RNA id: XM_007257340.3


Basic Information

Item Value
RNA id XM_007257340.3
length 2615
RNA type mRNA
GC content 0.52
exon number 7
gene id esrrb
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28428946 ~ 28560094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aggaggaggaggaggtgtgcAGACCTGTCGCCCAACTGCAGGAAAGCAGCAGCTGCAGTCAGTTTGTAGCTAAAGGCAGGTATAGGCAGGCAGAGGAAGCTGAGGACATCCCTCTATACCTTTTCTTACAGCAGGCGCAGCTGAATGAAGGAGCTGGaaatgagctgtgtgtgtgagaagGCTGTTGAACAGGATGGCTGCTGAGGAGCGGCACCTGCCATCCAGCTGTGGCTCGTACATAAAGACGGAGCCGTCCAGTCCTTCCTCGCTGGTGGACACAGCCAGCCACCCGAGTCCCGGTGCCCATTCAGACGCCAGCGGCGGTTACGCCAGCGCCATCAACAGCCACTCCAACGGCCTGGACTCTCCTCCCATGTTCACGCCGGCCGGGCCCCTGGGGGCCGCGGGCAGCGCCTGCCGCAAGCGCTACGAGGACTGCTCCAGCACGCTGCTGGAAGATTCGGGCCCCATCAAGTGCGAGTATATGCTCAACTCCATCCCCAAACGCCTGTGTCTGGTCTGCGGAGACATCGCCTCGGGCTACCACTACGGTGTGGCCTCCTGCGAAGCCTGCAAGGCCTTCTTCAAAAGAACGATACAAGGTAACATAGAGTACAGCTGTCCGGCCACCAACGAGTGTGAGATCACGAAGCGGAGACGCAAGTCCTGTCAAGCTTGTCGCTTCATGAAGTGTCTGAAAGTGGGAATGCTGAAAGAAGGTGTTCGTCTGGACCGCGTGCGAGGAGGCAGGCAAAAGTACAAGAGGAGGATTGACACAGAGAACAGTGCTTACCTGGGCCTCACACTGCCACCTCCAGCTAAGAAACCATTGACAAAGATCGTGTCCCACCTTTTGGTAGCAGAGCCAGAGAAGATCTATGCCATGCCAGACCCCACCATGCCTGAGAGTGACATCAAGGCGCTGACCACTCTGTGTGACCTGGCTGACCGTGAACTGGTGGTCATCATCGGCTGGGCTAAGCATATCCCAGGTTTCTCCAGCTTGTCTCTAGGAGATCAGATGAGTCTTCTGCAAAGCGCCTGGATGGAGATTCTGATCCTGAGCATCGTCTTCCGCTCGCTGCCCTACGAGGACGAGCTGGTGTATGCCGAGGACTACGTGATGGACGAGGAGCACTCGCGGCTGACGGGGCTGCTGGACCTCTACGTGTCCATCCTGCAGCTCGTCCGCAAGTACAAGAAGCTGAAGGTGGAGAAGGAGGAGTTTGTCACGCTCAAGGCCATCGCTCTCGCCAACTCAGACTCCATGCACATAGAAGACGTGGAGGCGGTTCAGAAGCTCCAGGACGCTCTGCACGAGGCCCTGCAGGACTATGAAAGCGGGCAGCACGCAGAGGACCCTCGGCGGGCAGGAAAACTGCTAATGACCCTGCCGCTGCTCCGGCAGACCGCCACCAAGGCCGTGCAGCACTTCTACAGCATCAAGGTGCAGGGAAAAGTGCCCATGCACAAACTGTTCCTGGAAATGCTGGAGGCCAAAGTCTGAGCGACCCGACGCGCGACAGGCCACGGCCGAGCCGCCGCGGCAACAGCGGACAGAGGCCGTGTGATAGAGACCCACTAACTGAGGAGAGGCACGGGGAGAGACGCACTGCTGAATGACAGACAACTAACTTATAAACTCTTATAAACTCACCTTACGCTCTCTCTTTTTGACCTCTTTGTCTTTTCAAACCTGTCTCCCTCGTACTGTCTCTCGCGGACATGAGACGTTTTTAAAGACCTGAAAAAAGAAACTTcaaagtataaatataataaatgaagaagaaaatttaaaatatataacaaaatccTATGTACTTgtacagtaattatttttttttgttttgttatgtttatgGTCTGTGATTACGTATGACGGGAGAAACCTCTCCAACTGGGATGGATCTCAAAAAGGTGGTCAGTcagacactttttttattttgaatttttttgaAAAACTAACTCTCTCTATACATGTCATAATAAAAATCAGACCCACTACTAGGTAAGCTGTGGAGCATCTCTTAATGCCGAGCTAACCCACACGCACACTCACTTGTGATGCGTGTGATGGTTCAACCAACCCCCTGGATGCTACCAGGACTCGTATTGCCAGGACTATGTAAATATTCATCACAGTGTGACACTCAAAATGAGATGACTGTACAGGCAAAAGTTGGGAATGTTGGGGGGATCAACAGCCATGTTGTCTCGCTCTGCCTGACGTGATGGGGGGACGTGCAAAAGCTGTGCAAAGCCGCAAAGACAAACGTGAGCTCTTTCAGTTTCAACGTCCTTGAATATATACCTCTTGAGAACAGTGATCCCTGCAGCATCGATTCATCACAGGCAGCATTGATTCATCCCAGCGCAGGAAGACACAGCTGGTAAACATGTTTAACCAAACAAGCGTAGCCAGGTAGTCCGATGTGTTACTCTGTAGTGAAACTCAGCAATAAAAGGGAGCTGACTGGACGGGTGACGGGGACCTCACTCCTCTGACTGCTTCTCAATGCTGCTGCCATTTAAACCCACCACCCTTTGGTATGTTCATCTGTTCCATGTGTTGCAAGTGGGTGCATTTCGGCAATAAACGCACCACTCGCCCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113440 lncRNA upstream 110210 28373948 ~ 28374517 (+) True G84219
TU113373 lncRNA upstream 123738 28301733 ~ 28360989 (+) True G84164
XR_002650284.1 lncRNA upstream 153319 28328775 ~ 28331408 (+) True LOC111193142
TU113147 lncRNA upstream 561369 27923069 ~ 27923358 (+) True G84001
XR_002650374.1 lncRNA upstream 638761 27832050 ~ 27845966 (+) True LOC111193235
TU113497 lncRNA downstream 27302 28587396 ~ 28587954 (+) True G84264
TU113516 lncRNA downstream 145799 28705893 ~ 28723051 (+) True G84280
TU113518 lncRNA downstream 155986 28716080 ~ 28723051 (+) False G84280
TU113538 lncRNA downstream 210074 28770168 ~ 28772835 (+) True G84291
TU113542 lncRNA downstream 243020 28803114 ~ 28803321 (+) True G84294
XM_007257332.3 mRNA upstream 66922 28375537 ~ 28417805 (+) True gpatch2l
XM_022673103.1 mRNA upstream 127918 28355574 ~ 28356809 (+) True LOC111193237
XM_007257342.3 mRNA upstream 164235 28297960 ~ 28320492 (+) True ift43
XM_007257343.3 mRNA upstream 164235 28297960 ~ 28320492 (+) False ift43
XM_007257346.2 mRNA upstream 219400 28182427 ~ 28265327 (+) False ttll5
XM_015607893.2 mRNA downstream 101998 28662092 ~ 28675663 (+) True dlst
XM_007257327.2 mRNA downstream 179147 28739241 ~ 28748428 (+) True LOC103029222
XM_007257310.3 mRNA downstream 215055 28775149 ~ 28801239 (+) True arel1
XM_022672486.1 mRNA downstream 294189 28854283 ~ 28969028 (+) True LOC111193134
XM_022673123.1 mRNA downstream 627481 29187575 ~ 29215673 (+) True adi1
TU113122 other upstream 665180 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1736976 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1736976 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1976602 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 2085460 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 410170 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 410185 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 439408 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 444000 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 480885 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile