RNA id: XM_022673091.1


Basic Information

Item Value
RNA id XM_022673091.1
length 8881
RNA type mRNA
GC content 0.51
exon number 51
gene id unc79
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27928554 ~ 27997121 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggaggagggggctgTTGGCTGTtcactttttttcccccaacaCTGAGAGGAGGAACAGTGTGTAGACAGCGCAGGGTTAAAGAACAAACACCGCCGTTTTGGGCTTTTTTTGTGCGTCCAGTTTTTCAACATGTCTACGAAGGCAGAGCAGTTTGCCTCTAAGATACGATACTTGCAAGAGTATCACAACCGTGTGCTGCACAATATTTATCCTGTGCCGTCTGGAACAGACATTGCAAACACACTGAAATACTTTTCTCAAACCCTGCTCAGCATCCTGTCCCGTACAGGCAGGAAGGAGAGCCAGGAAGCTTCCAATTTGGCCGTGCCCATGACCATGTGTCTTTTTCCTGTGCCATTCCCACTCACCCCATCTCTAAGACCACAAGTCAGTTCCATCAACCCTACAGTTACTCGCTCCCTCCTTTACAGCGTTCTGCGGGACGCCCCGGCCGACCGGGGGGGGGCCACCCAGCAGAGTCGGGACGCTCAGCTCTCAGAGTACCCCTCTCTGGACTATCAGGGGCTTTATGCCACCCTCGTCACCTTGCTTGACCTGGTGCCCCTGCTGCAGCACGGTCAGCACGATCTGGGACAGGCCATATTTTACACGACAACCTGTCTGCTACCTTTTCTCAGCGACGATATTCTCAGCACTTTGCCCTATACTATGATCTCCACCTTAGCCACCTTCCCTCCGTTCCTGCACAAAGACATCATAGAATATCTGAGCACGTCCTTCCTGCCTATGGCGATACtgGGATCAACTCGAAGAGAAGGTGGTGTTCCAGCATATGTCAACCTGTCTGCTTCCTCTATGCTGATGATTGCTATGCAGTATACCTCCAACCCAGTGTACCACTGTCAGCTATTGGAGTGCCTAATGAAGTATAAGCAAGAAGTGTGGAAGGATTTGCTTTATGTGATATCATATGGACCGTCCCAAGTGAAGCCACCTGCTGTTCAAATGCTCTTCCATTATTGGCCCAACCTGAAACCTCCAGGTGCCATTAGTGAGTACAGGGGTCTGCAGTACACAGCCTGGAATCCCATTCACTGCCAGCACATTGAATGTCAGAATTCTATTAATAAACCTGCAGTAAAGATGTGCATCGACCCTACTCTCTCGGTTGCCCTGGGAGACAAGCCCCCTCCGCTCTACATCTGTGAAGAATGCAGTCAGAGGATTGCTGGGGACCATGCTGAGTGGCTTGTTGATGTGCTCTTACCTCAAGCTGAAATATCGGCTATATGTCAGAAGAAGAACTGCAGCTCTCATGTGAGGCGGGCAGTCGTCACCTGCTTCTCGGCTGGCTGCTGCGGTCGGCATGGCAACCGACCCGTGCGCTACTGCAAGCGTTGCCATGTCAACCATCACAGCAGCGAGGTGGGGGCTTCAGCAGAGACTCATCTGTATCAGACATCCCCCCCGCCCATCAACACCCGCGAGTGTGGAGCTGAGGAACTGGTCTGCACTGTGGAGTCCGTCATCAGCTTGCTGAAAGAGGCAGAGATCCATGCAGAGCAGCGGGAGTTTGAGATGAACCGACGGCGTCAGATGGGCCTCTCTACTTCCCACCACTCACTGGACAACCTGGAATTTGACAACAAAGAGGACGATCAGCATGACCAGAGACTTCTCAGTCAGTTTGGCATCTGGCTCTTGGTGAGCCTGTGTACCCCCAGTGAAAACACGCCCACAGAGAGCCTGGCCAGGCTGGTCAGCATGGTCTTCCAGTGGTTCCACTCTACCGCCTACATGATGGATGACGAGGTGGGCAGTCTGGTGGAGAAGCTCAAGCCTCAGTTTGTGACAAAGTGGCTAAAGACAGTGTGTGATGTGCGCTTTGATGTCATGGTCATGTGCCTGTTGCCCAAGCCAGTGGAGTTTGCCAGGGTGGGTGGTTATTGGGATAAATCCTGCAGTACAGTTTCTCAGCTGAAGGAGGGACTCAACCGTATCCTGTGTTTGATCCCCTACAACGTCATCAGCCAGCCGCTGTGGGAGTGCTTTATGCCAGAATGGCTGGAGGCAATTCGCACTGAAGTGCCTGACAACCAGCTGAAGGAGTTCCGGGAAGTGCTTAGCAAAATGTTTGATATAGAGCTGTGCCCACTGCCCTTTTCCATGGAGGAGATGTTTGGTTTCATAAGCTGTAGATTCACAGGATACCCTGCGTCAGTACAGGAGCAAGCTTTACTGTGGCTACATGTGCTGTCACAGCTGGACATAGTAGTGCCTCTGCAGTTGCTGATTGGCATGTTCTCTGATGGCGTGAACTCTCTAAAGGAGCTGGCCAATCAGAGAAAGGCTCGAGCTGCGGACATGACGAGAAATGCAGGGGCCAGAAGGGTGAGTGTAGTGTCAGACCCTGGCAGAAGGGGGCAACACAACACTCTGAGTCCGTTCCCCAGTCCGTTTCGGAGCCCCTTCCGCAGCCCCCTGCGCTGTAGCCCCTTTAAGAACCTGGGACATGCCACAGGCAACTGTGCTCTGGACCTAGACTGTGACGATGATGACATGAATCTGGGCTGCTTAATTCTTATGTTTGACCTCGTCCTTAAACAGATGGAGCTGCAGGATGACGGAGTGATGCTGGGTTTGGAGGGCAGTCTAGGCAGGGACATTGTGGGCATCATTAACAGCGTGTTCCAGGCTCCCTGGGGCGGATCACACACCTGCCAGAAGGATGAGAAGGCTCTAGAGTGCAGCCTGTGCCAGTCCAGCATCCTCTGCTACCAGCTGGGCTGTGAGCTCCTCCAGAGACTCACTCCCCCTGATGAGATACGTCTAGTGGAGCCTGCAGACAGTCTGGAAGAGAGTCTGGTCTTTCCCAGGTCAGAGCAGCAAACAGAGGAGATCACAGAGGAGGGGGACAACACATCTGGTGCTAATTCAGATAACCCTGGCAACCAGAGTCACTCCCCTGACAATCCACCCTTAAGAAATAACTCTGAAAGAAAATTCTCCTACCAGCAGCTTCCAGTTTCTCTCAGACTTATTTACACCATACTACAGGAGATGGCAAAGTTTGAGGAGCCAGACATTCTCTTCAATATGCTGAACTGTCTGAAGATCCTGTGTCTGCACGGGGAGTGTCTCTATCATGCCCGCAAAGACCAACCTCATTTCTTGGCGTATATCCAAGAGAAGATGCTTATTCCCTGCCTGTGGTCCATGCTGAAGTCTGAGTTCTGCCAGCTGGCCTCCCTGGCAGTGCCTCAGCTGCTCCACGCTCTCTCGCTGTCCCATGGCGCGGACATATTCTGGATGCTGGTGGAGAGCAGTTTCAACAGCAAGGACTGGAAGATCCGCTTTGAAGCAGTGGAGCGGGTCGCCGTGCTGTGCCGCTTTCTGGACATCGGCTCAGTCACTAAGAGCCACCTGCTGAAGTATTCACTGGCACATTGCTTCTGCTGCTTCCTGGCCAGTATAGAGGACGTCAACCCTGCTGTGGCTACCAGAGCAAGACTGCTGCTGGATACCATCAAACGTCCTTCACTACAGGGCCTATGTCTCTGCATGGACTTCCAGTTTGACACAGTGGTAAGGGACCGCCCCATCATCCTCAGCAAGCTACTCCTGCTGCACTCTCTGAAGCAGGATATCCCTGCACTGAGCTGGGAATTCTTTGTAAATCGTTTTGAGACGCTGTCCCTGGAGGCTCAGCTGCACCTGGACTGCAACAAGGAATTCCCTTTCCCTACTACCATCACAGCAGTGAGGACTAACACAGCCAATCTGAGCGATGCAGCAATGTGGAAGATTAGAAGAGCTCGTTTTGCCCGAAATCGCCAGAAGAGCGTTCGTTCACTCCGAGACAGTATAAAAGGTCCAGCTGAGTCCAAACGTGCCTTCTCCCTCCCAGAGACACTCTCTAACAAACTGCCCCACCTGCCAGGCCAGAGCTCTCCCCCAGAAGAAGATTCAGGCATCAGAGATCTTCTCCCAGAAGATGTAGGAATAGACCACCAGACCGTCCACCAGCTCATCATGGTGCTAATGAAGTTCATGGCGAAGGATAAGAGCAGTGCGGAGGCTGACATCGGCAGTGCCAAAGCCTTTAACACTGTGAAGAGGCACCTGTATGTGCTGCTAGGGTACGACCAGCAGATGGGCTGCTTCATGATCACCCCGCAGAAGATGCGCTCCTCCACCTGCTTTAATGCTTTCATTGCTGGTATTGCACAGGTGATGGACTACAACATCGGTTTAGGGAAGCAGATGCTGCCCCTTGTGGTGCAGGTGTTGAAGTACTGTACTTGCCCTCAGCTTAGACCCAACTTCCAGGAGGCTCCACGCTGTTCACTTTGGGCTCTAAGGCCACATATTAGGCAGATGTGGCTCAAAGCGTTGCTTGTCATCCTCTACAAGTACCCGTACAGAGACATGGATATGAGTAAAGAAGTtgtgctgcatctgatccacatcaccatcAACACTTTAAACGCACAGTATCACAGCTGCAGACCCCACGCCTCCGCTGGTCCACTCTACAGTGACAACTCCAACATGAGCCGCTAcagcgagaaagagaaagAGGAGGACAGTGTGTTTGATGAATCAGATGTCCACGACACTCCAACTGGAGCAGGCAACAAGGAATCCCAGACATTTTTTGCACGGCTTAAGAGGATTGGAGGAAGCAAGTCCGTTAAGTATCAGCCTGTGGAGCTCAATGCTCAAAAAAGCGAGATTGAGCTGGCAGAGTACAGAGAGCCAGGCACACTGCAGGACAGCCTTCTACACCCTGCACGAgatgacagcagcagcagcaagaaGAAGAGGCTGCAGGCCATGCACAAGCAGAAGTCTCTGGACATTGCTAACACGGACTCCATCCTTTTCAACCTCGACGAGCACCGCCGTAAGTCATGCATTGACCGCTGTGACTTGCAGGGGCCACCGCCTCCACCCCCTTCTTCCTCCTGCTCAACGGCCAGGCAGTCGCGTCGAGGAGACCGGCACGGCAAAGAATCCTCTGATGGCTCCTCGGGCCCCGACCGTCGAGGGTCTAACCTGCAGACAGACCACATGAGGCCAGTTATTCCTGAGGTTCGTCTAAGCTGCATGGAGACTTTTGAGGATAAGTCCACAGGGCTGGACTCTCCTCTGGTTGTCTCCGGTAGGCCTGGCAAAGAAGACGCTGACCTGATTGATCTGTCTTCAGATTGTGCGTCTATACCAGAGAAGCgctccattctctctctttccgatAGCGACTCCTTGGTCTTTGAACCCCTGCCACCGCTGCGCATTGTTGAGAGTGATGAGGACTTGTTTGAGGCACTTTCAATGCCGCCTAGTGGAATGCAGATCAAATCTGAGCATCCGTCACCATCATCCACAAGCACTATTCTACGCTTATCTCCAGTCATCCAAGTCAGTGTGGAGGACTGCTCTAAGGACAGATCGAGCAACTCTAGCAGCCTTGCCAAAGGAAGCCCTCTTCAGGCTTCTGATAGAAAGCCATCTCCACGTATAACCCCTACTGCTTCCTTGGAGCTTCCCGAATCCACAATCCACCCAGGCCTTGAGAGCCCAATGACCTTGAAGCAAAAACGAGACCTCTTCAGGAAAACAGCCCACGTGCCCGACACTTCAGTTGATGAAGGCATCGAAGGAGGAAGCCCATCTGGAAGATCCATTTTCCTTAACATCCCAGAAGACACACTTGACAGCCTGGACCCACTAAAGGCCAACAAACACGAAGGGAGTGTACATACGGAGGATGAGGACGACgttgaggatgatgatgacACTGGtgatgagagagaaagtgatccCAAGCCAGATGATGAGAGCGATGAAGCAGAGTTTAAGATTCAGATCGTTCCTCGCCAGCGTAAGCAGAGGAAGATAGCGGTCAGTGCCATTCAGAGAGAATACCTGGACATCTCGTTTAACACTCTGGACAAGATGGGAGAACAAAGCACAGACCCAGATCACAAAGCTCTGTCCAAACTGGAAAAGCCACGAGAATCGGCCTCTGCCCCCGCCCTCGAAGCCACAATCCCAGAAACAAGCAACCGCTCCTCAGTAACAAGTCCCACAGCTCAGTACCGGCAGGTGAAGCGAGGCTCTCTGGGCGCTGTGACGATGAGTCAGCTCATGAAAAGACAGCTGGAGCACCAGTCCAGCGCGCCACACAACATTAGCACCTGGGAAACAGGCCCGACAAAGACCAGCCTGCTGTCAGCTCCCAGCACAGTCAGCATGTACGTTCCTGCACCAGAGGACTTTAACGATGAGCAACCAACCAATATGGCGGACAGTAAGGGCTTCTTGATCAGCTCCACATCCTTTCAGAACCACAGCGCTGAGTCGTCTTCTCACAGTGGACGGACAGACAGATCTGAAGCGAGAGTGGAGCTTGATGTTCTCCTATCTCTCAATGATGAAAGGTGTCGAGACTGTGGAGCTGTGTTAGAGGAGTATGATGAGGAGACCCTGGCTTTGGCTGTTGTTGTTCTCTCCATGTTTATCCACCTGAGTCCGGATCTGGCTGCTCCACTGCTGCTGGACATCATGCAGTCAGTGGGAAGGTTGGCATCCAGTGCAAATTACTCTGGCCAAGCTGAAAGCATGCTGATTCCTGGTAATGCTGCAGGTGTAGCGAAGCAGTTCCTGCGCTGTGTGCTCCACCAGCTTGCACCCAATGGCATCCTGCCACAACTATTCCAGAGCAACATCAAAGATGGAAGCTTCCTTCGCACACTGGCCACGTCTCTCATCGATTTTAATGAACTGAGCTCAGTGGCAGCATTAAGTCAGCTTCTTGAGGGTTTGAACAACAAGAAGAGTTTGCCTGCTGGAGGTACAATGCTTCACTGCTTGGACAACATTGCCACCTTTATGGAGGCTCTTCCTATGGACTCTCCCAGTAATCTTTGGACAAACATCTGCAACCAGTTCCAAACCTTCCTGACCAAGCTTCCTGCAGTGCTGCCTCTGAAGtatcCATTGGACTCCAGTTTGAGAATCATCATTTGCTTGCTGAAGATTCCAACCTCAAATGCAACCAGAAGTTTGCTGGAACCCTCTTCAAAGCTGCTGAGTTTTGTCATCCAGTATGGTGTTTTCAGCCTGTCCTACCTGGTGGAGCTATGTGGCCTGTGCTACAAAACCTTCAGTAAGGAAAGAGACAAGTTCTATATGTCCCGCGTTGTCGTTCTGGAGTTGCTGCAAGCTTTGAAGTTCAAGTCTCCAATTCCTGACACTAATCTACTACTGCTGGTCCAGTTTGTATGTGCTGACATTGGAACTCGGCTATCTGAGTCCACTATCCTACAGAAGCACATGATCTCAGCTATACCTGGGTGCACAACAGCAGCCATGGAGTGTTTGAGGCAGTACCTCAGTGAGCTGCTGGACTTCATTGCAGATATGCACACTCTGACCAAACTAAAGagTCATATGAAGGCCTGCTGTCAGCCTCTTCATGAAGATACTTTTGGTGGGAATCTGAAAGTGGGTCTAGCCCAGGTTGCTGCAATGGAAATCAGTAAAGGCAATCACCGGGACAACAAGGCAGTGATTCGCTACCTGCCATGGCTATACCACCCACCTTCTGCCATGCAACAGGGGCCAAAGGAGTTCATTGAATGCGTGTCCCACATTCGCCAGCTCTCCTGGCTCCTGCTGGGCTCTCTTACTCACTGTGCTTTGCATCAGGGCTCAACGTCTTGTATGCCCATTCCACTGGACGCTGGATCTCACATTGCAGACCACCTCATTGTAATTCTCATTGGCTTCCCGGAGCAATCCAAGaCATCAGTGCTCCACATGAGCTCCCTGTTCCATGCCTTTATGTTTGCCCAACTGTGGACCATCTACTGTGAGCAGGCCGCTGCTGCCCCGGCCGggcagaaccagaaccagaatgAGTTTTCATCTGGAGCCATCCTCACTGGCCTGGAGTTCTGGAGCCGAGTCACGCCCAGCATCCTCCAGCTCATGGCACACAACAAAGTAATGGTGGAGATGGTGTGTTTACATGTCATCAGTCTGATGGAAGCGTTACAAGAATGTAATTCAACCATTTTTGTGAAATTAATTCCAATGTGGCTGCCAATGATTCAGTCCAACTTAAACCACCTATCTGCGGGTCTCCAGCTGCGTCTGCAGGCTATCCAGAACCGAGTGAATCACCAGTGTCTCCAGGGGCCCGGATCTGGCTCCTTTCCCATAGCCCTGCGCAAGTGGCTGCAGTGTACTCAGTTTAAAATGGCTCAAGTGGAGATCCAGTCATCTGAGGCCGCCTCCCAGTTCTACCCCATGTGATGTACAGAACAGTCCTATAGGAGCTTCTGTGAGACCAGCACACATCTGTTATCTGCACCATCCAACATACTGTTTTTCTGTCTGACTCCACATGTAGTTGTATTTAGAAGCTCAGCTTTTGTACCTATGGAATCAGCTGAACAGTCTGTGGGTTTGGACAGCAGCaacaatacagaaacagatgCAGACTAACAGTAAATCTTCAAAGAGGTCTTTATATTCACTTGTGAGTGTATCACCATCATCATGCATACATAGGAAAAGTTTTCATCTAATTCTGAAACAGTGTCACTGAATAATAAGGTGTCAAAACAGCAGAATGTGGTACATACAGATGCAGGAGTCTTCCTtagtgtgggtgagtgtgtgtttgagtgtgtgtggttatgTGTGCCTCAGCCAGACATTGTGAGTAGGTGTGAAAATCACTGGCTGTAGTGCACACACCTTTCATATGCATTATCAGAAAGCGTGAGAATAATGGTGTTAAATATAGAGGGCTTATAAAGATACAAAGATAATGaataatatgtttataatatattatgtttgTTCATTTCAAGTTTATtctgaaataaacaagaactaattttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113220 lncRNA downstream 69394 27856275 ~ 27859160 (-) True G84064
TU113219 lncRNA downstream 73170 27853356 ~ 27855384 (-) True G84063
TU113199 lncRNA downstream 108690 27815850 ~ 27819864 (-) True G84045
TU113110 lncRNA downstream 223666 27704226 ~ 27704888 (-) True G83973
TU113092 lncRNA downstream 313846 27613245 ~ 27614708 (-) True G83957
TU113250 lncRNA upstream 1463 27998584 ~ 28005722 (-) True G84083
TU113252 lncRNA upstream 1463 27998584 ~ 28005722 (-) False G84083
TU113253 lncRNA upstream 1463 27998584 ~ 28005722 (-) False G84083
TU113301 lncRNA upstream 62896 28060017 ~ 28114357 (-) True G84109
TU113293 lncRNA upstream 70095 28067216 ~ 28072498 (-) True G84107
XM_007257459.3 mRNA downstream 30614 27894955 ~ 27897940 (-) True fam181a
XM_007257380.3 mRNA downstream 48239 27875148 ~ 27880315 (-) True LOC103043263
XM_007257379.3 mRNA downstream 54848 27865545 ~ 27873706 (-) True otub2
XM_022673085.1 mRNA downstream 80110 27830628 ~ 27848444 (-) False LOC103043566
XM_022673100.1 mRNA upstream 75738 28072859 ~ 28079529 (-) False LOC103039744
XM_022673099.1 mRNA upstream 75738 28072859 ~ 28079529 (-) True LOC103039744
XM_007257368.3 mRNA upstream 75738 28072859 ~ 28079090 (-) False LOC103039744
XM_007257367.3 mRNA upstream 75738 28072859 ~ 28078215 (-) False LOC103039744
XM_007257357.3 mRNA upstream 89263 28086384 ~ 28090632 (-) True LOC103037016
TU113207 other downstream 89759 27834782 ~ 27838795 (-) False LOC103043566
TU112771 other downstream 1458391 26434472 ~ 26470163 (-) True cga
TU112655 other downstream 1924869 25992499 ~ 26003685 (-) True G83612
TU112362 other downstream 2887536 25037235 ~ 25041018 (-) False LOC103040243
XR_002650359.1 other downstream 3292673 24630879 ~ 24635881 (-) False LOC103026430
TU113436 other upstream 347468 28344589 ~ 28356545 (-) True G84215
XR_002650375.1 other upstream 678477 28675598 ~ 28694982 (-) False rps6kl1
TU113680 other upstream 1078355 29075476 ~ 29076115 (-) True G84392
TU113916 other upstream 1811408 29808529 ~ 29810277 (-) True G84579
TU113907 other upstream 1861856 29858977 ~ 29930575 (-) False hpcal1

Expression Profile