RNA id: XM_007257376.3


Basic Information

Item Value
RNA id XM_007257376.3
length 4319
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC103042002
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27881028 ~ 27894983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTACATGCCCTTGGGTACTAAGGTGCTTTAAACTTTTGAACTAAttaaatttagcaaaaaaattagtttcaatcatttttaaattagtgTTGTCAAATAGTGTTGGGAATACATAGTTTGACAGATACTTGTAGTGAAGGAAATTCTGTTCGGTTGGGTAAGAAGAGAATTGGATTCCTTTAGAATTAAATCCAATTAATCCATTAATCTCTAAAAActacatttactgtacatacttaaaaatgaaggtACAGCAATGATTCTTTGAACAATGCCATACAAAACCTATTTTCCATCCTGAAGGTGGTCAAGATGGTAAGGCTGATTAAGCTGTAAATAGgcatgtttttgtttaaatttgatTGGTTAGCCTGTGTACCTGACCTGACTGACCTAAacagaccatgctggttgaccatcatgacaagcaagaccaagctggtcaacAGGCCTGAACAACAAGACCAAGCTTAtcgaccagcatgaccagtttGATGCAACTGTGGAGTACAGCCAAAATCAAATGTAACATATATCACAAGCATGTCAAAAGCTGGTTGAGCAGCCAGCGTCCCAACACAGAATTGTTTGTGTGGATGACCAGCTTTTTAGCCACCTTGACCATCAAGGTCCTGTttagatcatatttataaaaagggCTAtaagtgtgaagaacctttaatTTTGCAAAGAACCATTACATCCActttacaacaacaaaaaacttgTAATGGTTCTTTACACgtctcttttaaaaaaagaatttttatggtaccaaaaaaaaaagtctttttttaacatcattcaaaaaactttttaaatggtttaatgcATCAAATTCTGATAACAGACTCAGATTCCCCATGCACAGAAGTTTACAtcgtgtgtaaaaaaaaacgccACAGATTAAGCTTCGGAGGTCTGACCAAACACAAGCCATGCTGTATGTGCTTCTTAACTGTTGCATCTTCAGGGGTCTGGTCTCCAGTCTAATTTTAGGAAGCTAAGGATAGCTGGGAAACTATTATCAGTCTTATCTGTGTCTGTCTGGACTTCTTCCAAGAAGGACATTCAGCTTATTaaagaagaagtaaaaaaaaagaagaaaagtaaGAAAATGTGACCTTTGGGTTAATTGCTGGGGCATGGGAgtctatttcattttttttccttggtAGGATTCCAGGTGCTTGTGTGCATCATTTAATAACAGTTCAGGTTTAGTGTgctcatgttttgttttatcgTGGCTGTTTCTTTGGAAGCCTACGTGTAGGAAACATGCCACTTATGCCATTCTCTGTATGTCTGAACCTTTAGCATTCTAGACAGGGTGATTAAATTTCCGTGTGCTAACAGGGAAACACAGCACAAAACCGGCCCACAGCATGATGTCATTTACATAGGCTAACATGATAAAGAGAGTTGCACTAGCAACACAAAAGCCAGAAAGCTGTTGAGTGCCTGGTCATACATGGTAATCCTCGACAGCCTTCTTCCCCACAGCCTAAAATTACCACAAAGAACAGCTGAGACCCTGATGATtgctcccccctcccccctactctttctctctctctcgcgctctctcacTCAGTCagtctttctctatctctgtgACTATCTCTCGCTCAGTCGCAGGCGCTTTAGTCTCATTTCACAATGACACGCTTTAGTTACTCGGAATATTTCTCCTTATTTCATTCAAGTGGAGCAGTGAAGAGCAGCATGGCGCACGCGCCGCTCAGCCAGTGTGTTGACAGCGGAGGGCGAGCAGGGAACCTCAGCGACGTCACCTCAATCCCCCCAGAAGATGCAGAGCCTATAATACTGGCGATTAGGAAAGGTGATGTGGAGACAGTGTCTGAACTAGCTTCCTCTGCATCCTGCATCCAAACACAGACAACAACAGAGGACTGGACGGCCCTGCATGAGGCTGCATACTGTGGCCAAGCTGACTGTGTTAAAGCTCTACTGAAAGTTAAACCAACTTCAGTAGATAAGCGCACGCTCCAGGAGCAGACTGCTCTTCTGATTgcgattgatggaaaacacgtGGAGTGTTTGAAGTGTTTGTTGGTGGCAGGTGCAGACCCAGATATtagcaataaaaacaaagaCACACCACTTTATAAAGCTTGTGAACAGGAGAGCATTGATATAGTCCGAGTACTTCTGGCGTTTGGAGCTGCAGTAAATCAGCGCTGTCATCGGGGGTGGACAGCTCTCCATGAAGCAGTGAGGCGTGGCAACACACAGTTGTGCGAGACCCTCTTTCAGGCGGGAGCTGCCATCAACCCCCCCAGCACCTATGGCATCACTCCTCTCATGGAGGCCGCTCGTATGGGGAGAACAAAGATTGTGGAATACTTAATCCAAAAAGGCGCTAATGTGAACCTGCAGTCATGTGAAGGAACAACAGCACTGAGTCAAGCCAGTAAGCATGGTCATCTGGATACAGTGGAGCTTCTGCTCAGTCACCTTGCAGATGCCAACAAAGCCTCCAACTCTGGACTCCTGCCTCTGCACATTGCTGCCCAGTATGGCCATAAAGAGATTGTCTCCTTGTTGCTGCCCGTCACAAGTCGATCCAAGATACGGCAAAGTGGGATCACACCGCTCCATCTGGCAGCTGAGTTCAACCATATAAATGTTGTGTCTTTCTTGATCAGTTCTGGGACTGATGTTAATGCCAGGCTCTCGGATAAACGCTCGTCCTTGTTCCATGACCATCGGAGCACAGCTCTGTACTGTGCAGTGGCAGCTGGTAATGCAGAGCTTGTGGAAGCCTTGCTCAAGGCCGGTGCAGACCCCAACCTGGATCCCCTCAGCCCACTGATGGTAGCAGCCCGCCTGGGCTGTTTTAGGACTGTTTCCAAACTGGTGGAACATGGAGCCGATGTTAATGCTCGCATACCAGCCCATCCCACAGATTTCCCAGGAGTATTGTTGTGTACGCATCATTTGGGAATTTTACAGTATCTGATGGACCACGGCTGTAAGGCACAGGACTGTTTTAGATGTTCCCATAAGGACAACCGACAACATTATTCCAATAATCAAATCAGACGGGAAGACAGGGATCAGAGGACTCCAACAGTGACTACAAGTGCAAATCCACCACAAACAACATGCACCGAATCAACCACCAGAAATCTACAGTTTTGTGAATGGATCTCCTCCACCTCTATGCATCACATGGCCGCACCTCTAATCAGCCTGCTTTTGGACTATGCTGGGAATGTCCACCTGTGTTGCAGAGTGACTGAACAGTTAAACAGGAAAGAAGAGTGGACTGAAATTAAGGAAAAAGCATCATCTCCTCGCACACTGACGCACCATTGCAGGCTGAAGATTCGTGAGCAGATTGGTGCCCAGAGGCTAACCTCCATGAACACGCTTCCACTACCAGCCAAACTACTCCAGTATCTGCACTGTTCACAGAGCAGCACTAGAGAATACCCAGATCTGATGCTCGGGTCAGATCGAACACAAAATGTAGGACTGCAAAGAAACTTTTGATTCCTTATTGTGTCAGTTTCTACACACATAAGACtttgaaaaaaacacaatggtAAAACAActaaatactgaaatatgtaaATCAGGGAATGTCTGAAAATGCTGCTTATGTTACTGCTTTTTGGTGGCTGTGTTTATGTTGATTTGATTGTGAGAATTATTGATATTCCGTTGTAGGGTATGAAGAGATTTCATCGTCAGGCATTCAGTTTGTAAGTTAACATATATTTAGGTTGAATGATAATTTATAGGTAAACAGTCAAAAATAACTGTTGTCCCTAATAGCCTATACACAAAACCACAAGCCAAACGTCTACAGGAATTGCACTAATTGCACTGGGAAACACAACTACTGAGTGAACTTTAAATACAGTACGTTTTGACTGaatatcaaagaaacttattgtaaattatatattatgtcattattgtgtgtgtgtgtgtatcagtgtatgtgtgtgtatttgtgttcagTGTGccataaaagaggaaaaagagcaTTCATACCTAAGTGACTGTGAGCTCAGGAAACTGTTACAgaaatgtgtttgttatatGTGCCTGTTCTTGCTTGCCTGCTTGCtattttgtttacagtaagtgtgtgtctgtgtgtgtgtgttttactgtattgaTTGATGCTGGATTTACAGTTGGAATTGCTTTACACTCACAGTGCATGAAAGTGTTACAGGCTTAATGAAGTTGTTTGAATGTGCACAGTATCATAAATTGGTACAATGAACTGCAACAGAGGACAAGggtgtgaaaataaactgagattcttttactgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650374.1 lncRNA upstream 36823 27832050 ~ 27845966 (+) True LOC111193235
TU113132 lncRNA upstream 50543 27831977 ~ 27832246 (+) False LOC111193235
TU113131 lncRNA upstream 51205 27829449 ~ 27831584 (+) True LOC103044189
TU113127 lncRNA upstream 60578 27820870 ~ 27822211 (+) False fam98b
TU113109 lncRNA upstream 177908 27704254 ~ 27704881 (+) True G83972
TU113147 lncRNA downstream 28086 27923069 ~ 27923358 (+) True G84001
TU113373 lncRNA downstream 406750 28301733 ~ 28360989 (+) True G84164
XR_002650284.1 lncRNA downstream 433792 28328775 ~ 28331408 (+) True LOC111193142
TU113440 lncRNA downstream 478965 28373948 ~ 28374517 (+) True G84219
TU113497 lncRNA downstream 692413 28587396 ~ 28587954 (+) True G84264
XM_007257378.3 mRNA upstream 12816 27860194 ~ 27869973 (+) True ddx24
XM_007257377.2 mRNA upstream 24048 27855741 ~ 27858741 (+) True LOC103042318
XM_022673086.1 mRNA upstream 27407 27848677 ~ 27855382 (+) True LOC103043868
XM_007257383.3 mRNA upstream 53327 27824256 ~ 27829462 (+) False LOC103044189
XM_022673084.1 mRNA upstream 62100 27815832 ~ 27820689 (+) True fam98b
XM_007257375.3 mRNA downstream 11843 27906826 ~ 27921173 (+) True LOC103041699
XM_022673097.1 mRNA downstream 115531 28010514 ~ 28072594 (+) True LOC103040475
XM_007257365.3 mRNA downstream 184590 28079573 ~ 28085275 (+) False ttc8
XM_007257366.3 mRNA downstream 184591 28079574 ~ 28085275 (+) False ttc8
XM_022673098.1 mRNA downstream 185712 28080695 ~ 28085275 (+) True ttc8
TU113122 other upstream 63242 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1135038 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1135038 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1374664 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1483522 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 1075281 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1075296 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1104519 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1109111 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 1145996 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile