RNA id: XM_015607875.2


Basic Information

Item Value
RNA id XM_015607875.2
length 1506
RNA type mRNA
GC content 0.48
exon number 12
gene id c9h15orf41
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27428752 ~ 27506291 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAAGAGAGCTTTTTTACCTTTACTTCGTATTTATTCAGCATGTCAGCAGTCAATGTGGAAGCTTGTTTGATGAAGATTTGCAGGGCAGAATACAAAACAATCGCAAAATTCATTGAGCAGCTTCGACCGACTCGGCAGTGTATGAAGATCCTGAAGGACAGATTCCCCAATCACTCGCAGTCCACTCTTCTGAGCATCTTCTCCCTGGAGTACCAGaaaagaatgaaaagaaCTCTTGTGAAACACCAGGATGTCGTTGAAGACTACTTCCAGAGGTACCGTAGCGAAGCCAAGAAACGTCCTTCAGACCCTGTCCTGCTGGAGTTGGCCAACGAGGTGGACCTGTCACCATCTCTTCTGGCTCGTCTGCTGGTGGAGCGCTTCCTAGAGGAGCAGCAGGGCTCAGTGTCCTCCAAGCAAGTTTTGAACAGTATGTTAAAGGAACCATCTTTAATTCCAGACATGCAATTGGCCAAACATGTGGAACAGTGCACAATAAATGACTGCTGTTATGGACCGCTGGTAGACTGCATCAAACATGCTATTGGTCAGGAGCATGAGGAGATCCTGCGGGAGAAACTCAGAGAGAGGAACTTGTCTTTTCTAGATGAGAATCATCTACGGGCCAAGGGTTATGACAAGACCCCTGACATTATTCTCGAGGTCCCAATCGCTGTTGAAGGCCACATTGTTCACTGGATTGAAAGCAAGGCTTCGTTCGGGGATGAGCAGAGTCATCGCACGTACCTGAACGAGCAGTTCTGGAGTTACTGGAACAGGTTTGGTCCTGGGCTAGTCATCTACTGGTACGGCTTCATCTCCGAGTTGGACTGCCAGCGGGACAGAGGGATTCTGCTCAAAGACTGCTTCCCTACAGACATTGTGACTCTGTGCCATGGGTCAAGCCATTGCTGATGCTAGAGCTGAGGGTGATACCGATGCAGAGGAAGGTGGGGAGGAGCGTTTGTCGGTGGAGACGTGAATCCGGAAGAAATTTAGGTTTCCCGTTGCGCAAAAGCTACTGGCAAACATCTGCCCTGAACTCCAGTTGAACTCACAGGGATCAGGGTAAGGACAGTACCTCTGTAAAATCACGCCAGGAGGGCTGGGCTGGACTCTCCTTGGAATGGCTTGGGGTTGGCCCCTGGTCTGGACCCTACAGCCCTGCAGGAATCCCCCTGAAAAAGCAGGAGAATAGAGGGCAGGTAGCTCTTCTTATCATGGCTGTCCCTCTCCCTCCTCACTCTCTTGTGACCCTTTCACTCTCTCCTGAGACCAGTAGGGAGGTCATCACTGTTATCAGCTCTCCTGCTTTCCCCTTTCTCTGTATCTGATAGGGTGTGGCCTCTTTGGaacctttttctttccttttctattTTTGATTCGGGATGTTAAATGTCTAAAAAGAGGCTGATTAATTGAGAAAGGTCTTTTAGCTCacatccatgatttttttttttttctcaaacacaaattcaataaaattaaattaaaagttaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112941 lncRNA upstream 160017 27268958 ~ 27269231 (+) True G83826
TU112939 lncRNA upstream 184980 27243756 ~ 27244268 (+) True G83824
TU112919 lncRNA upstream 288851 27133975 ~ 27140397 (+) True G83805
TU112907 lncRNA upstream 328675 27087200 ~ 27100573 (+) True G83795
TU112893 lncRNA upstream 347061 27079360 ~ 27082187 (+) True LOC111193233
TU113070 lncRNA downstream 97946 27604237 ~ 27612455 (+) False LOC107197843
XR_002650373.1 lncRNA downstream 102951 27609242 ~ 27615567 (+) False LOC107197843
XR_001518812.2 lncRNA downstream 105252 27611543 ~ 27615567 (+) True LOC107197843
TU113068 lncRNA downstream 106265 27612556 ~ 27615550 (+) False LOC107197843
TU113109 lncRNA downstream 197963 27704254 ~ 27704881 (+) True G83972
XM_022673069.1 mRNA upstream 532180 26795808 ~ 26897068 (+) True stxbp6
XM_022672485.1 mRNA upstream 651760 26727918 ~ 26777488 (+) True fermt2
XM_007257406.3 mRNA upstream 713233 26693418 ~ 26716015 (+) True LOC103023862
XM_007257407.3 mRNA upstream 713233 26693423 ~ 26716015 (+) False LOC103023862
NM_001291252.1 mRNA upstream 815484 26604718 ~ 26613764 (+) True bmp4
XM_007257384.3 mRNA downstream 264502 27770793 ~ 27813908 (+) True spred1
XM_022673084.1 mRNA downstream 309541 27815832 ~ 27820689 (+) True fam98b
XM_007257383.3 mRNA downstream 317965 27824256 ~ 27829462 (+) False LOC103044189
XM_022673086.1 mRNA downstream 342386 27848677 ~ 27855382 (+) True LOC103043868
XM_007257377.2 mRNA downstream 349450 27855741 ~ 27858741 (+) True LOC103042318
TU112857 other upstream 681497 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 681497 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 921123 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1029981 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 1180152 26235498 ~ 26249096 (+) False G83602
TU113122 other downstream 309514 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 1463973 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1463988 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1493211 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1497803 29004094 ~ 29025114 (+) False LOC103045392

Expression Profile