RNA id: XM_007257433.3


Basic Information

Item Value
RNA id XM_007257433.3
length 1470
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC103030701
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26357779 ~ 26360746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAtatggaattagttttaactgGTTATTTATAAGTGAGAACAGATGCAGGGCTGGATATTATAAGAATATTATAAACTGCCATTTTATGTTAGTGTTATCCTCTGATGacccaaaaccaaaaaaatgtcaTGGCTACAAAGTCATTCTCAATGAACATCATCGTATTCCCCAACCAATTACTACCATTTCTCATTCTGAATGGCAGCCAGAAATGTGTTGCACTGctgaacaaaaatatttcaCCCACTGGCGTGTTAAACACACAGTAGTTCTTCTTCCTCAAACCCTTTTTGGGTTAAGGGCATGCTGAAACCAGCAAAAGACAGGAAGTAAAACTCACTCTGAGACTTTACTCTGAGAAGACGACCTCAAGAACAGACGACAGTCACCATGCTGACATACTTTAGGATATTCTTTaacttcttttttacttttgttcttttttctgatTAACATTCGGAGTCAGTGTAAGGCCTGGCTGTACTGAGGctGCAAGAACATGAATTCTACACCTGGCAACTCCTCTGAATCGGAATGCTATCCCGAGATTCCAATGAAGTACTTCTTCTTCACTCTACATTTGGTCGTCATTGTGATTGGGATTCCTTCAAATGCGTTCTCTCTGTATGTTTCCTGTCAGCACATCAAGCAGAAAAACGAGCTGGGAATCTATCTGTTTAACCTCGCTCTGTCCGATGTCTTCTTCATCGCTGGTCTGCCTGTGTGGATGGACTTTGTCTACCATGATTTCTGGCGCCATGGCAGTACGCTGTGCACCATCTGTGTCTTCTTCCTCTACACCAACTACTACACTAGTGCTGTGCTACTGAGTTGCATTGCTGTGGACCGCTACCTTGCAGTGGTCCACCCGCTCAGCCTTCCCCACCTACGAACAATCAGCACTGCAAGTATAGTCTGTGCTGTAGTGTGGATTTTAGCTATCATCTTTAATGCCATCACCATTTCTTCAAACGACATCTATGAAGAAGAATATCAAATCTGCCTGGAGATTTTACCACTGAGCTACCATCAAAGGAGGATAAATGTAATCCGTTTCATTGTGGGTTTCCTCCTACCAGCTGTGGTGGTAGTGTTTTGTTACTGGAGGATCTGCGCGGAGGTTTATAAGAACCAGGCCATGAGGCTTCCTGATCGCATGCATGTCTTCAAGCTCCTTAGCAGCTTGCTACTGACCATCTGCATCTGCTTCGGCCCTATTCACATCACCTTGTTGCTGAGGTCCATTTATGAGGATTGTCCTCTTCTCACCTGGCTCTATGTCCTCTATAAAATAAGCGTGGCTCTCTCCACTCTGAACTGCCTGGCTGATCCCCTTTTGTACTGCTTCATCACCAGGACAGCACGCTCAAGTGTCACCAAGGCCATTCTGACCTTTCACAAATAAGAGGAGTGTAATGTTCCACACCTGACAACTCCTCTGACAAATGCTTTCCTGAGATCCCAATGA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112718 lncRNA upstream 17507 26339831 ~ 26340272 (+) True G83663
TU112716 lncRNA upstream 18080 26339182 ~ 26339699 (+) True G83661
TU112701 lncRNA upstream 30493 26326032 ~ 26327286 (+) False LOC103031022
TU112700 lncRNA upstream 46831 26310709 ~ 26310948 (+) True G83649
TU112689 lncRNA upstream 52436 26275001 ~ 26305343 (+) False c9h14orf132
TU112730 lncRNA downstream 61768 26422514 ~ 26423061 (+) True G83672
XR_002650367.1 lncRNA downstream 146593 26507339 ~ 26509319 (+) True LOC111193231
XR_002650364.1 lncRNA downstream 147865 26508611 ~ 26565844 (+) False LOC111193231
XR_002650366.1 lncRNA downstream 147865 26508611 ~ 26513522 (+) False LOC111193231
XR_002650365.1 lncRNA downstream 147865 26508611 ~ 26511099 (+) False LOC111193231
XM_007257461.3 mRNA upstream 5344 26351131 ~ 26352435 (+) True LOC103041211
XM_015607885.2 mRNA upstream 21956 26331927 ~ 26335823 (+) True LOC103041516
XM_007257462.2 mRNA upstream 26823 26328801 ~ 26330956 (+) True LOC103041814
XM_007257434.2 mRNA upstream 30441 26321185 ~ 26327338 (+) True LOC103031022
XM_015607884.2 mRNA upstream 52396 26275020 ~ 26305383 (+) True c9h14orf132
XM_015607915.2 mRNA downstream 32144 26392890 ~ 26399267 (+) True spata7
XM_007257430.3 mRNA downstream 32144 26392890 ~ 26399267 (+) False spata7
XM_022673068.1 mRNA downstream 32144 26392890 ~ 26399267 (+) False spata7
XM_007257426.3 mRNA downstream 40341 26401087 ~ 26420310 (+) True ptpn21
XM_007257427.3 mRNA downstream 40341 26401087 ~ 26420310 (+) False ptpn21
TU112640 other upstream 108683 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 385536 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1323658 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1422229 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1530023 24827674 ~ 24827756 (+) True trnal-cag_10
XR_002650363.1 other downstream 32144 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 147294 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 367077 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 367162 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1455059 27815805 ~ 27819547 (+) False fam98b

Expression Profile