RNA id: XM_007253807.3


Basic Information

Item Value
RNA id XM_007253807.3
length 3779
RNA type mRNA
GC content 0.50
exon number 10
gene id numb
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22000613 ~ 22046430 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCAGGACCAGCGGACGGAGGGAGTGAAGCAGGTGAAGCCGCGGCTCGGGGCTCGGAGCGCTGGATTTCGGGGACGTTTACCGAGCTAACCACATTACATGTTTCATCTTGTCTCGTACATTTGGAGCTCAAGAGACATTGACCCCTTCTGACTGTGTTTTGGGATAAGCCGGGGCTGCTTTACTGTGCGTGTTAAACAGGAGGAGGCTGAGCCATGAATAAACTACGGCAGAGTTTCCGCCGCAAGAAAGATGTGTACGTGCCTGAGTCCAGCAGGCCGCACCAGTGGCAGACAGATGAGGAGGCAGTGCGCAGTGGAAAGTGTAGCTTTGCAGTCAAGTATCTGGGCCATGTGGAGGTGGAGGAGTCTCGAGGCATGCACATCTGTGAAGACGCAGTGAAGAGGCTGAAGACGGCAGGAAAGAAGGCAGTAAGGGCTGTACTCTGGGTATCTGCTGACGGCCTGAGGGTTGTAGATGACAAAACAAAGgatTTGATTCTGGACCAGACAATAGAGAAGGTGTCATTTTGTGCTCCTGACCGGAACTTTGAACGGGCGTTCTCCTACATCTGCAGAGATGGCACCACCCGGCGCTGGATTTGCCACTGCTTTATGGCCATTAAAGATTCAGGCGAGCGTCTGAGCCATGCAGTGGGCTGTGCGTTTGCAGCATGTCTAGAGCGGAAGCAGAAGCGAGAGAAGGAGTGTGGAGTCACAGCCACTTTTGACGCTAACCGTACCACGTTTACCCGCGAAGGCTCCTTCCGAGTTACCACGGCAACAGAACAGGCTGAGCGAGAGGAGGTCATGCGGCAATTACAGGATGCCAAGAAAGATTCAGAAGGCGTCACTGTTACCCCTGGCAACAACACAGTGATCCCGGCCACAGTGtcctctccttcttcttccCCTCCCCTCACCATGGGCCCTCAGGAGTCCAACCCCCATGCCATCCCACGCCGCCATGCCCCTGTGGAGGCGCTGGCACGTCAGGGATCCTTCCGCGGCTTCCCGGCCCTCAGCCAGAAGACCTCACCATTCAAGAGGCAGATGTCACTGCGCATGAATGATCTGCCCTCCACCATGCAGCGCAAGTCTGACTTCCCCATCAAAAACACAGTGCCGGAGGTAGAAGGTGAGGTGGACAGCATCAGTTCTCTCTGCACTCAGATTACATCAGCCTTTAGCGGCCCTCCTGAGGACCCCTTCTCCTCAGCACCCATGCCcaaacccacctcctccccacaGTCCCCTGCTGCACCAGTTAATGGCTCAGCTCCTGCCTTTCCTGCTCCTGCTGTCACTGTCACTTCTGCTGCTAACCTACCGACCCTGCCACCCCCACTGCCTGCCAGAGAAACTAACCCATGGTCCAAGACCCCTGCTCCAACACATGCAGGGGGTGACTGGCCCAGTCCTACACCTGCAGTGGTGGCTCCTCCGGCTGCAGTCACACCTCTCACAGTCCCTGTGGCCTCTCATAAGCGAACCCCATCTGAAGCAGACCGCTGGTTGGAGGAGGTTTCCAAGTCTGTACGAGCCCAGCAGCCTGGAGGCAGGACCGCCACTCCCCCCAGCCAGCAGCCGTTCACCGCACCCATACCTGTCCCCATGGCTCCTCCTGTCCCCATGGCTCCTCCTGCCCCCGTAGCCTTCATGCCTCCAATGCCTACTGCTGTGCCCGCCCTGCCCCCACACCAACCCGCCTTCCACGCCCAGGCACCAGCTTCCTATCCAATGTCCAATGGGCTCCCCTACGGCCAGCCAAGTGTGCCCGTGGTCGGCATCACACCTTCTCAAATGGTGGCCAATGTTTTTGGTTCGGCTACACAAACCCAGCCGGTGCCAGTGCCTGCGCCTGTTCCTCAAACACACACGTTGCAGCCCTCGCCGTTCTCTACTCCACCTTTGGCGCAGCTGGATGCTCGTGGTGTGGGCAGTCCGTTTGGCAAACCTCCCTTGCCTCCAGCAGCAAATCCACACCTGTTTCAACCACCCAATGGTAATGCCACATTCAACGGTGCAGACAACTGGGCAGCTCCTGCATCATCAGCGCCTCCCCACCCACCACAGGCTGATGCCTTTGAGGCCCAGTGGGCCGCCCTGGAGAGCCGCTCAAGGCAGCGCACCAGCCCATCACCCACAAACCCCTTTTCAAGCGAGCTCCAAAAGACCTTTGAGATCCAgctgtaaagaaaagaaaatgtactGTGGGGTGGGCGAATCAGAATGCTGGCATAGACACATGAAGGAGAAAATATATGGATGGTGGATTATGGGGAGGGACTAAACCAGAGGCAGACCCCTTTGACACTCGCACCACTTTAGCCCTCAATCTCTGTCTCATTTCCTCATTTCCTTGCTATCCGTCAGTCTGTGTCTGTCTACTGTTAAGTATGAGTTAAGGAGACGGCACAGGGAAAGGAAGGTACTTCAATGAAATTCGCTGAAGCCACAGTAGCATGGACGTGGGGGTGAGGATGGTGGGGACTTAGTGATGCTCAGCTACCATTTGTTCACTCTGTCTGGTGTAACTCTGGATTCCACAAGATTAAGGTGAAATGTGGATGAAGAGCTGATGATGCCtccttgaagaaaaaaaatccagcctgcTTTGGTAACAGAACCCCTTTACattttcacgtttttttttccaatccaGCCTCCATCTCCCCAAAGCCCAGCTCACAGCGCCCCCTAGCCTAGTGGTGCTGAACGACTGACTGCTCCTCCCATCGGAAGAACAGAGCACTGAGAGAAGGACTGAGCTTCAAGATTTGAGAGGTTTTCATAAAACTTCCTAATCAGAAGAACAACCGAGAGAATgccaaaatctttatttttatgcattaagtatattttaaatagcttTGGAATATAACAGAGAAGTTGTAAGTAATCTTGCCAAAGGTGCAGGCTACAGTGGAAATGATTTTGTGTGTATACAGGAAATgagcatatattatatagatatatctagagaaatggaaaatatatatatattcattattaaacACATTGAGCTCAAGGTATAACTCATGTGTTGTATAAAGAGAGACTGAGTAAAGGgaggttgtttttgtttttatttttgtttttatttttgtcttattgCCGTATATATAACATCCCATTTTGGATGTGCATCCCTCTGTAAATAATAATCCATTGCAACTACAATCATCACAGACTCAGCGATGGAATGGGAGATCGATCAGTGCTCTCATTCTTTATCTCTGGtggtttattttatcattttgtaCTATAGTGCTCAGTatcatgatttatttttgtttcactgCCTACATAATTGAATGTTTtagggttttgtttttttagggggggcttttaaaacttattttaacaCTATTGACAATGTCATCTCCAGCCActtgattttgttttattttttctttaatgaagATATCTCTGCACATTGCACAAGCACTATTGTAGTTGATTCGGCAGTTAAGGTGAGAACGGTCAGTGTGCTGCACTGGTGAGCTATAATGTTGACAGACAACTGAGGTTTACCAGAGATCTCCCTGAAATTACCTGTGGTTTTAAACTGGTTGctgtgggggagggggggagtCAAGGCGTTATTGCAGTGTCTCTTCTTTAAATCGGTCCTGTGGAGGCatttggttttgttttagttgtttgttttatttctcctCATTTTGTaagtatttcattattttattccaCTTCTTTCCAGAAAAAATAGGTCTAAAAGATTGAATAAAATGATGGTGGTGGAGGACTACAGTGAAA

