RNA id: XM_022672922.1


Basic Information

Item Value
RNA id XM_022672922.1
length 8479
RNA type mRNA
GC content 0.53
exon number 31
gene id LOC103041063
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21194708 ~ 21279138 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTCGGTAACAAAGTGAGGCGGCGGAGCGGAGCGTGGGGAGCGGAGGCGTGGAGCCCGGGCTGCTGGAGATGAACTTTATTCGTTTGCGGCCATAACTGTTTTAGTTCCGCAGGACTTTTGGATAGATTTACACTCGTTTATAAAGTTGGGGGTGAATTTGTCCGGCCGCCGCTGAATTTTCCTGGGTTTTGGTTTCGCCTCCTCGCTTTTCGCAGGGCTGCTGGTTCTGGTTTATGGGTGAGCACTTTGTTGTGCGGGACCCTCAGCAGGAGGAAATGGGGCTGTAAAAGTTCAGCGCTGCTCTCTCTCACAGCGCCCCGCTCGAGTGGATGGAAAGTACGGGGCTTTTGGGGAGTTTCTGGAGTGTTTTTAAACTTGTTATGTTTGTTACTGTGAATCCggctgaacagcagcagcagcacagcattattattgtttagcagcagcagtagcgtGGAGTCTGGAACGCCTGGGAATGTGAGCACCTCGATTCTGGAGCTAAAAGTGAGCTAAAAGTGTTGAAGCGCTTCTGGAGTATCTTATCCTTCAGCAGAAATGGATCTTACCCTGTCTGAACTGATGTCCAACTTCATGGAGTCCCCGCTGGTGGTCTGGGTGAAGACCTTCGGCCCACTGTCTTCCAACTTGGACGACAAGCTCTCCATGTTTATGGAGCTAGTGGATGGGGTCTTCCTTCATAAGATCATGACCCACATAGATCCAAATCCAACAAACCACCGGGTGAACAAGCAGGTGAACAACGACGTAAACCTGAGGATCCAGAACCTCAGCACTGTTATCAGACACATCAAAAACTATTACCAGGAGaatctccagcagctcattttgATGACCTTACCCAATGTGCTGACCATCGCCAAGGATCCTTTGTCAGGAAAGAGTATGGAGGAGATGAAGAggctgctactgctgctcctAGGCTGCGCTGTTCAGtgtgagcGTAAAGAGGAGATCATTGAGAAGATTAAGCTGCTAGACATTGAAACGCAAGCAGCCATCGTCTCCCATATCCAAGAGGTAACCCACAACCAGGAGAATGTTCTGGACCTGCAGTGGCTGGAAGTGGGGGAGCTGCCTGCTGAGGAGCTGGACCCTCTCTCCCGCAACATGGCCTTTCACCTCCGCAAACTCATTGATGAGCGGGATGAGTGCTCAGAGCTGGTCTTGGAGCTGACCCAGGAGAGGGATTATCTGCAATCCCTGCAGCCCCCCAGCCCTGTGAACTTCTCCAGCCCTGAGAGATCCTCCCAGCTCGCTGTGCTTTCAAAAGAAGACCGCCAGCACCTGGCAGTGGAGCTCGCCGATACCAAGGCTAAACTGCGCCGATCTCGACAAGAACTAGAGGAGAAGACGGAGCATTTGATAGACACCAAGAATGAATTAGACAGGCTGGATGTGGAGATGCAGAAGTTGAAGCAAGAGAACACTCAGCTGCTGGCCGAGGCACGGTCAGTTCGAGCATATCGGGATGAAGTGGATGCTCTGAGGGAGCGTGCTGGGAGAGTAGACAGACTCGAGACAGAACTGGCTCGGTTCAAAGAGAAGCTGCACGATGTTCACTTCTACAAGGCCCGCGTGGAGGAGCTCAGAGAGGACAATATGACTCTGCTCGAGACTAAGGCCATGCTGGAGGAGCAGCTGAGCACAGCTAGGGGGCGCTctgacaagctgcatgagctaGAGAAGGAGAACCTCCACCTGCGCTCCAAACTGCACGATATGGAGATTgATCGGGACAGTGATAAGAAGCGTCTAGAGGAGCTGCTGGAAGAGAACATGCTACTGGAGATCTCACAGAAGCAAAGCATGAACGAGTCTGCTCACCTGGGCTgggagctggagcagctttcTAAGAACAATGAGGtcaatgaagCTCGCAAATCGTTTGTGTTTGAGCTGAATGAGTCAGCCTCCAGCCGGTTGCTGAAACTGGAGAAGGAGAATCAGAGCCTGCAGAGCACCATTCAGGAGCTGCGTGAGGCATCACTCAGCTTAGAAGAAGGACAGCTCCATGCCATGGAACTGGAGAGGGAGAACCAGGGCCTCAGCAAGAAGATTGAGCGTCTGCAGACCCAGCTGGATCAGGAGAAGCAGACCACACAGGACATGGAAAGCTTGGGAGAAGAGCTACTCAAGGAAAAgcagaaactggagaaaacccTGGAGACTGTGCAGGCAGATAAAGACAAACAGaTCTCTGAgctggaaaaagaaaaggagcATCTGAACCAGGCAGTCAGTTCCCTGCGGAAGCGAGCTCAGGTGGACAGCGAGGCCCGTGTTCGGGAGGTAGAGACGGAGAACCGTGTCCTCCACCAGACTATCTCTGAGACTGGAGGAAAGCTGGCGCGACTCGAGGCTGAGAAGCGTCAAGCCACCAAGGAGCTGGAGGGTCTTCGGGAGCGTGGAGAGCGCTGTGTGGAGCTGGAGCGAGAGGTGGCGCGACTGGAACGCGGGCGAGAGCAGCTGCAGCGGGAACTGGCTTCTCTCAGGATCGCCAGCGAGCGCACCGAGGCCCTGGAACGCGAGAACGCCACCTTGGAGCAGGACAACCGGCGGCTGAAGAAGCAGGCAGATGCAGCGCAGAACGCTAACGTGCGCCTGGCCACTTTAGAGAAGGACCGTCGGcaactggaggaggagaacctCGAACAGCGACGTGCTCTGGACGGTCTCCGGCCGGCTGCTGCTCGCCTTGCACAGCTACAGCTGGAGCACAGTGAGCTGGAGCGCGAGAGACAGGAACTTCAGGGCACCCTGGAGGAACTCAGAGCCCAGGCCAAGCGCTGCGAGAGGCTGGATCTCAGCTGCAACAGCCTGAGTCAGGAGAACCAGAGACTGCAGAAAAGCCTGGACAGCAGTTCTGCCAAAATCCAGGACCTAGAGGGTCGGCTGCGAGAGTCCGAGAGCCAGAGCAAGGAGGTCCAGAAGGAGCTGGTGGAGGTGAGGCAGGCAGGGAGCCGAGCAGAGGAGGCTGAGAAGCAGAGGAGAAGCATGGAGCAAGAGTTGGGccaggcagagaaagagaggaagcaACTGGAGAAAGAGGCCCACAGGCTGAGGAGGCAGCTGGAGGCGAAGGAGGCAGCGCTGGAGGAAAGCTCGCTCAGGCTCAGCAGCATGGAGAAAGAGGGCACAGCTCTGAACAGGGAGCTTGCACGCCTCAGAGAAGCTGCCGGGAGGGTCAAGGAGCTGGAAAAGGATAACAAAGACCTGCATAAGCAGGTCACCATCGACAAGAGGACCCTGGCCACTCTCCGAGAGGAGCTGGTGAATGAGAAGCTGAGGGTGCAGCAGCAGTGTAACGAGCTGGAGAAGCTCAGTCATGAGCTGGAGAAGATTGGCCTGAACCGGGAGAAGCTGCTGCAGGAAGAGCACAGCTGTGAGGACAAATGGACCAGtaaatataaaattctGGAGACCAAGATCGAGTCAACACTAAAGAAGACTCTGGAACTGAGGGAGGAGAAGATCCAAAGTCTGGAGTCTCGTCTGGAGGAAAGCAGCAGCTTGAACCAGCAGCTACGCACTGATCTCACTACTGTGAAGAAAACACTGGAGGCTCTGAGGCAGAggcaggaggaggaggctgCCCACTCTGAAATATCCCAGAAATCTGTGGAGCAGGGCCGGTGTGGTTCCAGCCAGGAGAAATGGGAGACGGAGCAGAGAGAGGCCACCGCTGAACTCCTCAAACTCAAAGATCGACTGATTGATGTGGAGAAGAATAATGCGGCTCTGCAGACAGAGAAACACCTCCTGAAGGAGCAGTTGAAGCAGCTGGACTCTCAGAACTCGCAGCTAAACGCTCAGACACTGGCTCTGCAGAAACAGGCTGCAACACTGCAGGAGCAGAACACCGCCCTGCACAAAGAGACGGCCAAACTACAGGTGGAGAACTCCACGCTGAGCTCTCAGAATGCATCTCTGCTCTCTCAGTATGGAGCTCTGCAGACTCAACTGCAGACTGCGGAGGCAGAAGCAGAGGCGCAACAGAGGCAGAAGGAGGAGGTGCGGGCAGCCCGGGACAGCGTCACCCACGATCACGAGCGTCTGCTGGCTGTTCACGAGAGACAGGCCGCTGAGTACGAACAGCTCATCTCCCAGCATGCCACACTGAAGAGCAACCAGAGAGCACTGGAACAGGAGCATAAAGCACTGGAGAACAAgtATGTGCTGCTGCTAAAGCAGAAGGATGCTATGGAGGCACTGGAGGCTTCTTtgcagaaagagagggagagtttGGGAGAGGAGATCCGCAAGAACACTCTGATCCTGGAGGAGAACCGAGGCCTGAGAGAGGACATGGACAGgttgtctcacacacactcgcagcTACGGCAGGAGTATGATGGGCTGCAGCATCAGACCAAGGAGCTAAAGACGTCTCTGAACGAGTCTCAGTTGGAGCTGAACCGCTGGCAGGCACGGTTTGACCAGCTGAAGGAGCAGCACCAGGGTCTGGACATCTCAATGACCAAACTGGACAACCACTGTGAGCTGCTGACCCGGCTGAAGGGGAacctggaggaggagaaccACCACCTCCTGAGCCAGATCCAGATGCTGAGCCAGCAGAACCAGACGCTGCTGGAGAGAACCATGGAAAGCAAAGAACTCTACCACGAGGAACAGAAGCAGTAcatTGATAAGCTGAATGCATTACGAAGGCAGAAGGAGAAACTGGAGGAGAAGATCATGGATCAGTACAAGTTCTATGATCCAACTCCTAAAAAGAGGAGTCACTGGGCAGGAGCTAAAGCCATCGCCAAGCTGATCAAGCCCAAGAAGGACACTTCCCGCGAGAGACCAGAAAGCTCCCGAGAGAGAATTCGCAGTGCGCCAGACATCCCTCTGCCAGACATCCCTGTCCTCTTAGACTGCCCTGACAGCAGCCCACCCCTTCCACCCCCTCCACTACCACCCCGCCAGAACCGCCTCAGCCTGGACTCACCAGGAAACCACTCAGTAGAGGAAAACCACGTCCAGTCCCCGGTCTTCTCCCCACCACCCAACAACCGAGGACCAAGTGACAGCAGCATCTCCAGAGGCAGAGAGCTGTACCGACCAGCAGGGGGCAGCAGTGAGAGTGTGAATGGATATGAGGATCTGGCCTTTAGGAGGAGAGCCATTGAACCAGGAGCCTCCTGTTCAACCCCGCTGAACCATAATTCCCACAATGCTCCAGGCTTCACACCCCCAAGCTCACGACCAGGACGCAGGCCTAAAGGATTAATCTCAGAGGAGGACCTGCGCCTGCACTCCCTCGATGCTGGCTTTGGGTCTGGTGGTCATGGAAACGCAGGTCACAGGCCCGGGTCTGCTGATTTCAGCCGCAAcacctccagcagcagctctcCAGTCAACTCCAAAGGCTCTCTGGAGCGTCTGCAGGGCCGTTCAACCAGCCTCTCCAGTGATGATGTGGTTGGGCTCAGTCATGAAGGATCCCGCCTCAGTCAGTCCTCTCTGCTGCCTCGGAGCTCCACCCTGCCCTGTGAAACTCCACCCACTCAGCGCTCCACCCTGCGCCCCTCTCGCATCCGCCCTGCTTCACCTGGCAGTGAGATGGTGACCCTGAAGGAGTTCCTGCAAGAAAGCAATGTGCTCTCACCCCCCACTGTGCAGACAGACAGTCGGGAAGACCTGATGACTGATTATTTCACCAGAGCGAGTCGGCCAGCGCCTCTCAGGGATGGAGCCAAAACCCCTACCAGCTATGTGGTCCCCACGGTCAAAACAAGCTCCTCTGGCGCAGATGGGCGAGCCTCCAAACCAGGACAAAGTGTCAAGCCCAGCATTCGCCCCTTGGAAGCTTCTACCCCCTCTTCTCAGTCTCAGACGCTCCCTAATCGTGGAACTGGGAGCCGCCCCTCGTCCCTGCAGCACTCAGGATCTCGTGGAGGGGCCGGtttaagcagcagcagcttgagCCGCACCTTTAGCCTGGCTTCAGCTGACCTTCTCAACTCAAACGGTCCAGACAGCTACCGAGCTGAGGGGGGATCACCTGGTCAGGCCGAAGGTTTGGTGAGGCGGCCCCGGGACAGGCCACAATCGGCTAGGCCCCTGAGTGGGGATCCTACTCACCTGTCTGTGGATCCCCGGCGCCTTTCCCTGGCTCAGCCAAAAGATGAGCCCCTCCTGTCTGCCTCCCCACAAGCTGACTGGGGCTACGGAAACAGTGTAGGGCGAACAGGAGCAACAGCGAATCGCTCTGGGACATCGCAGGGCCGCTCAACCCACCAACATCACCGTGGGGAGGTGGCTATGGTCACCCCAGTGCGGGCCGTCTCCGCCCTCAGGCTGGAGGAGGTGGAAGAGCATCGAGAGCCCAGGCAGGCTGAGCCCAGCTCTCTTAAGAAGTCGGACTGTGTTGCAGAGGAGCGGCCGATAAGCACTCCAGCCTCCCCAGACCCCAATAATGACCCGCAGACTGTGTGGTATGAGTACGGCTGCGTGTAAGCCCAGGCACTCCTCGTTAGCATGGCTTTTGGCTTTGATGTAGAGGCTCAGGTGGGGAAGGGATGGAGGAAATCCTCCTTTATGTGCCCGGACATCATGATACAATTAGATCAATTAATCTGACCTTTCATGTGGTCAGGAAAAGCCCTCTGGTTTACATGTCCTTGATCTGAGCTTTGAGGAGCAGGGACTAGCACTACAACACTGCAGCCAGCTCTGCCCAAAGTGTATTTGGGGTCAGTGATGGTTGTTGACTTTTGCCTGATAGAACTGCAaagcaaatacatttaaaagccCCCACAAGCACCCGTGAAACTTACTGAAGCAACAAAGCAGAACATGCTTGGCCAGTCTCTGCAAACCCATCCAGTCCTGTGTTCAGGACTCGTACACAGCTTGGTGAAGGAATGTGTTTGGGAATGGACACGGCttaagaatgtatttttttgtttttttcccctctcctcTCATCTCCTCCCCTATCGAACACCATTGATTTCCTGCAGCTCTCTGTGGACAGGCAGGGCCTGCCAGCTCGGTTTCTATTCTGAATGCGCAAATCAAACATTGGGCTTTTGCGTGAGGGACCGCTCCCTGGATAATCACAGAGTAATTACAGTATCCATCTTTAGGAGGCGGAGGGGACAGCGTGAGTCCATCATTCAGGCAGCCACGGTGGGATTGGTTACTGGAAATGGCTACTCGCTTTCGCTCCCTGCTGACAAACCTAGTGCTCAAGCTCCTTTCCGCTGCCACGGGTTACCACCTATTTGCTGAGCGACCGTGCTATTGGCTCTGGGGTATGCAAATGGAAGAGAAGACTCAtgatgatggagagagagagatggaggggaaCAAAAAGAGAGATGAGATGAAGATTTAAGAGAGCAGGACCTAACTGTTGAAGTGATGAATGTTGATACGAAGCAGTAAATTcgcaaactttttgtttttgtttagttttactcCATTTTATGCTCTCAAGGGCATTTATAGTTATAGCTATAGACATGGTGTGTCATCAGGCATTTAACTTTTCAACACTGTGggttctttttatatatatatatgtaaatatgttgaTTGAGCACTATGCCAGCAGGAGAAACAGAGTTTAAACTAAGGTCTAAACTGGAGTCTTAACACTGGACATAATCTCCACAGCTTGACAAGATCAAGTACCAGCCTATTTTCTCATcgggttttatttttattgcaaatGAGTTGGTATCTATTGTACCAGTAACACTGTAAAATTGTTCCAATGTTCAGAAGTACTGGTTTATTTATTACCTCCCAAATAAAGACACACAGAAAATGTGTCAGAATGTGACACCCCCTcaaatattaaattgttttgTGGTTTTGGAGTGTCCACAGTGGTGACTGTTCATTCACGGCACTGTATAATTAATTTATGCAGATTTTCCCCAAGTGGTTCCCCTGATATGTTTAACAAAACATTAGTCCATTAGTCCTTTTTTAGCAGTGGTGCTCTTCCTCATTAACATTGCCATAATGTGAAGGCTCCAGTGGAAAAGAGATGGAGGAATTTCTTCCGTGCCTAGACATCATGCAATTAGCTTAATTAGTCTGACCTTTCATGTGACGAGGAAAAAGCCCTCTGGTGTACTTGTTTATCAGGGCTTTAAGGAATGGTCACGTCCACCAAAGCAGTTAGTTAAGGTGAGGTTATTAGTAAGTTCACTAAGTTCTTTACGTCTTCCTCAGCAGACCCGTGAGAGTGCACTTATTGTAATGGGGGCTTCACTCAAACATGGCTACCCAGTTACACAACGTATACCCAACAATAACATGCGCAATTTTCaaacactactacaacaaaGACTTGATTGTTGACGTGTGATGTTTTGATTAGTCGCCTAATAAGACGTGTGATGGCTGTGATTGGTTCTAGTGTTTGTCATTTTGTATAGCAGAAGCTGTTGTCCAAAAACTGAACTCTTTGTAATAAAAACTTTCCAAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110609 lncRNA upstream 168904 21024135 ~ 21025804 (+) True G82091
