RNA id: XM_022673054.1


Basic Information

Item Value
RNA id XM_022673054.1
length 4439
RNA type mRNA
GC content 0.45
exon number 38
gene id LOC103033015
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25919557 ~ 25975283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacgcgcgctcacacacactccagcaccaCTGTCCCACATGTACACTTTCCCTCCGAGGCAGCGGCGCAGCGGGATAAATGGCGAAAGCATATGAGTTTAACTGGCAGCGGGCAGTGCCGGACTGTCTGCAGGAGGGAGCATATTTTGATAGATTCGATGAGGACCCCTTTGCCTTTGAATCGAACTGCTTTTTCCGAGTGGATGCCTTTGGCTTCTTCATCACGTGGAAGAGTGAAGGGAAGGAAGGTCAGGTTCTGGAGTGCTCTTTGATCAACAGCATACGAAGCACCAGCGTGCCTAAGGATCCGAAGATTCTTTCAGCTCTGGAGGCCACAGGGAAGACTGAGAGTGACTTAGAGGGCAGGATCATCTGCATATGCAGCGGCGCTGACCTAGTCAACCTCAGCTTCATGTATATTGTGGCCCAAGACATTAGCATTGCAAAGCAATGGACTGACAGCTTGCGGTCATTGATTCACAACAGCCGGGCAAACAATGTGTGCCCAATGACCTGTCTAAGGAAGCATTGGATGAGGCTGTCTTTTTTGACCAACGTGAATGGAAAAATCCCAGTGAGAAGCATTACAAGAACATTTGCTTCAGGAAAAACAGAGAAGGTGATATTCCAAGCATTAAAAGATCTTGGTCTTCCCAGTGGAAAGaATGATGAATTAGAGCCTGATGCTTTTACCTTTGAGAagttttactctctctctcagaagaTTTGCCCCAGAACTGACATTGAGGTGTTGTTCAAAAAACTCTGTGGAGAAAAAAGTGATTTCTTGAACACGGACCAATTAGTCAGCTTTCTGAACGAAAACCAGCGGGACCCCCGCCTTAATGAGATTCTTTTCCCATTTTATGACTCCAAACGCGCCAGGCAAATCATAGAAAGCTACGAGACTGATGAGAAGCTTCAAAAGAAAGGGCTGATGTCGTGTGATGGATTTAGCCGGTACCTGATGTCTGATGAGAACGCTCCAGTGTTTTTAGACCGGCTGGAGCTCTATCAGGAGATGGACCAGCCGCTCGCCCATTACTTTATCAGCTCCTCTCACAACACCTACCTGACGGGCAGGCAGTTCGGAGGGAGGTCCTCAGTGGAGATGTACCGGCAGGTCCTGCTATCTGGCTGCAGGTGTGTGGAGCTGGACTGCTGGGATGGAAAAGGAGAGGATCAAGAGCCTATTATCACTCATGGCAAGGCCATGTGCACAGATGTGCTTTTCAAGGATGTCATTCAGGCCATTGAAGAAACTGCATTTGTCTCTTCTGAGTTTCCTGTGATCCTGTCCTTCGAGAACCACTGCTCGAGACATCAACAGTATAAGCTGGCCAGATACTGTGAGGACATTTTTGGAGATACGCTCCTCAGACAGCCTTTAGATGATTTCCCTTTGGAGCCTGGACAACCTCTGCCTTCACCAAATGACCTTAAAAGAAAAATCCTCATTAAGAACAGAAGATTAAAACCTGAAGTGGAAAAAAAGCAACTGGAGCACTTCCGGAAGCATATGGAAGCTGGGGATGTGAACATGTCAACTAACATGTCAGAAGATGAAAATGAGGAGGATGCTGGCTGTGcaGACCTTGTGGATGAGGCTCACCCAGAAAGGATATGTGGTCGTCTCGTCATCAGCCAGACGAATAGTAGTGAAGGAGATGTCCCTGCAGCTGACAAGGGAAACAAAGATGAAGTTGCAGGATTAGAAGTACTAGCACAAACACCCCTGGAGGCCGCATGTCAGGAAAATGGAAAGAAGGCTTGTGAGCCGGGCGTGGCTGATGAGCAAGCTTTGATTCAGTCGTACACATACGTCGCAGCCACCACTAATATCCACCCATACCTGTCCAATATAATCAACTATGCCCAGGCTGTGAAGTTCCTAGGTTTCGAAGAGGCTGAAGAGACGAACATTCACCACAACATGTCTTCCTTTAATGAGTCCGTGGGCTTGGGGTACTTGAGGACCAATGCCATTGAATTCGTCAACTACAACAAGCGGCAGATGAGTCGGATCTACCCCAAAGGAGGCCGAGTGGACTCCAGTAATTATATGCCTCAGATCTTCTGGAATGCCGGCTGCCAGATGGTTTCTCTGAACTTTCAAACCCCAGATCTGGCAATGCAGCTGAACCAGGGAAAGTTTGAGTACAATGGATCATGTGGGTACTTACTGAAGCCAGATTTCATGCGTCGTCCAGACCGCATGTTTGATCCTTTTTCAGAGACTCCTGTGGACGGAGTAATTGCAGCCACTTGCAGCGTCCAGGTGATTTCAGGCCAGTTTTTGTCTGACAAGAAGATTGGCACGTATGTGGAGGTGGATATGTATGGGCTCCCCACAGATACCATTAGGAAAGAGTTCAGGACCAGGATGGTGATGAATAATGGACTAAACCCTGTGTACAATGAGGAACCCTTTGTGTTTAGAAAGGTAATCCTACCGGACCTTGCAGTGCTCAGAATAGCCGTGTATGATGACAACAATAAGCTGATTGGCCAAAGGATTCTCCCACTGGACGGTCTGCAGGCTGGCTACAGACACATCTCCCTACGAAACGAGGGCAACAAGCCGCTCTCCTTGCCTACCGTCTTCTGCAACATCGTCCTCAAAACATATGTACCCGACGGATTTGGAGcCATTGTGGATGCTCTGTCTGATCCCAAAAAGTTCTTATCCATCTGTGAGAAGAGAACAGACCAAATGAGAGCCATGGGCATTGAGACGTGGGAGATAGCTGATGTGCCGAATGACAGTTGCAAGCGGAGTAAGAAGGGAAAAGCGAACCAGGTGAAGTCACTGTCACCTCAGAGGAGTCTGGAGACACGCAGCACGTCATCGGGACAGAATGCCAGCACTTTCCCTAAAAAGGatACTGACACTACCATGCCTCAAGTCACAGTTGAAGACCTGAAACAGATGAAGGAATATCTAAAGCTGGCTAAGAAGCAGGTGAAGGAGCTTAATGCACTGAAGAAGAAGCAGACGAAGGCACACACTGCATTGCAGAGGTCTCATTGCACTCAAATGGACAAGGTTGTTGTGCAGCACGAAAAAGAAAAGCGTGTGCTGGAAAAGcagctggaaaaaaacaagaagaaagtCAGTGAAAGTAACTGCTGTGAAATGGGAAGAGAAATCGAAATGAAGATGAAGACTATAACCGCAGACCACAAAACAAAGGTTAAAGATGCGGCTGCTGCCCATGCCCGCGAGTGGGCTGAAATGATGAAGGCCCACAGTGCTGAGATCCAGGAGCTGAGAGATCAGCATGTTCTGCAGCAGTGCGAGCAGCTCCGTAAGCTCATGCTAATGACACAGGAACAGCAGACGCAGCAGCTTACGCACCTTCACGAGCGACAGTGTAAAGAGATGAGGGCCAACCAAGCAAAGTCTTCAATGGCGAACGGCAGAGCTATCAGCCAGGACAAAAGCATCAAAAACAAGGCAGAACGAGAACGGAGAGTTCGAGAACTGAACAGCAACAACACCAGAAAATTTCtcacagaaagaaagaggCTTGCCATGGGCCAGTCTAAAGAGATTGAACAGCTCCAGACAGCCCAGCATGAACAACTGGAGAAGCTGGATAAATATATCGCAGAGctaTTGAAATCGCACCACTCAAAATCACAGCACCAAGgACAGTGTAATACAGCACATGAAGGGGATGCAGGACTGATCACAAGCCACAGTGATGCCCTGACCTGCTTGACCACATGAGATGGCACACTTGAACACTTAAACACTTAAGTAGTGCACACAGCTACAGAAATGTTAAatttatgtgtgtattttacagtatatacgTTTTAAATTCTGTTACTTTAGTCCTAAAGTAAGTATAGCCTGATGGTAGGCATTGCttttataaaaccttttttaatgtAAGTGTTTtcataatatacttttttatatgaaatattttatattgttcatCACTGTATTACAGTTCGACCTATTCACTGTACACCACAATAAGTTTTATGTTGTCATGTAATAAGGTTGTAAACACTGTATTTTCCACACTCTCAGGGtgaaacttttgttgaatatgACGCCTATGAAACATTCACAAACATTCGGTTGTTGAGTGAGAGCACTTGTTTGAAGATAATTTAATTATAACTTTTCCAttagaattaaaaatgtattctggCATAAAATGAAACATCATTAATATGTAAATAGTTTGGGGAACACTGATGCTTGCATTCCAGACAGAAAGACagttataaaattaaataaataaaaagacaaattagTACATAAAAATGCTTAGCAATCAGTCCGTGTTGCAGAAGAGTGATTGTTGTGCTGACAACCTATGGTTGTAGGAGTAAATGATCCTGAGCAAAATGTATTATCAATTGCATgtgtatttaattaaaacatccCAAGAGTTCACAAGAGTTTAACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112538 lncRNA upstream 117113 25798460 ~ 25802452 (+) True G83522
TU112455 lncRNA upstream 382295 25517590 ~ 25537270 (+) True G83456
TU112448 lncRNA upstream 423905 25495158 ~ 25495660 (+) True G83449
TU112445 lncRNA upstream 455312 25463900 ~ 25464253 (+) True G83446
TU112439 lncRNA upstream 540274 25378571 ~ 25379291 (+) True G83441
XR_002650361.1 lncRNA downstream 9398 25984681 ~ 25993012 (+) True LOC111193229
XR_002650362.1 lncRNA downstream 9398 25984681 ~ 25993012 (+) False LOC111193229
TU112638 lncRNA downstream 259633 26234916 ~ 26235175 (+) True G83601
TU112639 lncRNA downstream 260215 26235498 ~ 26253602 (+) True G83602
TU112689 lncRNA downstream 299718 26275001 ~ 26305343 (+) False c9h14orf132
XM_007257442.3 mRNA upstream 2721 25835147 ~ 25916844 (+) True LOC103033987
XM_007257443.3 mRNA upstream 17315 25835140 ~ 25902250 (+) False LOC103033987
XM_007252060.3 mRNA upstream 194656 25718474 ~ 25724909 (+) True LOC103021856
XM_007252046.2 mRNA upstream 202119 25715058 ~ 25717446 (+) True gdf3
XM_022673052.1 mRNA upstream 228671 25684805 ~ 25690894 (+) True crls1
XM_015607884.2 mRNA downstream 299737 26275020 ~ 26305383 (+) True c9h14orf132
XM_007257434.2 mRNA downstream 345902 26321185 ~ 26327338 (+) True LOC103031022
XM_007257462.2 mRNA downstream 353518 26328801 ~ 26330956 (+) True LOC103041814
XM_015607885.2 mRNA downstream 356644 26331927 ~ 26335823 (+) True LOC103041516
XM_007257461.3 mRNA downstream 375848 26351131 ~ 26352435 (+) True LOC103041211
TU112312 other upstream 885444 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 984015 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1091809 24827674 ~ 24827756 (+) True trnal-cag_10
trnal-uaa_4 other upstream 1609070 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 1610675 24308808 ~ 24308890 (+) True trnal-uaa_3
TU112640 other downstream 260215 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 417607 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 532757 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 752540 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 752625 26727908 ~ 26747751 (+) False fermt2

Expression Profile