RNA id: XM_022673068.1


Basic Information

Item Value
RNA id XM_022673068.1
length 3338
RNA type mRNA
GC content 0.39
exon number 11
gene id spata7
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26392890 ~ 26399267 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACTCCTAGCAACCATCATGGCGCCGGGGAAGCAGTTAGCGGTTCGCTGAGGGGGAGGAGGGAGTGATTGgtgttttattagtgtttaattcagagCATTCTATCATGGCTCGACTGGAAGTCTAACAAATCAGCACATTGTTAAAGACCACATGCTGTCCCATTACAAAAAGATATACTCAGCAAAAGctgTAGTGGATTGTGCAGTACCTACAAGTATGTGtcgtaatgtaaaatACCTAGATCAAAAGCGGCGTGAGCAGCTAAAACAGGATGGATCAGAACGGGCCCAGTCAGCAAGGTCCTTTTCACAGAGGAGCATCCGGTTGAATACTGTGACCCCATGCTCATCCAAACATACAAGACCTTCGGTTCGAGGTGCAGAGGGTGCCCATTTCGACCAAGGGGACTCTGTCTTATCCTCACCTAGATTCAATACCTCATTTCATTTCAAGCAAATTGCATATGCATCCAAAATGACCACAAACTCTCAGAACTATCGACCTGCATCGGAGTTAAGTTACAGGAGCCCAAATTCTCATTGGCACCACTTCACACCTTCATGTACCACATCAACTAGTCAGAAGAAGTTTAAAAGCTTCCAAGATCCTACACAGAAAACCTACAGTGGTGATGTAATGCACAAACATGCTCACTACTTTACTGAGGAAAAGCCATTTACTCCGAGAACACTGAAATCAGATTGCAAATCCACACTCTCTACCTATCGGTATTACACACCTGGCAGAGGAAAAGAAGCAGAGGCGAAAAGCACATCTAAATTTCGTCGACAAGAGACTTACCATGGAAGCACACACAACAAGCAGTGGTCTTCAGCAGGACAGGAGTCACCCCAAccaTACAGCCCTGAACATGAATGGTCTGATGAAGAGTCAAATGTGTTTGGCAATACTTACAGCACAGCAAATAAGTATAGAGACGGTGGATTTCCTGTTTCCTCTTCAAGGGTGTCACCAGAGGGAATGAAGTCCCCAGTAATGAAAAAAGTGACAGCAGTAGAACAAGAAGTAAAGTATCTGGAGTTTATTACTGATGTAACAGATGATATTTTGGCACGAGGGATCTACTCTGACAGGGTTCTGGAGCTTGTTTTTGAACGCCATATTGATATGAATAGACACCGATTAGACAAGGACAAAATGCGCCACCTTCTGGATGATTTACGAAATGATCTACAACGTCCCATCGCTGCTCCTGTAATGGTACTTGAAAAGGAAGACAAGGACAGTTTCCTGTTGCCTAGACACAAGTATTCAGGCCTGGAGCAAGAGCTGACATTCATGACTAAAGAAAATGATTCTAGGCCTCTATCTTGCACAGTCTTTGATAAGGACACAGAGATTAATGTTGTATCTCCTTCATTACATTTCACACCAGTAAATGGCAAAGTCTCTGAGAGTGCCACACCTTACGGACAACAAGATGAAGAGGGTCATACAGATCTGCAGTTTGATTACAGGAAAAGCAATGCAGTATCCCCCAGTTTGGAAAACCAGCAAATGAACAAAGAAGAGGAACATCAAAACGATGAGCCGACAGCAGATGATGAGCTTGTGAAAGAGTTTGACGAACTTGGTAGGAACATGACCGACTCCCTAATTGTATCTGAGACACATGGCTCAAAAGTGAACATTGAACAGGACTCAGAGAAACTTAGTGATGATGAATTTTGAACTCTGTATTGGCTTTTAGTTGTCTTTTCAAAGCCAAGGAGTTGTAATGAAGCCATATTTGAGCATTTCAGAGTTTTCTACATATTTTTATGCGATACTGGATtctaattttaaagaaaagtagAAAATTCAAGGTGACAACACATGATGGGCTGGTGAAAGAGCCTGTTAAATTAGTTAACCAACAGGGGAGATAATTATTTAGCTCAtcttattttgtaatttgttttcacTAAATATTTGATAAATATTCGGTAAGGTTGATTTTATTCGGTTTTCCAAACTGTTACACATCTCTTTTATTATTGGACAAAAAAAGAAGGTTGTAAAATGTTCTAGTTCTGTTCTttactactttttttaaaacaatttgtgCTTAACGAGTCTTTATGGTTCAACCAATATACTCTAGACCCCTAGAGTGTCATATCTGATATCCTACACTGGTAGCCATGACCAAGTACAGAGTCAAATCCCAAAACAAGTGACTGCACAAATATTACCGGCTAAAAGTgatgtattaatataaaaaatttagATTTGTCACTGAAATATAGGAAATGGTATTTCTTACACTACTTGAAGTAAGGCCATTGATTCAATGGCATTTTGTTGTCAGTACAAGACGAACCTATTTGTTGTTCTATGGAGATCATTAAGCAGCATTATGTAATAATTGATATTTCCTGCTGCTGGGCTCCTCCTGTGATCGGGATGAGGAATTTGCACTTTAAACACCACTGAAGGACAatctttacacatgcatttctggtcAAGCTGAGAGATTTGTTGAAAGTTAAGGAGGTCTGGACTCAGGTGTTAAAGGATTATTACAGGATTTTGCACAAATATGGCTCAGGTTATGCAGTGTTACAGAGTTTTCCCTCAAGTTGCCTGGGCCAGAGTTACTTAGTAGAGTTAGCAGTGTGCTGAGCCTGGAGTGGCAAAACACAGAGGTGCTATTCTCTCCATTACAATCATTGGAGCATCAAGATGACCTTGAGGctgttattttaaggttaaacatattttatatgtttggaTCATTTAATTTGACCTGTGCATTTTTTACTGTGCTTAAAAATGGAAACAcatgcttattttttattttgttttatatgataTTATGTGGACGGCAGTGATGTACAGCATGTCCAAAAATGATGCTCATATCTCAGACTAAACACACTGCTGTAATATGTTGCACGGTGGTCATGGCCTCCACACAGGTTTTGTTTAGTTGGAGCAGAATCAGCCATCggctctttgtgtgtttttaacggTAAATTGACTGATTGAATCACATTTGTTGTAGCATCTACATAATGTTTATCATCAAAAGTTTTCACTCTTCTAgtagaaaaaagtttttttttctgaacttcaTTTCTTTGAACTGCAAAAACatagtttgttttttagttttgtgaaTTGTTTTGATTAAGCAATAATGTATAAGGCAGGATATTTCTTTTAGCTAGATAACTTAAGGCCaaaggtctctctctcttccccttgGGGACAACTAAATAGGTTTAAACACATTGCACttcaatattttttgcattgtgttcgaagtagggctgtgccatattgtattgtatgcaataacaCCAGCCAATAAAAATTAATTCTGATTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112718 lncRNA upstream 52618 26339831 ~ 26340272 (+) True G83663
TU112716 lncRNA upstream 53191 26339182 ~ 26339699 (+) True G83661
TU112701 lncRNA upstream 65604 26326032 ~ 26327286 (+) False LOC103031022
TU112700 lncRNA upstream 81942 26310709 ~ 26310948 (+) True G83649
TU112689 lncRNA upstream 87547 26275001 ~ 26305343 (+) False c9h14orf132
TU112730 lncRNA downstream 23247 26422514 ~ 26423061 (+) True G83672
XR_002650367.1 lncRNA downstream 108072 26507339 ~ 26509319 (+) True LOC111193231
XR_002650364.1 lncRNA downstream 109344 26508611 ~ 26565844 (+) False LOC111193231
XR_002650366.1 lncRNA downstream 109344 26508611 ~ 26513522 (+) False LOC111193231
XR_002650365.1 lncRNA downstream 109344 26508611 ~ 26511099 (+) False LOC111193231
XM_007257433.3 mRNA upstream 32144 26357779 ~ 26360746 (+) True LOC103030701
XM_007257461.3 mRNA upstream 40455 26351131 ~ 26352435 (+) True LOC103041211
XM_015607885.2 mRNA upstream 57067 26331927 ~ 26335823 (+) True LOC103041516
XM_007257462.2 mRNA upstream 61934 26328801 ~ 26330956 (+) True LOC103041814
XM_007257434.2 mRNA upstream 65552 26321185 ~ 26327338 (+) True LOC103031022
XM_007257426.3 mRNA downstream 1820 26401087 ~ 26420310 (+) True ptpn21
XM_007257427.3 mRNA downstream 1820 26401087 ~ 26420310 (+) False ptpn21
XM_015607914.2 mRNA downstream 25831 26425098 ~ 26434192 (+) True LOC103029223
XM_015607897.2 mRNA downstream 75508 26474775 ~ 26484622 (+) False LOC103026145
XM_007257416.3 mRNA downstream 75509 26474776 ~ 26484622 (+) True LOC103026145
TU112640 other upstream 143794 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 420647 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1358769 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1457340 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1565134 24827674 ~ 24827756 (+) True trnal-cag_10
trnay-gua_9 other downstream 108773 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 328556 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 328641 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1416538 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 2570997 28970264 ~ 28970827 (+) True LOC107197841

Expression Profile