RNA id: XM_007253813.3


Basic Information

Item Value
RNA id XM_007253813.3
length 3557
RNA type mRNA
GC content 0.47
exon number 15
gene id galnt16
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21956008 ~ 21994947 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgctactgctgctgctgctggagtggGGATGTGCGCTCGGTCCGAGGAGCCTGCAGCCACAGCGCGTGCACGCTAGAGCGCGGCGCGAGGCAGGGCATCAGCGGGCTGCAGCCGCGGAACAGAGCGGACAGGAGGAGCTGACCCGACCCCCGCCAGCATCGCACAGGGCCCGCGAGCCCTCCCTATGGACCCAGCATGCGCAGGATCAGGGCCAACGCCATCGCCATCCTCACGGTCGCCTGGATCCTGGGCACCTTCTATTACCTGTGGCAGGACAACAAGCCTTCTGCGGCGGCTCAGCCGCGCGCCACCGGGGGGAAGAGCCACGGGGGGAAGGCTGGAGGCGGGATGCTGGAGCTGCACCGGGAGGACAGGACCATCCCGCTGATCgTTACCCACCCTCCGCGGGGAGAGCAGCAGGGGCAGCTGTTGGGCACTTTTGATGAGAGAGCCTATTTAGCCAGTAAGCAGCTGAAAGCTGGAGAGGATCCATACAGAGAGCATGCTTTCAACCTGCAGGAAAGTGACAGACTGGGCAGTGAAAGGGCCATTAGGGACACTCGACACTACAGGTGTGCCTCGATGACTTTTGACCCTGACCTGCCGTCCACcagcatcatcatcaccttCCACAATGAAGCTCGTTCCACGCTCCTGCGTACCATTAAAAGtgTTCTCCTCAGAAGTCCGCCCCACTTGATACAGGAGATCATTCTCGTGGATGATTTCAGCTCTGACCCTGAGGATTGCCAGCTGCTCTCCCAGATCCCAAAGGTGCGGTGTCTCAGAAATGATCGGCGAGAGGGTTTGATCAGGTCTCGAGTCAGGGGAGCCAGCGCTGCCTCTGCCTCTATCCTCACCTTCCTGGATAGCCACTGTGAGGTCAACACAGACTGGCTACAGCCCATGATCCAGAGAGTTAAAGAGGACCACACTCGTGTTGTCAGTCCCATCATTGATGTCATCAGCCTGGATAACTTTGCTTATCTTGCAGCCTCTGCTGACCTCAGGGGAGGGTTTGACTGgagtttacattttaaatgggaGCAGATTCCTATTGAGCAGAAAATGGCGAGAAACGATCCTACACAGCCAATAAGGACTCCAGTGATTGCTGGTGGGATCTTTGTTATGGATAAGAGTTGGTTTAATCATCTGGGCCAGTATGACACACACATGGATATCTGGGGTGGTGAAAACTTTGAGCTGTCATTCcgtgtgtggatgtgtggagGCAGTTTGGAGATTCTGCCTTGCAGTCGTGTGGGTCACGTCTTCAGAAAGCGCCATCCGTATGATTTCCCAGAAGGCAATGCTCTTACCTACATCAAgaacaCACGGAGAGCTGCGGAGGTGTGGATGGACGAGTATAAGCAGTATTATTATGCTGCGAGACCCTCTGCTCAGGGCAAGGCTTTCGGAAGTATCGCCGATCGCTTGGCTCTGAGGAGGAAACTGAACTGTAACTCTTTCCGCTGGTATCTGGAGAATGTGTACCCTGAGCTCAGGATTCCAGAACAGAAAGTTACTTACAGTCTGCTGAAACAGGGTGGGCTCTGCCTAGAAAGCCACAGCACAGACAGTCTGGGTTTGGCTGATTGCAAGAGTGGGTCAAGTATACCTGCCTCACAGaaaTGGACTTTGATAGAGCCACAGATTCGCCAGCAGGACCTGTGCTTGGCCATCACATCCTTTTCCTCAGGGTCTAAGGTCAGGCTAGAGCCCTGCAGCCCTAAAGAGTCCAGACAGAAATGGAAACCCAGAGGCCCAGCACTGCAGCATATGATCAGTGGTTTGTGTTTGGACAGCCAGCCCCCAGCAGGCCCACCGGTAATTGCACAGTGCCGCCCCCAGATGGCCAGCCAGTCCTGGGAGCCTCAGTTGGTCACCTGACTTTAAAGAGGTGGGTCGTGAGGAGGGAGCAaggagaagaggagaaagaaggaggagaagattGTGGTGCTTTAGGGCCCAGAGGAACAATGTCTGCACACTGTTTTAGTTGAAGTGCTGCTTTCAGTCCAGTAGACCATGGCCATGTCCAGAAATCCACACTTCAGCACCTGTAATCCTGCTTCTGTGCTCATACCACTGATCTTAAGTAGCCAGATAGAGAAAAGCAACGAGCAGCACCTCAAAATTGACCCCGCTAAAGCAGTCTGCAGTCCTCAAATGGACTTTTCTCTGTCTAGGCTACTTGCATTCAGTCACATGTTTGAACATGGTCAACGTTTACATTAAAAGAAGAATATTAATGCCATTGTTCACGGCTGGCAGGAGAATCCTGTGACGTCTTTGAGCTTTCTATTTTGATGTGTTTAAAGAACACAAATGGAGAGAGACTAGTTATGTATATTTATGCCTTTTACTACCTTTCAGAATGGTCAGAGTGCCCACCTgtacaaacacatttttcacagtTGTTGTGGCCCCACACTGTAGTTTTCATAAAGCTCTTATTGGAGTCTGTGTCTTGTTAAACatcattaataaatgttttaacattttgatcactcagtgtgtttacatgcaatTCCGAATCTGATTCCACCAGTGAGATGGCAACAAAACacttttggggaaaaaagttTGGAAAAAGAATTCAAATCTAAGTAATTTACCTGATGCAAGTCCTTGTTgctttaaataatgagtttaacaatgtttaaagaatatttactggttgcaaagcaaaaatcCAGTTGTTAGCTTACTCATGTAAAATCTGTTTTCTTATTACTGGACTACCTAAATTAATGTAAAGGTGTTGATCAGATAAGATTggattatgaagtgcatgtaaacactaACTTATTTGTCAGAACTAGGGGCAATTTACATGTTGAGACTAAAGTGTACATATTATAGAAGGTCATTCTTAAGTTAAACTGCCTTTTTTCCCTCAGAACACCAAACTGGCTTTAATTTGAGATCCATAACCCTGCAGTATAGGTGCTATAAAGCATTATTTGAGTGATACCATATAATCTTTTTCTCACATCTCTtttacagaaatgttttttttttgtttgttttctttctttcttcttcttgatGGTATATGGCATTGCTCAGAGAACTTTGTTGTTCCTTTATTTGTAAGTGTGCAGTAGGTTTGTAGCTTTTGggagttttgtttttataatgtgcTCACCATCCCACTTATCTGGGATTAGTGTAAATGCCATGCTTGTGGTTTAAAGTTTAGAAATTTTGTCTTAGAATTGCATCTAAGAGCAAAGAGTAACAAGAAGCTTTGCTGAGCATAAAATTCATTCAAGGCTGTTGACTGAGGAAAAGAGCAGAGTAGAATTCAATGAACTGATGTGAGAATGTGGGCTAAaaattttttctgtttaatgttCGATCAAGTGAGCACTTTTAAGGATCTATGATTTTGCATGGTACTGTGAAACTCCACAAAACGCGTATGTGACATATCCAAAGTCCAAAGACTGTTTTTCTTGTTCGTTTGCCATTTTAAGAGTTGTAAATACTTGAAACAAGATCAAAATGAGCAATCATTTGatgaaataaagtatctatcaccagaaaaa

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110979 lncRNA upstream 75006 21880537 ~ 21881002 (+) True G82336
TU110993 lncRNA upstream 77267 21878055 ~ 21878741 (+) True G82349
TU110989 lncRNA upstream 86114 21868379 ~ 21869894 (+) True G82345
TU110952 lncRNA upstream 167068 21787174 ~ 21788940 (+) True G82311
TU110892 lncRNA upstream 234630 21720629 ~ 21721378 (+) True G82270
TU111046 lncRNA downstream 79595 22074542 ~ 22079050 (+) True G82383
TU111124 lncRNA downstream 143549 22138496 ~ 22141716 (+) True G82438
TU111156 lncRNA downstream 239556 22234503 ~ 22234891 (+) True G82465
TU111167 lncRNA downstream 290116 22285063 ~ 22285341 (+) True G82476
TU111178 lncRNA downstream 360694 22355641 ~ 22356086 (+) True G82487
XM_007253814.3 mRNA upstream 7817 21927566 ~ 21948191 (+) True vps39
XM_022672936.1 mRNA upstream 29635 21914226 ~ 21926373 (+) True tmem87a
XM_022672931.1 mRNA upstream 283868 21520907 ~ 21672140 (+) True ralgapa2
XM_007252546.2 mRNA upstream 659752 21282603 ~ 21296256 (+) True gpr68
XM_022672922.1 mRNA upstream 676870 21194708 ~ 21279138 (+) True LOC103041063
XM_007253808.3 mRNA downstream 5666 22000613 ~ 22046430 (+) False numb
XM_022672937.1 mRNA downstream 5667 22000614 ~ 22046430 (+) True numb
XM_007253806.3 mRNA downstream 5667 22000614 ~ 22046430 (+) False numb
XM_007253807.3 mRNA downstream 5667 22000614 ~ 22046430 (+) False numb
XM_007253810.3 mRNA downstream 5667 22000614 ~ 22046430 (+) False numb
TU110179 other upstream 2282370 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 2289961 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 3025254 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 3435061 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 3491912 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 362697 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1235483 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 1880492 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 1880492 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 1914735 23909682 ~ 23920698 (+) True G82811

Expression Profile