RNA id: XM_007257305.2


Basic Information

Item Value
RNA id XM_007257305.2
length 2236
RNA type mRNA
GC content 0.49
exon number 9
gene id eipr1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29265053 ~ 29324443 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGCGTGATTTCATTTCACTCTCGCGGAAACTGCCAGCCAGAGCAGACTCTGGTCACATATTCATACAACCTGTATTATTATGAATGAAAAAGCCTTTCTGTAGCAATAAATATAGcctaatatacatattttacagctTCTGTTCATAAGCCAGAGGTTTGGAGACATGGAGGACGACGCTCCTGTCATTTATGGTCTGGAGTTTCAGGCCCGTGCTTTGACTGCTCAGACTGCTGAAACTGACGCGATAAGGTTCTTAGTAGGCACTCAGTCGCTCAAGTTTGATAATCAGATCCACATCATTGACTTTGATGATGAGAACAATATCATTAATAAGAATGTGCTTCTGCATCATGCTGGTGAGATATGGCACATCAGCGCCAGCCCCGCTGACAAAGGAGTGCTGACCACGTGCTATAACAAGACCTCAGAGAGTCGTGTGCTAACTTGTGCAGCGGTGTGGAGGATGCCCCTGGAATGGGAATCAGGCAGCCACGAATCCCCCGACGATTCATCAAACAGCCCACAGACCCTGGAGCTCCTCTGTCACCTTGACAACACAGCCCACGGCAACACGGCCTGTGTGCTGTGGGAGCCCATGGGCGATGGCAAGCGTGTGATCTCTCTGGCCGATAGCCACGTCGTGCTCTGGGaccttcaggagagctccaccAAGGCCACGATCTCCAGCAGCGCCACCCTGGAAGGCAAAGGGCAGCTGAAGTTCACCTCTGGCAAGTGGAGTCCACACCACAACTGCACCCAGCTGGCCACAGCCAATGACACGGCCATCCGCGGCTGGGACCTCCGCAGCATGAGTCAGATCTTCTGCATTGAGAATGCCCATGGGCAGTTGGTGCGAGACTTGGACTTCAACCCCAACAAGCAGTACTACTTGGCCAGCTGTGGAGATGACTGTAAGGTCAAATTCTGGGATGTGAGGCATATCAACGAGCCCGTCAAAACCCTGGAGGAGCACTCGCACTGGGTGTGGAGTGTGAAGTACAACCACTCGCACGACCAGCTGCTGCTTACAGCCAGCAGTGACAGCAGGGTGATCCTGTCCAACATGGTGTCCATCTCCTCTGAGCCCTTCGGCCACCTAGTGGACGATGACGACCTCAGTGACAATGAGGAGACTCATCATGAAGAGAAGAGCAAAGAACCACTGCAGGACAGCATCATCTCCACATACGAGGAGCACGAGGACAGTGTGTATGCGGTGGAGTGGTCTTCAGCTGACCCCTGGCTGTTCGCCTCCCTGAGTTACGATGGCAGACTGGTCATTAACAGGGTGCCCAGAGCCCTGAAGTATCGCATCTTGCTGTAGCGTGAGTGACTAAAGGGATGAGAGGAAAGCACTTCTAAACTGCTGAATGTGATAGATGTGCACAAAAAGTAAAGactataagaatataaaaaaaataccgaAAATACAAGCGAGACGTTTGAAGAAAGTGGCGAGCGGCAGGCCGGGAAAACACGAGTCGAGATACATTAGCATAAAACACACATCCGCTATTAACACCACTAATTAAAGGCAGTCCCGAGAGCAGTGGGATGGCTTGGAGGCTGTTTGAAGGCGAGAGGGCCGCGGGGCACGGAGTGGCGTTTGTCTTTGAAAAAGCCCCTCGTGTTGATAGCCAGAGCTGCGCTGGTTGTGTTAGAGAAGCCCAGGCTCGCTTCATCTCGGCCAGCCTCGGGCAGCCCGGCGCTTGGCTCCAGCCCCACCACTGAGTACAAAGTGCAGCCATGGAGAAAGACCTGCCAGGGGGAGCACAGCGCAGCAGGCCGCTCCTCCAGCCTCCGCACTCCGCACTGTCTCTTGCTATTTCTCCTCTACTTTCTCCCAGTTAACTCCCACCAGATCCACCATACTGCTCCTCACCAACAGCTTCATCTATGGGTGAAGAGAAGTAAGGGGGAGTCTACCTAAACTTTAAACGAGTTAACATTAACTTATTGCTGTTCAGTAGCTTTGTTACACTGCACTATTAAAGTTCTGAGACAGTGTTCCTTTTTTATTGTGATATCCAGCCATTGTTGTTCTATAAAAAgttagaaaaatacattttgcaaCCTTCAGCTTCATGTTGCTTAAAGTTCCAATCCCAGAGAAAGTTTGAAATCTAATTAATCTAATTTTCAATTGAGAAtccaaaattgaaaaaaaatatatattcattatttattttttttattttttttatttttgaaaaaataacgtcttgtat

Function

GO: NA

KEGG:

id description
K23289 EIPR1, TSSC1; EARP and GARP complex-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113704 lncRNA upstream 79115 29179869 ~ 29185938 (+) True G84415
TU113702 lncRNA upstream 89066 29172806 ~ 29175987 (+) True G84414
TU113700 lncRNA upstream 102686 29160394 ~ 29162367 (+) True G84412
TU113691 lncRNA upstream 152404 29110612 ~ 29112649 (+) True G84403
TU113690 lncRNA upstream 161075 29103731 ~ 29103978 (+) True G84402
TU113767 lncRNA downstream 16488 29340931 ~ 29341213 (+) True G84462
TU113778 lncRNA downstream 34754 29359197 ~ 29359659 (+) True G84473
TU113789 lncRNA downstream 64785 29389228 ~ 29389688 (+) True G84484
TU113805 lncRNA downstream 209379 29533822 ~ 29534343 (+) True G84492
TU113856 lncRNA downstream 417584 29742027 ~ 29742487 (+) True G84534
XM_022673123.1 mRNA upstream 49380 29187575 ~ 29215673 (+) True adi1
XM_022672486.1 mRNA upstream 296025 28854283 ~ 28969028 (+) True LOC111193134
XM_007257310.3 mRNA upstream 463814 28775149 ~ 28801239 (+) True arel1
XM_007257327.2 mRNA upstream 516625 28739241 ~ 28748428 (+) True LOC103029222
XM_015607893.2 mRNA upstream 589390 28662092 ~ 28675663 (+) True dlst
XM_022673125.1 mRNA downstream 90069 29414512 ~ 29625594 (+) False LOC103038403
XM_022673128.1 mRNA downstream 109383 29433826 ~ 29610931 (+) False LOC103038403
XM_022673129.1 mRNA downstream 109383 29433826 ~ 29610931 (+) False LOC103038403
XM_022673124.1 mRNA downstream 109386 29433829 ~ 29625594 (+) True LOC103038403
XM_022673126.1 mRNA downstream 109387 29433830 ~ 29625594 (+) False LOC103038403
LOC107197844 other upstream 186155 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 221314 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 223446 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 239939 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 264947 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 2130541 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 2499143 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 2874740 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 2874740 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 2875448 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile