RNA id: XM_007253783.3


Basic Information

Item Value
RNA id XM_007253783.3
length 1557
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC103036290
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22686731 ~ 22692160 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGTGTGTGAAAGTATTTGCTCCTCCTGTCCAGTGAGAGGCGCCCGAGCTCTGAACACAGCCGGGCAGAAACAGCAGCGAATAATAAAGCACCATGGGTCAAAACCAGAGTGGAGGACATGGGCCTGGAGGCGGAAAGAAAGACGATAAAGATAAGAAAAAGAAGTATGAGCCTCCAATCCCCACTAGAGttggaaagaagaaaaagaggacaAAGGGGCCTGATGCTGCTAGCAAGCTGCCTTTAGTCACCCCCCACACACAGTGCAGACTAAAGCTACTGAAGCAGGAGAGGATCAAGGATTATCTTCTGATGGAGGAGGAGTTTATCAGAAACCAAGAACAGATGAAGCCACTGGAGGAGAAACAGGAGGAAGAGAGGTCAAAAGTTGATGATCTGAGGGGTACACCGATGTCAGTAGGAACCCTTGAAGAGATCATTGATGACAACCACGCCATAGTGTCTACGTCGGTCGGCTCAGAGCACTACGTTAGCATCCTGTCCTTTGTAGATAAAGACCTTCTTGAACCAGGCTGTTCTGTTTTACTAAACCACAAGGTACATGCAGTGATTGGTGTGCTGATGGATGACACGGATCCTTTGGTCACTGTGATGAAAGTAGAAAAAGCCCCTCAGGAAACGTATGCTGATATTGGAGGACTGGACAACCAGATTCAAGAGATCAAGGAGTCTGTTGAGCTTCCTCTTACACACCCGGAGTATTATGAGGAGATGGGAATAAAACCCCCTAAAGGAGTCATTCTCTATGGACCACCAGGCACAGGAAAGACCCTGTTGGCTAAGGCTGTGGCTAATCAGACATCTGCCACATTCTTGAGGGTGGTGGGCTCAGAGCTGATTCAGAAGTACCTGGGTGATGGTCCCAAACTGGTCCGAGAGCTCTTCAGAGTGGCAGAGGAACATGCTCCTTCCATAGTCTTCATTGATGAGATTGATGCAATAGGAACAAAGAGGTATGACTCAAATTCTggtggagagagggagattCAGAGGACCATGCTGGAACTCTTGAACCAACTGGATGGATTTGATTCCCGTGGAGATGTTAAGGTTATCATGGCTACTAACCGAATAGAGACTCTTGACCCTGCATTAATTCGTCCAGGAAGAATCGATCGCAAGATAGAATTCCCGTTGCCAGATGAAAAGACCAAGCGCAGAATTTTCCAGATCCACACAAGCAGGATGACTGTGGCTGATGACGTAACGCTGGATGACCTTATACTGGCTAAAGATGATCTTTCAGGCGCTGATATAAAGgCCATTTGCACAGAGGCAGGTCTTATGGCCTTGCGTGAGCGGAGGATGAAGGTGACGAATGAGGACTTCAAGAAGTCCAAAGAGAATGTTCTGTACAAGAAACAGGAAGGGACCCCAGAGGGCCTCTATCTTTAACTCCGCATGGCCTGCCAGGCTCCTGCCCTTCCaaactaaaaacacattttttttttatgttacgtTTACTTCTGTTTGAGCCAGCTGTTTTTTCACTCTTgtgcaaataaaagtatttcattTCCAGAGTATCTGTTAAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111213 lncRNA upstream 134942 22549865 ~ 22551789 (+) True G82515
XR_002650283.1 lncRNA upstream 277696 22393995 ~ 22409035 (+) True LOC111193141
TU111186 lncRNA upstream 317775 22366240 ~ 22368956 (+) True G82493
TU111178 lncRNA upstream 330645 22355641 ~ 22356086 (+) True G82487
TU111167 lncRNA upstream 401390 22285063 ~ 22285341 (+) True G82476
TU111288 lncRNA downstream 435793 23127953 ~ 23194290 (+) True G82579
TU111292 lncRNA downstream 471853 23164013 ~ 23165063 (+) True G82583
TU111297 lncRNA downstream 512655 23204815 ~ 23205444 (+) True G82588
TU111308 lncRNA downstream 516335 23208495 ~ 23208799 (+) True G82596
TU111319 lncRNA downstream 533605 23225765 ~ 23226910 (+) True G82606
XM_022672943.1 mRNA upstream 23604 22638733 ~ 22663127 (+) True tonsl
XM_022672482.1 mRNA upstream 48938 22627304 ~ 22637793 (+) True edrf1
XM_007253788.3 mRNA upstream 92374 22591569 ~ 22594357 (+) True LOC103037751
XM_007253795.3 mRNA upstream 551434 22130946 ~ 22135297 (+) True tmem179
XM_015607013.2 mRNA upstream 558590 22111114 ~ 22128141 (+) True LOC103041179
XM_007253777.3 mRNA downstream 18922 22711082 ~ 22844378 (+) True akap6
XM_007253775.3 mRNA downstream 165684 22857844 ~ 23154585 (+) True npas3
XM_007240478.3 mRNA downstream 550011 23242171 ~ 23248849 (+) True srp54
XM_015603404.2 mRNA downstream 550011 23242171 ~ 23248849 (+) False srp54
XM_007240480.3 mRNA downstream 558500 23250660 ~ 23267862 (+) True sec23a
TU111179 other upstream 328596 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3013093 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3020684 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 3755977 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 4165784 18511622 ~ 18520947 (+) False LOC103033848
TU111323 other downstream 538270 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 1183279 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 1183279 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 1217522 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 1447229 24139389 ~ 24142232 (+) True G82853

Expression Profile