RNA id: XM_015607898.2


Basic Information

Item Value
RNA id XM_015607898.2
length 3123
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC103026145
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26474775 ~ 26484622 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGCGTGATGCTAGCCGCCATTTTGCATCCTCCTAGCACAAGTGTACGAGTGGAGCCGGACCAACGGCGAGGGATTCGGTCACTTTTTTCCGTTTTTCCCCTCTTCACGTTCCCCCCCGGAGCCATCCGTTCATAGCACGTTCAAGTTGTTAACCGGCAGCAGGTCTGGTCTCACATAGTGATCTTGATGATCGGGCAATTGAAGCTCTAAAGGAATTCAACGAAGAAGGTGCTCTGCAAGTCCTCCTGCAATTTAAAGACAGTGACCTTTCACATGTTCAGaacaaaagtGCCTTTCTCTGTGGAGTTATGAAGACGTACAGGCAGAGGGAGAAGCAGGGGACCAAAGTGTCAGATTCTAATAAAGGACCAGAtgaggcaaaaatcaaaGCTTTGCTTGAGAGAACTGGATACACCCTTGATGTGACAACAGGCCAGAGGAAGTATGGTGGTCCCCCTCCAGAATCAACCCACTCAGGTGCACAACCCTCCGTTGGCACAGAGATTTTTGTGGGAAAAATCCCTAGAGATCTCTTTGAGGATGAGCTAGTCCCGCTCTTTGAAAAAGCAGGGCCTATATGGGACTTGCGTCTAATGATGGACCCACTCAGTGGCCTGAACAGGGGTTATGCCTTTGTTACTTTTTGCACTAAAGAGGCTGCTCAGGAGGCAGTTAAGTTGTGTAACAACAATGAGATACGCCCTGGCAAACACATTGGCGTGTGCATCTCTGTCGCCAATAATAGGCTGTTTGTGGGATCCATCCCCAAGAGCAAAACCAAGGAGCAGATAGTTGATGAATTTGCCAAAGTTACAGAGGGGCTGAATGATGTAATTTTATACCATCAGCCTGATGACAAGAAGAAAAATAGAGGTTTCTGCTTTTTGGAGTATGAAGATCACAAAACAGCAGCACAAGCACGGCGTAGGTTGATGAGTGGCAAGGTGAAGGTGTGGGGAAATGTGGTGACTGTGGAGTGGGCCGACCCCATTGAGGACCCTGACCCAGAGGTTATGGCCAAGGTTAAAGTACTTTTTGTAAGAAACCTTGCAAGCACTGTATCAGAAGAGCTCTTAGAAAAAACATTCAGCCAGTTTGGCAAGCTGGAAAGGGTCAAGAAGCTTAAAGATTATGCCTTTATTCACTTTGAGGAGAGAGATGGTGCTGTTAAGGCCTTAGCTGAAATGAATGGTAAAGATTTGGAAGGAGAACAAATCGAAATCGTCTTTGCCAAACCCCCTGATCAGAAGAGGAAGGAGCGGAAAGCTCAGAGACAAGCAGCCAAGACCCAGATGCCTTTCTGGGACTTCCCCAGgtatgatgattattattactatgGCCCAccacacatgcctcctccggcAAGagcaagaggaagaggaggcagGGGAGGCTTTTCATATCCCCACGACTACTACGGCTACGAGAATTACTATGATTACTACGGCTACGACTATCACAACTACAGAGGAGGCTATGAAGATCCATACTATGGATATGAAGACTTTCAAGCCAGAGGAAGAGGTGGTCGTGGAAACCGTGGTTCTGCACTTTCCAGGGGACGTGGAGCAGCCACTGCCAGAGGACGAGCCAGTTTCTCCCAGCGCGGAGCCCCAGGATCCAGCAGAGGTGCACGTGGGTCCAGAGGAGGAACTCAGCAGAGAGGCCGTGTGGCACCTTGTGGAAGAAATGGACCAAAGcAGGGAAAGGGGGTCGAGGCTGGTCCTGACCAGTTACAGTGAAGACTGACTTGCTACACGGGGTTACACCATAAGCTGCCAATGGATATGATGGTAAGGTCAAGGCAATGGTCCAATGATTTTCCAGCCTTACAGAAGCATATCTCCCCTACTGCCACCCCGAACCCCCCTCACCACAATGGAAATTCTGTACGTTGGACTTTctgtattcattaaaaaaagtcttGCATTCAAAATGTCATGCTACTCATTGTAATGTTCCCCAAAATACAAAATGCACCAGTTCAAATCATTTGTGACGTTCAGACTTCCTAAAGGAtactaaaattttttttttttttttgcactttttttttaagtttgagtttGAAGTGGCTCAAATGAGCTTGATgctaatgtatatttttgtgctaattgtaattttattgtCAGAATATCCATGTTATCTAAATTTTTGATTTGGATGAAGAGGACATGGCATCTGCAGGTTTTTGGTGTAACCGCCTTGCATGGATAAGTCAGGCATTCCAGGAAAGTGGTTCTTTTTAAGAACTTGTCTTTAAAGGGTTGGTTAACTACCTCAGTACAGAGGATTGAACTACCCTGCCTGTACTGTAAATAGGGAAACTTATATTGATGAAAGCAGGGCttgttttttatgaaatatgCATTAGAGCAGCTGCTcaaaaaatgtacttaatgTAATAGTCATTTTGCTGCTGCTCTGACACTGCGAACAGTCAAACTGGGCATGCAAAATAATCTCATATGATGAGCCTAAACAAGCCCTgcttttatcttattttgaactgaattagcTGCCTTGCTTCTTCAGATTATGTAGTTACTGGTTGTATGATTGTATGATAGTTTTGGAATAAAATGTTACTTTTGTAAAGGCTTGAACATCACAAAGGCATCAACTGCTTTTGCTAAGCCCTGCAGTGTCCCTTTTTTCTTTACGTGGAGAAAGCAGTTTTGGAAGCTTGCTCTGTAAAGACCACAGAATCATGTCCTGTACCAccgtaaacttttttttgttgttttaaaggtttgttttaatcatgaatcATAAACTTGAATGATCATGTTTCAGCTCTGAGCCGGCCACGTGTCAgcagaggcagaaaaaaaaagtaggctGACTGTGCAGCCTCTGTGAATGGGCCTGTGGCTGTGCTCACTGGGAAGGGACAGGATCATTCAGTGGAAAAAGGGATGCTGCAGATTTGGTTTATATTCCATATATAGCAAACAGCTGACTGAACCATTCAACTGAACCGGTTTTGTACGCAGTTAACTCCCTCTCGATGAAGCTGTATCATTACAACCTTTTGACAAGATGTTAGCAATTTTAAACTATTGTTGGTGGCCAACAACGTTTTTTGCAttcctgcaaataaattgttttatactgtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112730 lncRNA upstream 51715 26422514 ~ 26423061 (+) True G83672
TU112718 lncRNA upstream 134504 26339831 ~ 26340272 (+) True G83663
TU112716 lncRNA upstream 135077 26339182 ~ 26339699 (+) True G83661
TU112701 lncRNA upstream 147490 26326032 ~ 26327286 (+) False LOC103031022
TU112700 lncRNA upstream 163828 26310709 ~ 26310948 (+) True G83649
XR_002650367.1 lncRNA downstream 22717 26507339 ~ 26509319 (+) True LOC111193231
XR_002650364.1 lncRNA downstream 23989 26508611 ~ 26565844 (+) False LOC111193231
XR_002650366.1 lncRNA downstream 23989 26508611 ~ 26513522 (+) False LOC111193231
XR_002650365.1 lncRNA downstream 23989 26508611 ~ 26511099 (+) False LOC111193231
TU112852 lncRNA downstream 234356 26718978 ~ 26719365 (+) True G83760
XM_015607914.2 mRNA upstream 40584 26425098 ~ 26434192 (+) True LOC103029223
XM_007257426.3 mRNA upstream 54466 26401087 ~ 26420310 (+) True ptpn21
XM_007257427.3 mRNA upstream 54466 26401087 ~ 26420310 (+) False ptpn21
XM_007257430.3 mRNA upstream 75509 26392890 ~ 26399267 (+) False spata7
XM_022673062.1 mRNA downstream 3411 26488033 ~ 26506512 (+) True snx14
XM_022673064.1 mRNA downstream 3412 26488034 ~ 26506512 (+) False snx14
XM_022673063.1 mRNA downstream 3412 26488034 ~ 26506512 (+) False snx14
XM_022673065.1 mRNA downstream 3413 26488035 ~ 26506512 (+) False snx14
NM_001291252.1 mRNA downstream 120096 26604718 ~ 26613764 (+) True bmp4
XR_002650363.1 other upstream 75509 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 225680 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 502533 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1440655 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1539226 24935073 ~ 24935550 (+) False LOC111193228
trnay-gua_9 other downstream 23418 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 243201 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 243286 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1331183 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 2485642 28970264 ~ 28970827 (+) True LOC107197841

Expression Profile