3847175 22357644 ~ 22358135 (+) True G82488

Expression Profile