RNA id: XM_007257320.3


Basic Information

Item Value
RNA id XM_007257320.3
length 3132
RNA type mRNA
GC content 0.47
exon number 21
gene id nol10
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29786026 ~ 29815914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTGCAGGGTCTCGTGTTCCGTCCGGACTGTAATCCGCAGCTCTTGTTGTTGTAGTTAACAACGTGGAGCGAAGTTCATACAGAAATCGGCCCAGTTTAAACcttaaatacttaaacacaCAGATTATGCTGAGTGAAAAAGACCTGAACTCTTAAACATGCAGGTGTCCAGTGTGAACAACGTGAAGATTTATAATCTGAGCCATGGAAAGTCTCTGCCTGAGtGGTTATCAGATCGAAAAAGGAGAGCCTTACAAAAGAGAGATGTTGATGTCCTCAGAAGGATTGAGCTCATTCAGGATTTTGAGATGCCCACTGCAGCAACCACTATCAGAGTATCACGAGATGGGCAGTATATTTTAGCTGCAGGAACATACAAACCCAGGATCCGATGCTATGACACGTACCAGTTGTCTCTGAAGTTTGAGAGATGTATGGACTCTGATGTGGTGACCTTTGAGATCCTGTCTGATGATTACTCAAAGCTTGTGTTTTTGCATGTGGATCGTTACGTGGAGTTTCACTCTCAGCATGGACACTACTACAAAACACGCATACCGAAGTTCGGTCGAGACTTCTCCTACCACTACCCATCCTGTGATCTGTACTTTGTTGGAGCCAGCTCTGAGGTCTACAGGTTGAATCTGGAGCAGGGCAGGTTCCTCAACTCTCTGCAGACCGATGCAGCAGAGATAAATGTGTGTGATATCAACCCTGTTCATCAGTTGTTTGCTGCAGGGACTGTGGAGGGGAAAGTGGAGTGCTGGGACCCTCGCGTGCGCAGTCGAGTGGCTGTTCTGGACTGTGCTCTCAGCAGCGTGACTGAGGGAACAGAAGTTGAGGGCTTGCCTTCTGTCAGTGCGCTGAAGTTTAACAGCTCGCTGGGAATGGCTGTGGGCACCACTACTGGACAGgTTTTGCTGTTTGACCTGCGTTCCTCCCACCCCCTACTGGTGAAGGACCATTATTACGGCATGCCCATCCATTCCATTAATTTCCATGAGCAGCTGGACCTGGTGCTGTCAGCAGACTCTAAAATCATCAAGATGTGGAACAAAGACACCGGTAAAATGTTTTCCTCCATCGAGCCATCATCCAGCATCACTGATGTTTGTGTTTATCCTGGCTCTGgtATGCTTTTCACTGCCAATGAAGACCCCAAAATGAATACATTCTACATTCCCGCCCTGGGTCCTGCACCCCGCTGGTGCTCTTTCCTGGATAACCTGACTGAAGAACTGGAAGAGAATCCAGAGAGCACCGTCTATGATGATTACAAGTTCGTCACACGCAAAGATCTGGAGAACCTTGGTCTGACCCATCTGATTGGCTCTCCTCTGTTGAGAGCCTACATGCATGGCTTCTTCATGGATATCAGACTTTACCACAAGGTAAAGACCATGTCAAATCCTTTTGCTTACGAGGAATATCGAAAGGACAAGATTCGCCAGAAAATTGAGGAGTCGAGAGTTCAGCGAGTCCAGCTTAAGAAACTTCCCAAGGTGAATAAAGAGCTCGCTATTAAGCTGATGGAGGAGGGAGATAATGAAGATGCTCTGAGTGCTGCCAAGAAGAAGAAAGCCAAGGGTGCCACCAGCATTCTCCGTGACGATCGTTTCAAGATGATGTTTGAGAACCCAGACTACCAAGTTGATGAGCGTAGCGAGGAGTTCCGATTGCTCAACCCCATCGTCTCCAAGGTTGGCCagcagaggaggaagaaactgCAGCAGTTGGTGGAGAAGGAGGCACATCAACAGCAGGAAGATCAGGAGGATGAGGAGCTGGAGGGCCGGGCCAGTTCAGAAGAAGAGGAGAGCTCTGACGATGATAAAAGTTGGGTGGAGGAGGTGCGGGAGCAGCGGCGCCTCATAAGGGCTGAGGAGAGGCAGCGCAGGTTTAATGAGAGGAAGAAGCAGGACCGCAACACCAACCTGCAGAGTTCAGATCCAGCTGGGAGCTCCCAGCAGTCCCAGGcacaggggcggagccaaccccggTTCTACCAGATCAAAACCGGCGAGGAGTTTCGCAGCTTTGGCGATGTTGCACGCAAACAGAAGGTGCAAAAAACATCTCTTGAGGAGCGTCTGAGGCAGGAGGAAAGCTCAGGGATGCTGAATCTCACTGACACGGCTGTCGGAAGCAAACAGATAACTTTCACTCTCAAGAAGTCGGAGAAGCAGCTGAAACAGCAGCAGGCTGAGCGGGACCACCATGACGAACGCAGGAAAATCAGGAGGTCTGCCGGCCACCTTTACACTCGGGGCAGAGGGAGAGGCAGAGGGAGAGGCAGAGGCAGAGGACGTTTCTGACCTCAGGACAGACCATGATCTCTGCCAGATAGAACAAAGAACTTCTAGAAATCTAGAACCTCAGCATTGTGGTGCCAATCACTCCTATAGTGCTGACCTGCAGGGCTTTGTTATTCCAAGCTCACAGTGCCGACATAAACTGTGTCTATTTGCCCCAGAGACAATAGCACAGACGAAGGTGCTGAGAGTGCTCCtgatttccatcagcaggacggCAGAGTGCTGAGGATGGAATGTGAGACCGGatgagatgaagagagagagaagatcgGAGGaagaatctgtttttttattattattttattttaaggagTATGGATTGTAGTATACTGTAAAAGTTGGTGtacgtgtgtgagtgtgtgtaagctgTGTGCAACACCTCTGACCTTCTACTTTTCTCCTTTTGTCCCTCACTGCAGTCTAAACAGAACTCTGTGCTGTTTAAGAAACATGGAATATTTTATCCACATCTGCCTGTCTTGTGTGATCACTGATTTTTTTGTATACTGCATATTCAGCTCCTCTCTCACAAACCTTGCAATTCAGGGGTAGAAATAATATTTTGGATTGTTTATTTACCATCATTTAAAAGGACAAGCCTCCCTTGAAGTTGTATTAACATTTAATAGTGAATAGACTGATAGAAAAGGTCTAACAAATCTTACAAAGCCTGAACCATCTATTAATTTTCAAATCATTATTATATTCTCTGCATTACATAAAACGCAAGGTACAAACATCACCTTTCTTacataataagaaataaaaaaatgagtttatttgacCTTCTGATTGattattaaaaaaggaaattta