TU110608 lncRNA upstream 170850 21023004 ~ 21023858 (+) True G82090
TU110606 lncRNA upstream 172136 21022070 ~ 21022572 (+) True G82088
TU110607 lncRNA upstream 174846 21019092 ~ 21019862 (+) True G82089
TU110591 lncRNA upstream 246266 20947596 ~ 20948442 (+) True G82073
TU110743 lncRNA downstream 112024 21391162 ~ 21394714 (+) True G82193
TU110744 lncRNA downstream 112024 21391162 ~ 21420420 (+) False G82193
TU110745 lncRNA downstream 119548 21398686 ~ 21399884 (+) True G82194
TU110801 lncRNA downstream 208874 21488012 ~ 21488214 (+) True G82234
XR_002650347.1 lncRNA downstream 212563 21491701 ~ 21506791 (+) True LOC111193214
XM_022672919.1 mRNA upstream 5440 21141773 ~ 21189268 (+) True LOC103047712
XM_022672920.1 mRNA upstream 5440 21156143 ~ 21189268 (+) False LOC103047712
XM_022672918.1 mRNA upstream 57801 21081464 ~ 21136907 (+) True stard9
XM_007252549.3 mRNA upstream 115086 21060695 ~ 21079622 (+) True cdan1
XM_007252553.3 mRNA upstream 235317 20941708 ~ 20959391 (+) False mbip
XM_007252546.2 mRNA downstream 3465 21282603 ~ 21296256 (+) True gpr68
XM_022672931.1 mRNA downstream 241769 21520907 ~ 21672140 (+) True ralgapa2
XM_022672936.1 mRNA downstream 635088 21914226 ~ 21926373 (+) True tmem87a
XM_007253814.3 mRNA downstream 648428 21927566 ~ 21948191 (+) True vps39
XM_007253813.3 mRNA downstream 676870 21956008 ~ 21994947 (+) True galnt16
TU110179 other upstream 1521070 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 1528661 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2263954 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 2673761 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 2730612 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 1078506 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1951292 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 2596301 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 2596301 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 2630544 23909682 ~ 23920698 (+) True G82811

Expression Profile