Function

GO:

id name namespace
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0016323 basolateral plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110979 lncRNA upstream 119612 21880537 ~ 21881002 (+) True G82336
TU110993 lncRNA upstream 121873 21878055 ~ 21878741 (+) True G82349
TU110989 lncRNA upstream 130720 21868379 ~ 21869894 (+) True G82345
TU110952 lncRNA upstream 211674 21787174 ~ 21788940 (+) True G82311
TU110892 lncRNA upstream 279236 21720629 ~ 21721378 (+) True G82270
TU111046 lncRNA downstream 28112 22074542 ~ 22079050 (+) True G82383
TU111124 lncRNA downstream 92066 22138496 ~ 22141716 (+) True G82438
TU111156 lncRNA downstream 188073 22234503 ~ 22234891 (+) True G82465
TU111167 lncRNA downstream 238633 22285063 ~ 22285341 (+) True G82476
TU111178 lncRNA downstream 309211 22355641 ~ 22356086 (+) True G82487
XM_007253813.3 mRNA upstream 5667 21956008 ~ 21994947 (+) True galnt16
XM_007253814.3 mRNA upstream 52423 21927566 ~ 21948191 (+) True vps39
XM_022672936.1 mRNA upstream 74241 21914226 ~ 21926373 (+) True tmem87a
XM_022672931.1 mRNA upstream 328474 21520907 ~ 21672140 (+) True ralgapa2
XM_007252546.2 mRNA upstream 704358 21282603 ~ 21296256 (+) True gpr68
XM_007253812.3 mRNA downstream 1184 22047614 ~ 22055411 (+) False exd2
XM_007253811.3 mRNA downstream 1189 22047619 ~ 22055411 (+) True exd2
XM_007253796.3 mRNA downstream 35257 22081687 ~ 22103651 (+) True ubr1
XM_015607013.2 mRNA downstream 64684 22111114 ~ 22128141 (+) True LOC103041179
XM_015607014.2 mRNA downstream 64684 22111114 ~ 22128141 (+) False LOC103041179
TU110179 other upstream 2326976 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 2334567 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 3069860 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 3479667 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 3536518 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 311214 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1184000 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 1829009 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 1829009 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 1863252 23909682 ~ 23920698 (+) True G82811

Expression Profile