RNA id: XM_007257355.2


Basic Information

Item Value
RNA id XM_007257355.2
length 1405
RNA type mRNA
GC content 0.45
exon number 4
gene id jdp2
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28134313 ~ 28150109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATGCAACGCTTTCCCCTGTTCAAAATCTACTCACGACCCCCGGCTGACCTCAGAAAGGCACATCCCGCGAGCTCGGCACCAAAGCTGTGGTCAAGGGCGTGTGTGACATGATGCCCGGACAGATCCCTGACCCCTCAGTGACGGCAGGCTCCCTGCCCAGCCTGGGCCCACTGGCCGGCATCTCTGCCACCACGCTAACGGACCAGCTTAAATACGCCGACCTGTGCAGCCTGGGGGCCATGCTGTCTCCATTACACCTTCTGGGCAAACTGGGCAAACGTCACCTTCCCATTAAAGCAGAGAAGGAcgaggaagaggagaggaggaaaagAAGGCGGGAGAAAAACAAAGTGGCAGCAGCACGATGtcgaaacaaaaagaaagaacgaACAGAGTATCTACAACGAGAATCGGAGCGTCTGGAGATGATGAACTCAGAGCTGAAAGCACAGATCGAGGAGCTGAAACAcgagcgccagcagctcatcCTCATGCTCAATCGCCACCGGCCCACTTGCATCGTGAGGACGGACAGTGTGAAAACCCCCGAGAGCGAGACTAACCCCCTCCTGGAGCAGCTGGAGGCTAAATGAGGAGGCGCACAGGCTCAGAGTGGTGCCTTTCCACACTTACTGTTTACAGGTTAGCTTTAAGACAGCTAGCTAGAAGCACTTAGCTCTAAGCTCTTGGACAATTGAGGAGGAACGAGTGAAGCACTCCAGCCTGTAAGCCTGGAGTTTAAGAACCTTTGTGGACCAATCAGATTGGGCTATGTGCTAAAAGTTACAAGTTTTGTATTACTGTTACATTTTTCTATTTGTGGTCATTCAGTGCCTCATAGGTTCATCATAATCCAGCAAGTTAAGAGAGAACTTTCGGAGGAGCTCAGTAATAACAGCACTCTGCAACATCATTTCCTCACGGTATCATGAATGACGATAAGGCTAACAGGCGCAGCATTGCTATTTGTGTTTGTGGCCTTTTGCCAACGTAACTGGATGATTTGTACTACACTTTGCGTCTTCATGATACTGAGTCGTGACTTGCCCtcaatagcatttttttttttgacgctGGCGTCGTgtatgcacatatatatatatgaactgtTTACATCATTCTGTTTTATTAGTTACctacaatttatatattttctgatttttatacTTCttgtacattacattatatggACTGTTATCACTAGATGTGATACAATTTATATTTCTGCGACAAATAGTTATATAACCATTTTTTCTGTGACTTACTCATTTTGTTTAATGGCTGTGAAGAAATGCAAACAAATATTAAACGGGAGTCAATCCTAAATGGTATTTTgcaatataaaacatgtatttggGTAGTATGTTCTATAGACTTTAATGATTAAATCACTTCTTCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113147 lncRNA upstream 211049 27923069 ~ 27923358 (+) True G84001
XR_002650374.1 lncRNA upstream 288441 27832050 ~ 27845966 (+) True LOC111193235
TU113132 lncRNA upstream 302161 27831977 ~ 27832246 (+) False LOC111193235
TU113131 lncRNA upstream 302823 27829449 ~ 27831584 (+) True LOC103044189
TU113127 lncRNA upstream 312196 27820870 ~ 27822211 (+) False fam98b
TU113373 lncRNA downstream 151624 28301733 ~ 28360989 (+) True G84164
XR_002650284.1 lncRNA downstream 178666 28328775 ~ 28331408 (+) True LOC111193142
TU113440 lncRNA downstream 223839 28373948 ~ 28374517 (+) True G84219
TU113497 lncRNA downstream 437287 28587396 ~ 28587954 (+) True G84264
TU113516 lncRNA downstream 555784 28705893 ~ 28723051 (+) True G84280
XM_007257356.3 mRNA upstream 3517 28127393 ~ 28130890 (+) True LOC103036705
XM_007257364.3 mRNA upstream 12700 28119021 ~ 28121707 (+) True acyp1
XM_007257360.3 mRNA upstream 21116 28103916 ~ 28113291 (+) True nek9
XM_007257361.3 mRNA upstream 21116 28103916 ~ 28113291 (+) False nek9
XM_007257358.3 mRNA upstream 32471 28094364 ~ 28101936 (+) False ndc80
XM_007257349.3 mRNA downstream 2826 28152935 ~ 28177699 (+) False flvcr2
XM_007257350.3 mRNA downstream 8694 28158803 ~ 28177704 (+) True flvcr2
XM_007257344.2 mRNA downstream 32318 28182427 ~ 28265327 (+) True ttll5
XM_007257345.2 mRNA downstream 32318 28182427 ~ 28265327 (+) False ttll5
XM_007257346.2 mRNA downstream 32318 28182427 ~ 28265327 (+) False ttll5
TU113122 other upstream 314860 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1386656 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1386656 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1626282 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1735140 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 820155 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 820170 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 849393 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 853985 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 890870 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile