RNA id: XM_007253814.3


Basic Information

Item Value
RNA id XM_007253814.3
length 4568
RNA type mRNA
GC content 0.45
exon number 24
gene id vps39
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21927566 ~ 21948191 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAATCGTTTACGAGTCGGTCACAGCTCTTTGCGAGTTGGCTAGCTAGCGAGCCTACAAACTGTCAACACCCCGAACTGGCCTGTTTTACCGGGGGTTTGGTGTTCTCTGGGAATAGCTAGGGAGTTCCGAGGTTGGCACGAACTTATCTGAGTCGGAATATGGGATGAAATGTATTTAGTTCAGTAAGAGAGGCGATAGTTGTGGCTTTGTTGACACTCGGACTAAAggagctagctagcgttagccaTGGCAGCTCTATACAGCagcgctagctagctaactaattagCCGCGCCGCTAGCGCTCACTGTACCCGTGATATATTCACTTTCTGACGCTGTCACACTTTTTACATTCGTGGTGGAAATACGGGAGATGGAGCAGAAGGGTTAGCCGAAAGTTTAATTAGAATTAGTGGGGTTGTGTAACTGGTATGTGAGCTCTGAGCACTGTTGCTGTGAGCTAGGGAACGATAGCTAGGCTCGATAAGGGCTTATTTTCAGTTCACCAGCTTCCCGGTTCGCAGATGCCACCTAAACCTTACAGTTCCACTTTTCTTTAAAGTCGTTTTATTTTCTAGCTTTTTGATTGCTAAATCTGCCGCCATGCATGACGCCTATGAGCCCGTACCTATTTTGGAGAAGTTGCCCCTACAGATCGACTGCCTTGCGGCCTGGGAGGACTGGCTGCTTGTGGGTACAAAACCAGGCCACCTCCTTCTCTACAGAATCAAGAAGGATGCAGGTACGAATAGATTTGAAGTAACACTTGAGAAATCCAACAAGAACTTCTCAAAGAAGATACAGCAGCTGTATGTTGTTTCCCAGTACAAGATTTTGGTCAGTCTGCTGGAGAATAACATCCACGTCCATGACCTACTCACTTTTCAGCAGATTACTGTTGTATCAAAGGCTAGAGGAGCTACACTCTTTGCTTGTGACTTGCAGCAAACCTCCTCCGGTGAAGCAAAATTGCGGATGTGTGTTGCTGTAAAAAAGAAACTACAGCTGTACTACTGGAAAGACAGGGAGTTCCATGAGCTGCAGGGAGATTTAGCAGTACCAGATATTCCCAAGTCCATGGCCTGGTGTGAAAATTCCATATGTGTTGGTTTCAAACGTGATTACTACCTGATTCGAATGGATGGACGTGGCTCAATCAAAGAGCTGTTTCCAACAGGAAAGCAGCTAGAGCCGCTGGTTGCACCATTGGCTGATGGGAAAGTGGCAGTTGGTCAGGATGACCTCACAGTTGTTTTAAATGAAGAAGGAGTGTGTACTCAAAAGTGTGCCCTCAACTGGACCGACATCCCTGTTGCAATGGAGCACCAGCCCCCATATATTATTGCAGTGCTGCCACGGTATGTGGAGATCCGTACCTTTGAGCCCAGGCTGCTGGTGCAGAGTGTGGAGCTTCAGAGGCCACGCTTTATCACCTCTGCTGGGCCCAATATAGTGTACGTTGCCAGCAACCATTTTGTTTGGCGACTTGTGCCAGTCTCCATAGCCAGCCAGATCCGGCAGCTCCTGCAAGACAAGCAGTTTGAGCTGGCTCTTCAGTTGGCGAAAATGAAGGATGACTCCGATGGTGATAAAAGGCAGCAGATTCACCACATCCAGAACCTATATGCCTTTAATCTTTTCTGTCAGAAGCGCTTCGATGACTCCATGCAGGTGTTTGCAAAGCTTGGAACAGATCCTACACATGTGATTGGACTGTATCCAGACCTACTACCCTCTGACTATCGGAAACAGCTGCATTACCCCAACCCACTGCCCACTCTCTCTGGAGCTGAGCTCGAGAAAGCCCACTTAGCTCTCATTGACTACTTAACACAGAAACGCAGCCATTTAGTAAAGCAGCTGAATGACTCAGACCCGTCAACCACCTCCCCTCTTATGGAAGGTACACCCACAATCAAAAGCCGTAAAAAGCTCCTTCAGATCATAGACACCACCCTGCTTAAATGCTACCTCCATACAAATGTCGCCTTAGTATCACCCCTCCTGCGCCTGGAGAACAACCACTGTCATGTAGAGGAGAGTGAGTATGTGCTGAAGaaagcccacaaatacagcgaGCTCATTATCCTCTATGAGAAGAAGGGCTTACATCAGAAAGCCCTGCAGGTCCTTCTGGATCAATCCACTAAAGCCAACTCCCCTCTGAAGGGTCATGAGAGGACAGTGCAGTATCTCCAGAGGCTAGGCACAGAGAATCTGGGTATCATTTTTGAGTTCTCCCCATGGGTGCTGAAGATTTGCCCAGAGGACGGTCTGAAGATCTTCACAGAGGACCTGCCAGAGGTAGAAATGCTTCCAAGAGACAAAGTGCTGGACTTCTTAAAGGAGGGCTTCAAGGAGCTGGCTGTGCCATATCTGGAGCACATTATCCATGTGTGGGATGAAATGGGCCCTGAGTTCCACAACGTACTGATCCAGCTCTACCTGGAGAGAGTACAGACCCTGATGAAGGAGTATCTCAACTCACTGCCTGAAGGTATTCCAGCTGTAGCTGCAGGAAAAGAGGAAGGTGAGCTTGGAGAATTTCGTAACAAGCTGCTGTGTTTCCTGGATGTTTCCTCGGCCTATGAACCAGAAAGGCTCATCAGTGACTTCCCATTTGATGGTCTGCTGGAAGAACGAGCTCTGCTCTTGGGCCGAATGGGAAAACACGAGCAAGCTTTATTTATCTATGTGCACATACTGAAGAACACATACATGGCAGAGGAGTATTGCCACAGGCATTATGACAAATTAGCAGATGGAAGTAAAGATGTGTACCTGTCTCTGCTCCGCATGTACCTGTCTCCTCCAGATGTGCATTGTCTTGGTCCCATTAAGATGGAGTTATCTGAGCCCCAGGCAAATCTCCAGGCTGCCCTGCAGGTCCTTGAGCTGCACCACAGCAAGCTCAACACTACCAAGGCCATAAACCTGCTCCCAGCGAACACTCAGATACGGGAGATCCGCGTGTTTCTGGAGAGTGTATTGGAGGAGAAAGCTCAGAGGAAACGCTTTGACCAGGTCCTTAAGAGTCTGCTCCAGGCTGAGTTCCTGCGGGTCCAGGAGGAGCGGATCTTTCATCAGCAGGTGAAGTGTGTTATTACTGAGGAGAAGACCTGCCGGGTGTGCAAGAAAAAAATTGGAAACAGTGCCTTTGCCAGGTATCCAAATGGTGTGGTGGTCCATTACTTCTGCTGCAAGGATCGCAGTCTGTGTCCTACTGAATAGGAAGATTCCCTCCAAACAGATGCACTTATACAAATCTCTGACTATTTCGAAGACCATTATAATTGACACTTAAAAGAACGACCTCACTGCATTATCGAAGGAAATGTCAATCTGGAATGGTATTTGGTTTGAGTCAAACTTACTGAACCTTGGACTGATTCCTCTTTTGATGGCTATGGATGGAGACCTATCTGTATAGCAATGCAAGTAAGGTCTTGTTACGTTCTGCTCAGATAATTAAGTTGATGCACAGCACATACTGTAGAATCTTGCATTCTTGGGAGGAAAAACTCAGTGCCTCTCCTTCACTTCTTTGtttgtgttcttttattttgagGTACAGTTTTTGTCAAAGTTTACTATGAGcaattatatatgtaaaattaaaTGCCTGTATTTCATGTGTTAAGCTTGTCCTCTGTTGTGTTCCAGTTCGCACAGTATACACAGACTGTTATGCTGAGCCTAGCTCGTGAGTGGGCTCTCTGCTTCACTGTATTAGCTTTAGGATGTCCTGGCTGCCGTATTGGGGGGGATGGCATACCAGACACCAGCTCAAAACTTTTCTCTGAGCTTTCTTGCAAGGGCCAGCACTCACAAGGGCCCTTTATCATAGATTGGCTGCACAAATTAGTAGGTTGTAAATTATTTGTTGTTTCTTATTTCCTTGCacttgctctgttttttttttttttttttttttttttttttttttttttttttttggtgggtcTCAGACATGTAGCAAGACCATACGGAAGTTGCAAACAAAGCGGTTTCTCAGTTTGTAACTTTTTAATACAAagcaaaagcagtgtttttgtttttctatctttttaGCTGGAAGCGTAATAATAACAGCAGCTGTTCACCAATCACAGTAGCATGGCACTTTTTGGCTTCTATTTAACTTATGGCTTTAATTTATTCTTCATAGAGGATTTGCTCTAACAAAAGTAACTAATGATTAGAGTGGATCCTTCTACGCAGGTGTTTGATAATCTCTCACAGATGGAAAGCAGCCCTTAGGGGGCACCAGCACTCTGGCTTCTTGTTAAAATGTGTTCTGTGATCTGTCAGAATAACAGTCATCAAATACTTGTCTCTTAAAAAGGATCAGTAAACCCTGTTTCCTTCAATTATGGTTTATTCAACCAAGATCATGACTGTTGCTAAAACTGAGGAGATGAATGACGGTTGCTTATGTTTGTAAGCTGTGTACCATAATGATATGTGGTGGGGTTTGAAGAATGTTACATGTATAGATTGtattttacaccattttacatATGAATTGGGGGATATGTTGATGCTAATAAACATGCATCTTGTCAA