Function

GO: NA

KEGG:

id description
K14788 NOL10, ENP2; ribosome biogenesis protein ENP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113857 lncRNA upstream 39088 29746627 ~ 29746940 (+) True G84535
TU113856 lncRNA upstream 43541 29742027 ~ 29742487 (+) True G84534
TU113805 lncRNA upstream 251685 29533822 ~ 29534343 (+) True G84492
TU113789 lncRNA upstream 396340 29389228 ~ 29389688 (+) True G84484
TU113778 lncRNA upstream 426369 29359197 ~ 29359659 (+) True G84473
TU113884 lncRNA downstream 43546 29859460 ~ 29864834 (+) True G84558
TU113933 lncRNA downstream 116046 29931960 ~ 29932390 (+) True G84591
TU113940 lncRNA downstream 143461 29959375 ~ 29961212 (+) True G84597
TU113939 lncRNA downstream 151636 29967550 ~ 30015180 (+) False LOC103025336
TU113968 lncRNA downstream 255043 30070957 ~ 30072897 (+) True G84623
XM_007257323.3 mRNA upstream 19606 29757827 ~ 29766422 (+) True LOC103027650
XM_015607883.2 mRNA upstream 48752 29734613 ~ 29737276 (+) True LOC103028385
XM_007257326.3 mRNA upstream 69157 29626635 ~ 29716871 (+) True pxdn
XM_022673126.1 mRNA upstream 160434 29433830 ~ 29625594 (+) False LOC103038403
XM_007257318.3 mRNA downstream 31714 29847628 ~ 29853265 (+) True odc1
XM_022673137.1 mRNA downstream 173872 29989786 ~ 30008928 (+) False LOC103038716
XM_022673136.1 mRNA downstream 179457 29995371 ~ 30008928 (+) False LOC103038716
XM_022673135.1 mRNA downstream 182927 29998841 ~ 30008928 (+) True LOC103038716
XM_022673134.1 mRNA downstream 187564 30003478 ~ 30008928 (+) False LOC103038716
LOC107197844 other upstream 707130 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 742289 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 744421 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 760914 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 785922 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 1639070 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 2007672 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 2383269 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 2383269 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 2383977 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile