RNA id: XM_007252531.3


Basic Information

Item Value
RNA id XM_007252531.3
length 2653
RNA type mRNA
GC content 0.41
exon number 9
gene id ahsa1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18335100 ~ 18342283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCGGCTTCCAGTAATTTCCACGAGCAGTAAAAGCGGAGGCGCGTGAACAGACCAGACGCTTCCAGAAGTCGCGTGAGAGCCGCTCGCAGTGCGCTCTGCTTCACGCGCCGCGACAGTTACCTGCATCCGGGCCACAGTATGGCGAAGTGGGGAGAAGGAGACCCTCGGTGGATCGTGGAGGAAAGAGCGGACGCCACGAATGTCAACAACTGGCACTGGACTGAGAGGGACGCTACAAACTGGTCTTCAGAGAAGTTAAAAGAGTTGCTTGTGGGATTGAGTGTAGAGAACGATGATGGCAAGTGTGAGATCACTGAGGTGTCAAAGCTGGAAGGTGAGGCTTCCATTAACAACCGCAAAGGAAAGCTCATCTTTTTCTACGAGTGGAACTTAAAGGCCAAATGGAAAGgGATATCCACTTCAGGAATCAAGTATAAAGGAAATATTGAAGTTCCAAACCTATCAGATGAAAATGATATGGATGATCTTGATATCAGTGTGAGCCTTTGTAAAGACGAGCCTGACACGCCACTGTTTGACCTGATGAAGAAAGAAGGAGCTGATAAAGTCCGCTTGGCACTTGACAGCTATGTGGGTCTTCTCAAAACAGAGTTCACACAGGGTATGATCTTGCCTACAGCCAACGGTTTGAGCAAGCAACCGACATCTCAAGCAAAAGTCAAAATGGACAAGACTCAGATTGGTTCTAGCAGCACAGCTGCTCCCATTTCTACTGGAGTTAAGATTCCTACCTGTAAGTTCTCACTAAGGGACACATTTCTCACCTCACCAGAGGACCTCTACAGAGTCTTCCTCAACCAGGAAATGGTGCAGGCATTTACGCATACTGCTGCAGTGGTTGAGCCGGAAAAGGGAGGAAAATTCCGCCTTTTGGGTGGGAATGTATTTGGAGAGTTCCAAGAGCTGGTTTCTGAGGAAAAGATAGTTATGAAATGGAGATACAACACATGGCCAAGTGAGCACTATGCGACAGTGACCCTGACTTTTACAGACAAAGGAAATGAAACGGAGCTGAAGATAGAGTGTCGGGCTGTGCCTGAGAGTGAGGAGGAACGCACGCGAGAGGGCTGGCAGAGGTACTATTGCCAGGCCATCAAACAGACGTTTGGTTATGGCGCACGACTTTGCTGAGCTTCAGCTACACCATTCgctactttttatttgtttttctctggTCCACATGTACAAATGAGAGCAGTGGAATGTGACTCTACTGAGTAAGAGACTTAGCATTGCTCCTTCCTCTACATGTTtctttcagatttgggtttttgAGGCttacaaaaaaatccaaacatcacaaaagaaaatgacaaatgaataggaaatacagagagagaaggacTAACTGGAGGCTTGAGTCATGTATTGATGTGTTATCTGcatatgtgtgtaataaattaaagttttattgtAGCATGGTAACTTGTCCATTTGGCACTCTACCCTGGCTTGGAGAGGTACAGCGTTAAATggtgcctttttttctttttggaactaaacttttttactttctaTCAAAAGTTATGTCCCCCACTTAAGGATTTCATGGAGGTTTGGGAAAAGAAGAATAAACAGAAACTCCTATACCACTTCAGTAAACAATTTCTTGCCTATGTGTATGAGATGACATTGTATTTTTTAGCAGAGGTTGGTTTATTTCTGTAAGTccatcatatcatatatcatttCATGACTGTTGTAAATGCTACTGCTACCTTCCTGCAAATCCTTGAATCAAGCTTGAAATACCCAATGACCTTCATATTGTTTAGGGAAAAAATTTCCACATGTCTCGAAGACTCTGTATCCCGCACAGTTTTGGTATTATTCTGCCCCCTGAACATCTGATCCACCTAATGATAATTGGCTGATAAGCTGCATTAAGATGTATTGACAAGGCCTGTCACGATTTTTGTTTGAAATAATTATGATAAAATTGTCACTTCAATCTGATGTTAATTTCACTGACCATTTAATGCCACTGATATGAAGATACAATACCATAATGGTGCAATTACACCCTATCAGAGGACAATGAACCTTTATCTGTTAATAAGAGatgtatacatttttctttaccTCTTGTTATTGATGCATTGGCCATTGTGTGACtgtccaaaatatttttttaaacatgcaagTAAACACAATGGGTGATTAAGGCAAATTACTAATGTAATGGCTATTTATTGTACaatgaatttaaattattttgacaGGCCTAGGTATAGCTAAAACCATGCAGTGCAGTAGGTCCCCATAACTAGGGTTTGACATGCTCTGGACTAGAccatattaaaatgtgtgtcaagaGGCACAAGTGGGCATTCCTTCGTTAGActgcttttatatttacttcagGCTTGAAGTACTGTGTTGAATTCCACTGTagggttttgtatttttttttctccacaaatGAATGGCTCCCAGGATTATGCTCAAATAATTCATGACTTGttcattaatgcagaaaatatgtataattatttttcttgCTTTAAAGGACGACACGCTGTAGGTTTTTAGAAATCcgattttatttattgtccatAAGCACCACATTTTGTAAACATGTGAATTTACATCACCcactttcttaaaataaaattgccCTGGCATCATCTA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0032781 positive regulation of ATPase activity biological_process
GO:0051087 chaperone binding molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109771 lncRNA upstream 57910 18276863 ~ 18277190 (+) True G81466
TU109770 lncRNA upstream 68616 18266219 ~ 18266484 (+) True G81465
TU109762 lncRNA upstream 124759 18209785 ~ 18210341 (+) True G81460
TU109754 lncRNA upstream 197894 18136612 ~ 18137206 (+) True G81452
TU109747 lncRNA upstream 240002 18076372 ~ 18095098 (+) True G81446
TU109863 lncRNA downstream 98786 18441069 ~ 18442711 (+) True G81537
TU109865 lncRNA downstream 105105 18447388 ~ 18500711 (+) True G81539
TU109881 lncRNA downstream 128124 18470407 ~ 18471571 (+) True G81547
TU109866 lncRNA downstream 132834 18475117 ~ 18498878 (+) True G81540
TU109895 lncRNA downstream 203186 18545469 ~ 18550207 (+) True G81558
XM_007252537.3 mRNA upstream 19810 18308247 ~ 18315290 (+) True LOC103038992
XM_007252538.3 mRNA upstream 29006 18284577 ~ 18306094 (+) True eprs
XM_007252539.3 mRNA upstream 29012 18284577 ~ 18306088 (+) False eprs
XM_022672845.1 mRNA upstream 298026 18027307 ~ 18037074 (+) True cmpk2
XM_007252202.3 mRNA upstream 432262 17897957 ~ 17902838 (+) True iah1
XM_022672849.1 mRNA downstream 7459 18349742 ~ 18411822 (+) True LOC103046791
XM_022672852.1 mRNA downstream 7459 18349742 ~ 18411822 (+) False LOC103046791
XM_022672850.1 mRNA downstream 7459 18349742 ~ 18411822 (+) False LOC103046791
XM_022672853.1 mRNA downstream 49498 18391781 ~ 18411822 (+) False LOC103046791
XM_015605081.2 mRNA downstream 94006 18436289 ~ 18440089 (+) True LOC103032442
TU108900 other upstream 2751769 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 3153702 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 3533263 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 3606301 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 4382902 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 117847 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 117847 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 117847 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 117847 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 117847 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile