RNA id: XM_007257378.3


Basic Information

Item Value
RNA id XM_007257378.3
length 4151
RNA type mRNA
GC content 0.43
exon number 9
gene id ddx24
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27860194 ~ 27869973 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGTGGGTTAGCAATATCTGGCAACCCTGTTTTGTCGTCACTGGTGTAATGGCTGCGTCCGCGTGTTGGGCATGTGTGTGAGGAGCTGTGCTTGGACACGAGCAGCGTATTAAACAGGAGGAGAGGATTAATACTaaaaaataaagatgaagaCCAAAATGTTGTCAAAGAAGCGGCCTGGATCTGGCAAAAAAAGAGGGATCCTTGTAAAGGGCCAATGGAAGACTGTTAAGATAGATCCCAGCATTTTTGCTGATGAGGCCATGGGAGAAGTCGTTGTCTTCGAAGAACTGACAGATTATTCATTGGTTGAATCTAATAAGACAGTTGCTGTGTCCAAGTTGCTACAGGAGTCCGtagggaaaaagaaaagaaagagcaacaaGAGAACAGCCAGAGAAATAGAGGACGAAGAAGGACTTTTGAATGAAGAATTTGCAGAGCAGTcatctgatgatgatgatgatgttgaaaAACTGGATATTGTAGAGAAACCAGCTAAAAAgcggaaaaagaaaaagaagaaaaccaaGGGGAACACAGTAGCGGGTATAGAGAGTCAAGACACTTCAGAAGGTTTGTCCAATCTGACCAAAGAAGGAGAAGATCAAACACAAGAACAATCTGAAGGAAGTTGTTCAGTTACAATATTGACGtctggaaaaaagaagaaaacaaagaaacagaaatCCGCCACAGAACAAGCCATGTCGTCTTCACAAGTGATTGAAACTGATGCCCAAGTGAACCCTGTTGGCAAGTCTAAAAGAAAAGGCAAGAACTGGACAGATGCTGCCCTCTCAAACTCAGCAGCTCAGGATTCAGACGTATCTGCATGGAAAGACCTGTTTGTACCTGAACTTGTTTTAAAGGCACTAAGTAAACTTGGATTCTCTGCACCGACACCAATTCAAGCTCTTGCTCTTCCTCCTGCCATTCGAGATCATATGGATATTCTGGGTGCAGCAGAAACAGGAAGTGGGAAGACATTGTCATTTGGAATTCCAATGATTCACAGGATATTAGAGTGGAAGAAATCTGTCCATGCTAAGAATGCAGGTTTATCCACTGGGAAGAGCACAGAGTCTGGATTAGACCAGGCAGATGAGGAGATGCCAGACATTGAAACAGACTCCATAGCACAGGAGGATGGTAAAAATGATGAAGATGAGGGGATAATATTGGAGGCAGCAGAAGATGGAGAGGAGATGGCTGGTGAggaggaagatgatgatgaagaagaacaGCAGAGTCGAGACGATGGCTTGGCAACTAATGATGAAGGTGTATTGGACATTGAAACAAAGGGGACGGAGAAACAAGACAGCGAGAAAAGGCCTCTGCTTGGACTTGTTCTCACTCCTACTAGAGAATTAGCAGTTCAAGTCCAGCATCACATTGATGCTGTGGCACAGTTCACAGGTATAAAAACTGCTATTCTTGTGGGAGGCATGGCACCACAGAAACAAGACCGGGTGTTAAAGCGCAGACCGGAGATTGTAATAGCAACACCAGGTCGTCTGTGGGAGATGATTCAGGACAGGCACCCTCATTTGCGTAATCTGAGGCAGCTCAGGTGTCTGGTCATTGATGAAGCTGACCGCATGGTGGAGAAAGGCCATTTTGCTGAGCTTGAGAAATTGCTGGAAATGCTCAGCACATCCCAGTTCAACCCAAAGAGGCAGACCTTTGTGTTCTCCGCCACGCTGACTATGGTCCACAGTTTACCTTCCCGCCTGGCACGGAAGAAAGgaaaacagctggagcagcgCAGCAAGCTGGAGCTCCTCATGGAAAAAGTGGGAATCAAAAACAAGCCTAAAATCATCGATCTCAGCCGCAAGGAGGCCACAGTAGAGACGCTGACTGAGACCAAAATCCACTGTGAGAAGGAAGAGAAAGATTTCTATCTCTACTACTTTCTTCTGCAGTACCCTGGCCGCACAATGGTGTTTGCCAACAGCATTGACTGCATAAAGAGGCTTACGTCGCTGTTGACTATTTTGGACTGCAACCCACTACCACTGCATGCCAACATGCACCAGAAACAGAGGCTGAAAAATCTGGAGAGATTTGCAGAGAGGGAGAGTTGTGTCCTCCTTACCACGGATGTTGCTGCTCGAGGGCTTGACATTCCAGATGTTCAGCATGTCCTTCACTATCAGGTTCCACGGACATCTGAGACTTACGTCCATCGTAGTGGACGTACAGCTCGTGCTGCTAAAGAGGGTCTCAGTTTGCTTCTGATTGGGCCAGATGATATGATCAACTTTAAGAAGATCTACAAGACTCTGGGGAAAGACGAGGATCTTCCAGTGTTTCCTATTCAGAACAAATGCATGGCTGCAATTAAGGAACGGGTTAACGTAGCCAGGGGCATTGAGAAAATTGAATACCACAACAGCCGAGCAAAGCAGCACAATTCATGGTTGAGGCAAGCAGCAGAGGAAATGGATATAGACGTAGATGATGATTTGCTTATGGGAGGTggaagagatgagagagaggacCGGGACCAACAGAAGCTAGTGAAAGGCATGAAGAAACACCTGAAGCACCTGCTCAGCCAACCAGTCTTCAAACCCCACATGCAGACAAAATACCCGACTCAGATGGGCAGGCTGCAGCTGCCAGAGTTACCCCTGGCCAGTGAAACAGCATTAAGCAGTTTGACCAATCAACAGCgtaaacaaaaacagcagcaaaagCGTAAACTGTAACATTTGGAATATTAAACAGAATTGGATATATGggatttgtgtaaaaatgtcaaaaagttTTTGTCCTGTGTATAGAAAATGCCATTAAGCAAACAATTTTCCTACTGTTTTGAAAACTATGTTTTGtgtatctaatttttttttttttttaccgaagTGGTGGTGGTCCAAGCCCTATTTTCAGTGCTCTCTATGCTTATAGAGAATGTCATAGTGAGAGGTCTTGTAGAGAAGGTATATGGAACATTCAGACCCCTCTGGAATGGTGTGGTACACAAGGTGGCCATCACTGCTGTCCATAGATATGATACACAAACTAATGTCCAGTGCCTCAGACAAAGCCAGAATCTCCACATGGTCACACTCCATCGCCATGGCTTCTACTTCCTAAGAAATCAAAAGAGTAACTGTACAGGTCAGTGCTGCAAAGCATGGAAAGACCTGGCTTCTATGCATGCTCTTTATAACATGGGTCTCACATCTTATCCACAATAAATGGGCGGAGGTGCGGGTTTTAATTCCAATCAAACATACCTGATTCCATCTGTTCTATCACCTAATCTCAGCCTTTAAACTGGCTTCCTCGTAAAGGATGTGCTTCTGCTTGCTTGGAATTAAAACCGGCAGCCACTACAGCTCTTTAAAATTGGTGACTCTGGCTTTAAtacatgataaaataaatactgaccTGAGTACAATAAGCTTTAAGGTTAGGGGCTTCCAAAAAGTGTTGGAAGAAATCTGCATGGTTCTGCAAGTGTGCGGAGGTGAGGAGTCTCAAATACTTCACCATGCTGTCTGAGGTAGTGTGATCATTGAAAAACCCCAGAAGAGTCTCTTCACAGTCATCTGCTTCAAGCTGATCTAGGACCCTGAGAAACTTAAAACAGAGCCAAACATTTAGTTAATACTTCTGCTgtcaacataaaaaacatgcaCACATTTCCTTTCCAGGTTGTTAAAGGTGGAACATGGAGCTAGTGTTAATTTCCTACAGTAAAGCTCtaaattctttctctctctaccaaaaataacattttaatgatcATCACAGAATAGTTttgtaattaaaacaatttaagtGATTAACACcacaaatagaaaataatgtaattttttccaATTATACTTAAATGTTCATTATTAAAAAGCTCAATTTTAAAAGGAGAAATCTAGTGTTAAATGGGTACAAATGTCTGTCAAATAGACCACCTTCGTTCAGAATGAATTCAGAGGAAATGCATTAATTCAAACTGTgtcaaaaatatttgtaatacttatgcatttccactgaattaattttgcaatctgtgcTCCTTAGTCAACATATCATGACttgattttaatttgatttggtgGCACCCGAAGAACTGCCTTAAAGTACCGTGTGTATacacattgtttttaataaagtaccTGTGCacctgttta

Function

GO: NA

KEGG:

id description
K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650374.1 lncRNA upstream 14228 27832050 ~ 27845966 (+) True LOC111193235
TU113132 lncRNA upstream 27948 27831977 ~ 27832246 (+) False LOC111193235
TU113131 lncRNA upstream 28610 27829449 ~ 27831584 (+) True LOC103044189
TU113127 lncRNA upstream 37983 27820870 ~ 27822211 (+) False fam98b
TU113109 lncRNA upstream 155313 27704254 ~ 27704881 (+) True G83972
TU113147 lncRNA downstream 53096 27923069 ~ 27923358 (+) True G84001
TU113373 lncRNA downstream 431760 28301733 ~ 28360989 (+) True G84164
XR_002650284.1 lncRNA downstream 458802 28328775 ~ 28331408 (+) True LOC111193142
TU113440 lncRNA downstream 503975 28373948 ~ 28374517 (+) True G84219
TU113497 lncRNA downstream 717423 28587396 ~ 28587954 (+) True G84264
XM_007257377.2 mRNA upstream 1453 27855741 ~ 27858741 (+) True LOC103042318
XM_022673086.1 mRNA upstream 4812 27848677 ~ 27855382 (+) True LOC103043868
XM_007257383.3 mRNA upstream 30732 27824256 ~ 27829462 (+) False LOC103044189
XM_022673084.1 mRNA upstream 39505 27815832 ~ 27820689 (+) True fam98b
XM_007257384.3 mRNA upstream 46286 27770793 ~ 27813908 (+) True spred1
XM_022673087.1 mRNA downstream 11055 27881028 ~ 27894983 (+) False LOC103042002
XM_007257376.3 mRNA downstream 12816 27882789 ~ 27894983 (+) True LOC103042002
XM_007257375.3 mRNA downstream 36853 27906826 ~ 27921173 (+) True LOC103041699
XM_022673097.1 mRNA downstream 140541 28010514 ~ 28072594 (+) True LOC103040475
XM_007257365.3 mRNA downstream 209600 28079573 ~ 28085275 (+) False ttc8
TU113122 other upstream 40647 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1112443 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1112443 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1352069 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1460927 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 1100291 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1100306 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1129529 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1134121 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 1171006 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile