RNA id: XM_007257384.3


Basic Information

Item Value
RNA id XM_007257384.3
length 5590
RNA type mRNA
GC content 0.42
exon number 6
gene id spred1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27770793 ~ 27813908 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTAAACAACAAATCACGCTAGTTGATTCGGTCTAAAAATGAGTTTGCTGTTTTGTTAATGGTGTTTTATTCGGGTTTCGTCGCGGAAGGATTTCAGCGGAGAAGTCAGGCCAAACGCTTCCGCCCAGTTTTCCGAGGTGTGCATTGCCTGAGTTGAAAATGGAGTTCGTGTAGCAGCACAGATCTTCTGAACTTCCCGAGGAGGAGACTCTGTTAATCTCGCTATTTCTTTAACGCGAATTCGTTGGATACTCAATTAAGGACAGATATTTATCGTTTCGTTCGTTGTTTTTGAGTGCCTGCGCTCGAGCCAGCTAGAGAGTTATAAACAGGAGCAGCgctgttttgtgttttctagTGTTGGCTGAAACTTCAAGTTGccgtggggagagagagaaagagagagaggggagttATATAGTATAACGTAGCGTAGCTCGATCTCCAGCTAGCCGGCTCACGGACCGTGGCAGATTTAGCTAGTAGCTACCTATCTATTTCTCGCTTTGTTTTGCTTGCAATCTGAAGATCAGGACTGCAATTCTGTCTGGGATTTGCCTGTGTTCGCAGATCGAGGATGAAGAGGACAGCCACTCGTTTCCAAATGGATTTTACTCATCGGGAAGATAGAGATCAGTGGCTGCGGTCGCCGTTCTTATTCTGAACTCGCCTTGTGGGAGAAAACTGGAAGCATGCAGCGCCCCAGCGCTACACAGTTGCTttgtgattaataataaaacaaaaaaaaaactggcactTTCTTTTAATGCGAACGAAAAGAAAATGGTGATATTTGCGGATCGTTTCCCAGCCTTGACTGCGTCGTCGATGCTGTTTCCAGGATTTGGATCCCCGTGAGAAAAAAATGAGCGAAGAATCGGCAAATCCAAACAACGATGACAGTTATGCACGTGTGAGAGCAGTGGTCATGACTCGGGATGACTCCAGTGGCGGATGGCTGCCTCTGGGAGGCGGAGGCCTCAGCTGCGTGTCAGTCCACAAAGTCAGCCGGCCAGACACGGACAGCTCCAGCGGCGTGGATTTCCTCATCCAGGGGGAGCGTCTCAAAGACAAATCGGTTGTGCTGGAGTGTAACATAAAGAGGGACCTCGTCTACAACAAAGTCACCCCTATCTTCCACCACTGGAGGATTGATAACAAGAAGTTTGGACTGACTTTTCAGAGTCCAGCTGATGCTAGGGCTTTTGACCGGGGGATACGGCGGGCAATGGAGGACATTAAGCAAGGCTGTCCGGTGTACAGTGACTCAGACACTCCGGAAGATGGATTACAGGTTAATCAGGATCCCCCCTCCATCTGCACACCTATGAGAGAGCCCTTCTCCCCCCATGGCGGAGTGGTGTCCACCGAGCCTTTCCGAGGCTGTTATGTGCGTGCTCAGCCCTTCGATGAGTTCCCCAGCCCCAACCGCCGCTACCTGCCCCCCCAGGTCTCCTTTAACACCACACGCCACGTAAGCTTTCACATGGATGACGAGGAGGTGGTTCGCATTAACCCACGCAAGGACGTTCTTATCCGGGGCTATGAGGACTACCGTCACCCTGTCATGTGGAAGCAGGACATGGAGCGAGACGATGGAGATTTCTCCACCACCTTTTCCAAACTAGACAACAAGAAAAGTGAGTACTTGTTTCCGGAAGGGCCGGAAACTCACCCAGGCGGCAAGGACTCTATTAAAACCCAGCAACCCTCCCCTCTGCTCAAGTCCAAGAAGTCAAGGAGACGCAGGGAGGACGGTGAACGGTCGCGCTGCATCTACTGCCGCGAGATGTTCAACCACGAGGATAACTGGCGGGGTCAGTGCCAGGACGCGCCAGACCCCATAAAGCAGTGCATATACAAAGTCAGCTGCATGCTGTGTGCCGAGAGCATGCTTTACCACTGCATGTCTGACTCGGAGGGCGACTTCTCGGACCCGTGCTCTTGCGACACCAGCGAAGAGCAGTTCTGCTTGCGCTGGCTGGCCCTGCTGGGTCTGTCCCTCATTGCGCCGTGCATGTGTTGCTACCCTCCCCTGCGGGCCTGCCACCACTGCGGAGAGGCCTGCCACTGCTGCGGGGGGAAGCACAAGGCCGCCGGATGAGTCCAGCCACGCCATCCCAACTACACCAACGGCCACGTGGAAAACCGCCggcattgtttttttcattcaccTTCAGGCAGGTGAGGTGTTCTCCCACCCGCCGCTGGAGGCTTTGGAGATTTGATTTGGCTGAGAGCAGCGGAAGCAGACACCCGTCAGGTGGTCTTCTCGGGCTCTCGAGAGCTGCGGCACGGAGCTCATAACATGAGGAAAGGCGTTTACAAAAATGAACTTGGAGAGATCACTAAACactcaaacatgcaaaaaaaaaaaaaagaaaatggaaaaaaaaaatcacacaacatagaaaaaaaacaagtcacCATGTCTCAGACTGTCATTACAGATATTGTGTAACCTTTGTGAAGGAATATTATTGTCTTTTGTACAGAGATCAAATCtataacaaagaaaacaaaacatttggttGTGCATACAGAGGCTCTGCTGTATGGGTATGCTAAAAGGGATATTTTCTTGCTTTTCGTGAATTTGCAGTAGGGTAAAAGTGGCCTTTTCTTTCGACTTGAGCATTTGCTGACCGTGTAATTatagacaaaaacaacaaaaagtgcACTAGATATGTTCTCCCATGAAAGGTAATCCTCATTAATTCTAATGGTACATTTaacgaaaaaagaaaaacactttgatcaagttttaggagttcagattgattttgttttctgtgatgGGTGTGTACGCAGTTTGTTTTACCTGCTtttctttcattgttttgtAAAAGACAGTAACGTCATTTCTTTTTTGAAATGCTAGTGTGACATAATGAATTTTGTAATGAATTGtgctaatgtttaaaatgacacCTTTCTCGTGTAATTGGCAAAACTATTCGGACCACACGAGTCGGTTTCCTCATTCCCGCATACAGTGGTTGTGGTACGACAGCTGTGGTATATGAAGTTCTTTATTCCCAGGTCAACAAACATTTTCCACAATAAGATTGATGGTGATATCTTGCAATCTAGTCAGAGACCAATTGCAGAAATTTGCAGACTTTTTTCCCCTTTCAACTTCTCAATTTAATTGCATTTGTCAGAGTGAAACTGGGTTCTTTTcggcttttaattatttttgagcTGAAATTGTGCTCAACCAgcaagtttttcttttttttttttttattgactgacaatattttacaaattcTTACGATCATGGTTAAAGGGTGTCCATTTTTCATTGTTAAACAAGGCACTTATATTGCGTTTTAAATAGGATAACCCTGTATTATTTGGTTGGATTGTTCTTCGTACAAAGCACCCCTCAAAGAAGCACTAATTTCCAAGCTTTGGTTACAGCTCCATCTACACATGTATTCCATACAGCATGTAGTTTATTTGtacttatttctttctttctgtctttgtttGGAGAGCTTGTGTAAATGAAATTCTTGATGCCAGAccgtttataaaaaaaaaaaaaagagcccaCGCAAACCTCAAACCACATCCCACATGCAAACCTCCCGAACACAAAACTGCCACAGCAAAGATGATGATAAATCATGTCAGTCAGTAACTATAATTCAAAAGGATTTTGaagattttgtttttaactAGAGAAAAGAATTCATGTGTTTGATTAAGCTCGGCCTTTCGCATTCACAAAGCATTAAGAAACTCAGTTGAACGTCAGGCAGTTTAGCCCTGGGTCCAGTCTACACTAAAAGGTTTATCACACAAACAAAAGCAAGCTTATATTCCTGTTAGCAGGAAAATCGCACCCACTATACTACTAAGAGGCCAGTATAAAAAAGCAGTCCCAGTAAGACCTGTCCTGCATATCTCCCTATGCTCTGTACAGCTACACTTTACATCCACTTTACTTTCTATGCAACTATTTCCATGAGAAACACTTAGACCTCTTCATACCAGTCTGTGATGTGACACTTTAATATAGCAGATGTTAAACTTGGTACCAaacttgagtaaaaaaaaaaaaaaaccctatgtAAATACATAACACTATATTTAAGCAACAATAATAATCCCATTCAAATTTTTAAGAGAGAGTTGTATTTATCACCGCTGTCAGTATATATTATAGCTTGAGTTTGACAGCATTATGTACATAGGTCACCTTTTAGTATTATTTCACATTGAAAGTAGAGGGAGTACATGATGAAAATGGTTGGGCTTTTAATAGAGATTCTCTCTAGTTTTGTATTGCAAAAAGAAGGCTAGGAAGCTAATGCGGTATAATAGTGACAGtccatttttaaaaggttttgtcATATGAAGCTGCTAGAAACAATCACTAATTTTGCATTGAGAGGATAAATAAAATTCAGATATGGATGACTGTTAAAACATTATATAGTTCtttgatatataaatatatataatattgatcTCAGTTGTGTTCTTTGATCTGTTTTTtcgttgtttgtttttgttttgtttttaaacacacccatgtTTTTATGTTCATCCACTCCTTCTTTATTTACGTCTTTCCTGTATTGTCATTGGATTGCATTTTGTATTGCAAGCTGAACCAAGGTTTGATTAAAACCTTAACAAAACTTGCTGGCTGAGAAGCAAATTGTAGAATAGGCTACATTCATACGATTCTATCGTTAGACGAATACTAATAATACCTAGTTTCATTCTGCGTTGACCAGCACAGGGCGACCACATGTAATGTGCTGTATTTAATATGCAACctgtctgttttctttcttaccTTCCATTCTCTCTCCACCCGGCCATTAACTTAGCATTTATCTGTCTTCAGTTTTAACCACTTGCTGCTAGTGTatcgtttttattattatgatttttttggaCATTGTGCATAACTCTGGAATGCATAAAAGATGAACATTCTTTACTGTTTAGTTTAGAAGAATTGCGTATGTAAATGAGTCATTTCAGTGTGATCTAAAAAAACAGCTACTTTCGCAGCAGTTCAGTGGTTTCTTTGGAGTTCTCCGATGCTTTGGTGCACTGATGTATGTAGCTAGGCTTTTTTCCTTTGCATAGCGCTTGATGATGTAAAGCTCACGTGATTAGTTCTAAgttgtgaaaaacatttgtgtttatGGTAATTGCAGTATAAATGGTACTCTGATGATTCCAGTATGAACACTGCCTGTTTCTTTATCTGCATCTCTAAGTTTTAGTGCCATTGGCTTCACCCACTGACAACCTCGAAAAAGTGCCTCACGTCCATCATAATTTCCATCCGAAAACTTAACAGCTCTTGCTATGGTTGTATTGGTTTATACACGTCTAGGTATTTGTATCATGGTTTGAAAATACCAAGTAtatgatgtaatatttatagTTCAGTAACTCATGTCATAGTTGTATTTTCTTTATACAGATGTAGCTTGTTACGtttcataaatatataatgtaaatatgcaTACAAATGTTTGTAACTGTTTTTATGTTACATCATACACTTGTAATTtgacataaaataacattaccaTAATAAAAGGTGAGTTTTAA