Function

GO: NA

KEGG:

id description
K20183 VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110979 lncRNA upstream 46564 21880537 ~ 21881002 (+) True G82336
TU110993 lncRNA upstream 48825 21878055 ~ 21878741 (+) True G82349
TU110989 lncRNA upstream 57672 21868379 ~ 21869894 (+) True G82345
TU110952 lncRNA upstream 138626 21787174 ~ 21788940 (+) True G82311
TU110892 lncRNA upstream 206188 21720629 ~ 21721378 (+) True G82270
TU111046 lncRNA downstream 126351 22074542 ~ 22079050 (+) True G82383
TU111124 lncRNA downstream 190305 22138496 ~ 22141716 (+) True G82438
TU111156 lncRNA downstream 286312 22234503 ~ 22234891 (+) True G82465
TU111167 lncRNA downstream 336872 22285063 ~ 22285341 (+) True G82476
TU111178 lncRNA downstream 407450 22355641 ~ 22356086 (+) True G82487
XM_022672936.1 mRNA upstream 1193 21914226 ~ 21926373 (+) True tmem87a
XM_022672931.1 mRNA upstream 255426 21520907 ~ 21672140 (+) True ralgapa2
XM_007252546.2 mRNA upstream 631310 21282603 ~ 21296256 (+) True gpr68
XM_022672922.1 mRNA upstream 648428 21194708 ~ 21279138 (+) True LOC103041063
XM_007252545.3 mRNA upstream 648428 21194709 ~ 21279138 (+) False LOC103041063
XM_007253813.3 mRNA downstream 7817 21956008 ~ 21994947 (+) True galnt16
XM_007253808.3 mRNA downstream 52422 22000613 ~ 22046430 (+) False numb
XM_022672937.1 mRNA downstream 52423 22000614 ~ 22046430 (+) True numb
XM_007253806.3 mRNA downstream 52423 22000614 ~ 22046430 (+) False numb
XM_007253807.3 mRNA downstream 52423 22000614 ~ 22046430 (+) False numb
TU110179 other upstream 2253928 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 2261519 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2996812 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 3406619 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 3463470 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 409453 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1282239 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 1927248 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 1927248 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 1961491 23909682 ~ 23920698 (+) True G82811

Expression Profile