RNA id: XM_007257443.3


Basic Information

Item Value
RNA id XM_007257443.3
length 3578
RNA type mRNA
GC content 0.51
exon number 27
gene id LOC103033987
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25835140 ~ 25916844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACGCCCACTAGGAGGCGCTGGATCCCAGTGCTGGACCCCGGCTGCTCGCGTTctgagagctgctgctgctgctgttgctcaTGAGTCAATGTGCGGAGGCCACTCGTGCTGGCAGCTGCCCCCATTACTCTCCATCATTTCTGATCATTTCCCCTCCTCTGCTGCTCTTTCCCCCCTCGTGCTCTGCTGGAATGCCAGGCATCACCGGCATCGACCGTCCTTTACTATGAAAGAAAGCACGCGGCACCCACAGTAGAGGCTGCACGAGCAGATAGATGAGCGTGTGTGTGAATGCAGATCTTCCTTTTCAGCTGAGATCTTTTTCTGCTcctggagaaacagaagacagggAGAGAAGAAGGGACGCGCTCGTTTGGCggggtttgtttttgtttttggatcctcctcctccttcttctcgcGTGCTGTGGAGGTAAATGTGCAGGCTGAATGGCAGGAGCACAGCCCGGGGTTCACGCGTTGCAGCTCAAGCCGGTGTCCGTCCCGGAGAGTCTGAAGAAAGGCAGCAGGTTTATGAAATGGGATGAGGATTCATCTACAGTGACCCCAGTGACCTTACGTGTGGATCCTCAGGGCTACTTTCTATACTGGACAGACCAGAATAAGGAAACTGATTTGTTGGACATCACCCATATCAAGGATGCAAGAACTGGAAAATGCACTAAAACACCAAAGGAAGCCAAACTGCGAGAGTTACTAGATGTTGGGAACCTGGTGGGGCGGATAGAAAACAAGATGCTGACTGTGGTCACGGGCCCAGACATGGTCAACATCACCTATCTAAACTTTATGGCTTTCCAGGAGGAAGTGGCGAAGGAGTGGGCAGAGGAGTTGTTTAGTCTGGCGTCCAACCTGCTGGCTCAGAACATGAATAGAGAGGCCAGCCTGGAAAAAGCCTACACGAGACTGAAGCTGCAGCCAAACCAAGAGGGACGTATTCCAGTGAAGAACATATTTCGCATGTTCTCGGCTGACAGGAAGCGTGTAGAAACGGCGCTGGAGAGCTGTAATCTTCCATCGGGCAGGAATGATTCCATTCCTCTGGAGGACCTCACTTGCGATATTTACAAGTCCTTCATCGGCAATATCTGTCCCAGACCGGAAATCAACCAAATATTTGCAGATCTTGGAGCCAAGGGCAAGAACTACCTGAGCATGGAGCAGATGACTGACTTCATCAACTTTAAGCAGCGGGATCCACGCCTGAACGAGATTCTGTATCCTCCACTGAGGACGGAGCAGACGCAGCTCCTCATGGAGAAGTTTGAGCCCAGCAACAGCATGATTCAAAAAGGGCAGATTTCAGTGGAGGGCTTTTCCAGGTTTCTGATTAGTGATGAGAATGGTGTGATCCCGCCTGAGAAACTGGACCAGAGTGAAGATATGACCTTCCCTCTCTCCCACTACTTCATCAACTCTTCCCACAACACCTATCTTACAGctgGGCAGTTGGCGGGGAACTCGTCAGTAGAGATGTACAGGCAGGTGCTGCTGTCAGGATGCCGCTGTGTGGAGCTGGACTGCTGGAAGGGCCGCACGGCTGAGGAGGAGCCGGTCATCACCCACGGCTTCACCATGACCTCTGAAATTTCATTTAAGGAAGTAATTGAAGCCATCGCCGAATGTGCTTTTAAAACCTCTCCTTTTCCCATCATCCTGTCCTTCGAGAACCATGTGGACTCGCCAAAGCAACAGGCCAAGATGGCGGAATATTGCCGATCTATCTTTGGAGATGCCCTTTTAACCGAGCCACTTGAGAAATATCCTTTGGAGTCAGGGGTTCCACTTCCCAGTCCACAGGAACTCATGGGGAAGATCCTCGTCAAGAACAAAAAGTCGCACCCCAAGCCGGCGGATGGAAGCACCAAAAAGAAGCTGTCCGAGCAAGCCTCCAACACCAACAGCGACTCCTCCAGTGTGTTTGAGCCATCCTCTCCAAGCGCGGGTCCTGCAGCTTCAGCCGAGGTGGAGgcggatgatgatgatgaggatgatgacgACGATGATGACTGTAAGAAGTCAATGGATGAGGGGACAGCAGGTTCAGAGGCCTTTGCAACAGAGGAAATGTCCACTCTAGTCAATTACATCCAACCTACCAAGTTCCACTCCTTCGAGACCTCAAAAAaagtcaGCCGCAGTTATCAAATGTCATCGTTTGTGGAAACCAAGGCTCTGGAGCAGCTCACGAAGACTCCCGTGGAGTTTGTGGAATACAACAAGCTTCAGCTCAGTAGGATCTACCCTAAAGGAACTCGAGTGGACTCCTCCAACTACATGCCTCAAGTGTTCTGGAACGCAGGCTGCCAGCTGGTGGCACTAAATTTCCAGACAATAGATCTGTCCATGCAGCTGAACCTGGGCATGTACGAGTATAATGGGAAAAGTGGCTACAGACTCAAGCCAGAATTTATGAGACGACCAGACAAGCACTTTGACCCCTTCACAGAGAGCACAGTGGATGGGATTGTAGCCAACACCTTATCGATAAAGATCATATCAGGACAGTTCCTCACTGATAAGAAAGTGGGCGTGTATGTGGAGATTGACATGTTTGGCCTCCCAGTCGACACTAGACGGAAAGCATTCAAAACGAAGACGTCCCAGAACAACGCCATCAACCCGGTGTGGGATGAGGAGCCGATTGTGTTCAAAAAGGTGGTTCTTCCCACTCTTTCCTCCCTGAGAATAGCAGTATTTGAGGAAGGTGGAAAGTTCATTGGTCATCGGATAATTCCTGTGTCCGCCATTCGACCAGGTTATCGATATATTGGATTGAGGAATGAGAAAAACCAGTCTCTGACTCTTCCTGCTCTTTTTGTTTATATTGAAGTCAAAGATTATGTTCCAGATACATTTGCAGATGTCATCGAGGCCCTGTCAAACCCCATTAGATATGTCAACTTAATGGAGCAGAGATCCAAGCAGCTGGCTGCTCTGACATTAgaggaaggagaggaggagaaggatgCCAAAGAGACTGAGCCTGGAGTCGAGCAGGCCTCAGAGGTGAAGAGTGAGCCAAAACCTGTGCCTGTAGAAAATGGCTTGAGTCATGCTCCGAGTGCCACGCCCAAACCGGCCTCCCAGCTCTCCCCACAGCCTCAGCCTACAGGATCAGCTAAACCTGCGGCAAAGACTGAAGATCTCATTCAGAGCGTCCTCACTGAGATGGAGGCTCATACGTTAGAGGAGCTAAAGCAGCAGAAGGTGTTTGTCAGAGAGCAGAGGAGACAttataaagaaatgaaggacCTGATGAAGAAGCATCACAAGAAAACCACAGAAATGATCAAGGAGCACACAACCAAATACAACGAGTTTCAGCACGACTATCTGCGCAGAAGGGCTGTGTTACAGAAATCTGCTAAAAGAGATGGTGTCTCTCCTCCAGCCCGGAGCATGGAGCCTCGTTCTTTGAGCAGGAGCTGGCCAACCTGGACCAGGAGTGTGGTCAGAAGCTGGCTGAGCTgaaagagcagcagcagcagcagctattaAACCTGAGGCAGGAGCAGTACTACAGCGAGAAGTACCTGAAGAAAGAACACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112538 lncRNA upstream 32688 25798460 ~ 25802452 (+) True G83522
TU112455 lncRNA upstream 297870 25517590 ~ 25537270 (+) True G83456
TU112448 lncRNA upstream 339480 25495158 ~ 25495660 (+) True G83449
TU112445 lncRNA upstream 370887 25463900 ~ 25464253 (+) True G83446
TU112437 lncRNA upstream 447550 25370251 ~ 25387590 (+) True G83440
XR_002650361.1 lncRNA downstream 82431 25984681 ~ 25993012 (+) True LOC111193229
XR_002650362.1 lncRNA downstream 82431 25984681 ~ 25993012 (+) False LOC111193229
TU112638 lncRNA downstream 332666 26234916 ~ 26235175 (+) True G83601
TU112639 lncRNA downstream 333248 26235498 ~ 26253602 (+) True G83602
TU112689 lncRNA downstream 372751 26275001 ~ 26305343 (+) False c9h14orf132
XM_007252060.3 mRNA upstream 110231 25718474 ~ 25724909 (+) True LOC103021856
XM_007252046.2 mRNA upstream 117694 25715058 ~ 25717446 (+) True gdf3
XM_022673052.1 mRNA upstream 144246 25684805 ~ 25690894 (+) True crls1
XM_022673048.1 mRNA upstream 151302 25667714 ~ 25683838 (+) False mcm8
XM_007257438.3 mRNA downstream 17307 25919557 ~ 25975283 (+) True LOC103033015
XM_022673055.1 mRNA downstream 17307 25919557 ~ 25975283 (+) False LOC103033015
XM_022673056.1 mRNA downstream 17307 25919557 ~ 25971814 (+) False LOC103033015
XM_022673054.1 mRNA downstream 17315 25919565 ~ 25975283 (+) False LOC103033015
XM_015607884.2 mRNA downstream 372770 26275020 ~ 26305383 (+) True c9h14orf132
TU112312 other upstream 801019 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 899590 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1007384 24827674 ~ 24827756 (+) True trnal-cag_10
trnal-uaa_4 other upstream 1524645 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 1526250 24308808 ~ 24308890 (+) True trnal-uaa_3
XR_002650360.1 other downstream 17307 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 333248 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 490640 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 605790 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 825573 26727823 ~ 26747751 (+) False fermt2

Expression Profile