Function

GO: NA

KEGG:

id description
K04703 SPRED; sprouty-related, EVH1 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113109 lncRNA upstream 65912 27704254 ~ 27704881 (+) True G83972
XR_002650373.1 lncRNA upstream 155226 27609242 ~ 27615567 (+) False LOC107197843
XR_001518812.2 lncRNA upstream 155226 27611543 ~ 27615567 (+) True LOC107197843
TU113068 lncRNA upstream 155243 27612556 ~ 27615550 (+) False LOC107197843
TU113070 lncRNA upstream 158338 27604237 ~ 27612455 (+) False LOC107197843
TU113127 lncRNA downstream 6962 27820870 ~ 27822211 (+) False fam98b
TU113131 lncRNA downstream 15541 27829449 ~ 27831584 (+) True LOC103044189
TU113132 lncRNA downstream 18069 27831977 ~ 27832246 (+) False LOC111193235
XR_002650374.1 lncRNA downstream 18142 27832050 ~ 27845966 (+) True LOC111193235
TU113147 lncRNA downstream 109161 27923069 ~ 27923358 (+) True G84001
XM_007257394.3 mRNA upstream 264502 27428752 ~ 27506291 (+) True c9h15orf41
XM_015607875.2 mRNA upstream 264502 27429248 ~ 27506291 (+) False c9h15orf41
XM_022673079.1 mRNA upstream 264502 27431558 ~ 27506291 (+) False c9h15orf41
XM_022673078.1 mRNA upstream 296609 27429241 ~ 27474184 (+) False c9h15orf41
XM_022673069.1 mRNA upstream 873725 26795808 ~ 26897068 (+) True stxbp6
XM_022673084.1 mRNA downstream 1924 27815832 ~ 27820689 (+) True fam98b
XM_007257383.3 mRNA downstream 10348 27824256 ~ 27829462 (+) False LOC103044189
XM_022673086.1 mRNA downstream 34769 27848677 ~ 27855382 (+) True LOC103043868
XM_007257377.2 mRNA downstream 41833 27855741 ~ 27858741 (+) True LOC103042318
XM_007257378.3 mRNA downstream 46286 27860194 ~ 27869973 (+) True ddx24
TU112857 other upstream 1023042 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1023042 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1262668 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1371526 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 1521697 26235498 ~ 26249096 (+) False G83602
TU113122 other downstream 1897 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 1156356 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1156371 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1185594 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1190186 29004094 ~ 29025114 (+) False LOC103045392

Expression Profile