RNA id: XM_007257359.3


Basic Information

Item Value
RNA id XM_007257359.3
length 2274
RNA type mRNA
GC content 0.44
exon number 17
gene id ndc80
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28094363 ~ 28101936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaagaaaatatgcgAGTGACGTCACGCCGTGGTCCGTTGGAAGGCGTGTTGGCGGATATTTTTGAAAAGGACGGAGGAAGGAGAGCCGCACCGAAAACTGGATAGTGTTACTAAAATAAGGTATTTTTGAGGAGATTTAGCGCACCCTGAGCGAAAAACGAATGCATGAGGCGGAGGAATGCgagaaatgctAGTCAACAATGAGTCGAAGACCTAGCCGAAGATTTTCAGAGATGCCTTTGCGTGTAACAGATGGCAGAATGAGTATGGTGAATGCGACGCCACAGAACAAAGACAACGTATTTGGAAAGCTGAACATCCCAAAACCTCAGTCTGGTACATCAGAAAGGAGAACCAGCTTTTTTGGAAAAGGTGCTGGTGGTGGGGGCCAGAGGAACAGCTTGTTTGGCTCATATGGAGGCACAGAAAAGATTAAGGATCCAAGACCACTTCATGACAAAACATTTGTCCAACAGTGTATCAAACAGCTTTGTGAGTTCCTAGGAGATAATGGATTCCCTGGTACCATCACAGTAAAAGCTCTCCAGTCACCTTCTACAAAAGAGTTCCTGAAGATATTTGAGTTCATCTACAGTTTGCTGGACCCAACCTTTCAGTTGCCTACTACCAAGATTGAAGAGGAGATTCCAAGAATGTTCAAAGACTTAGGGTACCCATTTGCATTGTCAAAAAGCTCCATGTACTCGATTGGGGCTCCACATACCTGGCCTCAGGCTCTAGGTGCACTCATTTGGCTCATTGATGCAGTTAAAATCTTCAACAGTATAAAAGGTCAGAATCTGCTGTTTGCAGACTTCTCAGATGGAACCACCGAGCTAGAGGAGGGAGTTGAGTATAATAAGCTGTTCTTAGACTACTGCTCTAAGACCTACAACAAGTTCATGCAGGGAGCAGATACCTTTGAAGATGAGGATTTGGAGTATCTCAGTCATCTGAAGAGGTTGTACAATGTGGATGAAGCCCTACTAGAGTCCCAGCATGAAAAATACAGGATTTTGATGGAAGAGGTTGAGAGACTGGAGAAAGAGAGCCATACTGACAGGCTAATGGCACAGAGGACTGATAAGCTGAGGTTGCAGACTGATCTGCAGAAATTACAAAGCTACCGTACACACATGGAGGCATTTAAAAGTCACCTGGAGAATAAGGTTGCTGGGCTGACTGAAGAGATGGAGGCTGCtgacCTTCAGCTAGAGAGTCTGAAGCAGGAGAAGGGCAGACTGCAGCATATTCTAGAGAATCAGAAGTTCACCCCAGCCGATATTGAACGGATCAACAGGGAGCGGAATGAACTACAGCAGACCGTCAGCAGCCTGAGCCGTAGTCTAGAAGAAGCCCAGCAGCTGGCATGGAATGAAGAAATCACCCTGGTTAAAACCAAGGAGAGAGCAGAGGTCAAGTTGGCAGAGTACCACAAACTGGCACGAATGCTTAAGCTCATCCCTCAGTCTGCAGAGAATGCCTGTGGCCATGACTTTGAGATCAAAACAGTCAGTGACTATGGTCCCACCACTGCTACTCTGATCCGAACACAGATACAGAATCCTCTCAAAAACATGCTTGTGGATGTAGAAGAGGAGTTCAGCAGAATGACCAATATGAAACTTAGCCTGGAGGAGACAGTGGAGCAGGTGAATTCCAACATTTCTGAGAAGATGAATGACATAAAGCAGATAAAGGAGCAGATTCGTAGACTGGATCAACAACTGGAGAATGACATGCAGGAGCTCGCTCAGGAAGAGGAAAAGTGGGCAGCAGATGTAGACGGCgctgaaagaaacaaaaagcttCTGGAAAAGAAGGTTATGGATGGCTATGAAGAGGCTGAAGAGCATCTTAAAGCAGCCCAACAACAATACCACCTTGTGCTTCAGGAGACCAAAGAGGAGAGCCGGTTGGTAGCAAACAATTTGACTCATGTCTTCACCGCTGCAGTTAACCACTTGGGTATAGTTGAGAAACAATGTAATGACCAACTTAAAAGGATGGACAAGGTTAATGAAATTATCCGTGAAGACCAAGCAGACCTGCAACAGCTGAAGGAGATGATAGAAAACTTTGTATCTAGAGCAAACAGCCTTGAATGACTGAAGGGGAAACCAGTTTGTAAATAGTTTTGCACTCTTATTACTAATGTTAAGACTTTTCTTCTTTCTACTCTTTACTCTTTgtacactgtttattaaaatgtgttctgttttatatgttgctGTTGTAATAAACCTATtttaagattttcttttattaaa

Function

GO:

id name namespace
GO:0007052 mitotic spindle organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11547 NDC80, HEC1, TID3; kinetochore protein NDC80

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113147 lncRNA upstream 171005 27923069 ~ 27923358 (+) True G84001
XR_002650374.1 lncRNA upstream 248397 27832050 ~ 27845966 (+) True LOC111193235
TU113132 lncRNA upstream 262117 27831977 ~ 27832246 (+) False LOC111193235
TU113131 lncRNA upstream 262779 27829449 ~ 27831584 (+) True LOC103044189
TU113127 lncRNA upstream 272152 27820870 ~ 27822211 (+) False fam98b
TU113373 lncRNA downstream 199797 28301733 ~ 28360989 (+) True G84164
XR_002650284.1 lncRNA downstream 226839 28328775 ~ 28331408 (+) True LOC111193142
TU113440 lncRNA downstream 272012 28373948 ~ 28374517 (+) True G84219
TU113497 lncRNA downstream 485460 28587396 ~ 28587954 (+) True G84264
TU113516 lncRNA downstream 603957 28705893 ~ 28723051 (+) True G84280
XM_007257365.3 mRNA upstream 9088 28079573 ~ 28085275 (+) False ttc8
XM_007257366.3 mRNA upstream 9088 28079574 ~ 28085275 (+) False ttc8
XM_022673098.1 mRNA upstream 9088 28080695 ~ 28085275 (+) True ttc8
XM_022673097.1 mRNA upstream 21769 28010514 ~ 28072594 (+) True LOC103040475
XM_007257375.3 mRNA upstream 173190 27906826 ~ 27921173 (+) True LOC103041699
XM_007257360.3 mRNA downstream 1980 28103916 ~ 28113291 (+) True nek9
XM_007257361.3 mRNA downstream 1980 28103916 ~ 28113291 (+) False nek9
XM_007257364.3 mRNA downstream 17085 28119021 ~ 28121707 (+) True acyp1
XM_007257356.3 mRNA downstream 25457 28127393 ~ 28130890 (+) True LOC103036705
XM_007257351.3 mRNA downstream 32377 28134313 ~ 28150109 (+) False jdp2
TU113122 other upstream 274816 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1346612 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1346612 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1586238 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1695096 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 868328 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 868343 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 897566 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 902158 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 939043 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile