RNA id: XM_007257462.2


Basic Information

Item Value
RNA id XM_007257462.2
length 2156
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC103041814
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26328801 ~ 26330956 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCTCTGATAAAGAGAAGGTGCTTTGCTCCTTTTCATCCTGCACTTTTGTTTTGGGCTTCATCTGGTGCACATCGCCGAGCTTAAACCATTTCTTTCCGTTCACAGTTGAATAACTTCTATAACTCGATTTTGCAGCTTCACGGAGCCTTGAGATATTCTGTCAGTTCGGTTTGACACATATATCTGTTCCCTGGAACAGCATCTGTGATGATTTTGAACACGACTGCCGGGCCATCCCTGGAGCTGTCTGACAGGGAGCTGCTGGAGTGTAACCATACAGAGGCCTGGGACTGGGTGTACTCCATTCAGCCGGCctacatgtctgtcatctgctttCTGGGTGTGTTCAGCAATGCCTTTGTCCTGTCTGTGTTCTGCATCCAGAGAGGGCACTGTTCTGTCGCGGACATCTATCTGGGGAACCTGGCTGCTGCAGATTTGCTCATGGTCTCCTGCCTTCCCTTCTGGGTCATCACGGTCATCCACAAGTTCAACTGGTCATTCGGTGAGCCAATGTGCCAACTGGTCAGCCTTGTAATTGGTATGAATTACTACTGTAGTGTCCTGTTCCTTACGCTGGTTAGCCTGGACCGTTACCTAGTGCTGGTGAGGCCCATGTCGATGGGCAGGCGAAGAGGCGCCAAACAAGCCAAAGCCATCTGTGTAGTAATCTGGCTTGCTGGATTTTTCCTCAGCCTTCCTGCGTTGCTCTTTCGCTCAGTGCGATTTTTCCCTGAATTAGAGGCTGAGGCATGCTACCTGGAATACCCTCATGACGGTTGGAGGGTGCGCTACAACATGACGGTCAATGTGGTGGGCTTTCTGGTCCCAGTGCCCCTGGTATGCTATTGTAGTTATCACATCATCACAGCCCTCGGGGACAAACAAGTCAGGAGGTGCTCATCTGTATCAACAGAAAGAAAGGCTGCAGTCTTGGTGCTCGCTGTCCTGTTCGTTTTCGTTCTCTGCTGGCTGCCTTTTCAGATTTGTATGTTTCTGGACACCCTGTATTACTTTAACATTATCTCTGGTTGCCTCTGGATCAACGGTCTGGACATAGCAACCCAGCTGTCCACCTACCTCGGGTACAGCAACAGCTCTCTCAACCCCTTCCTGTACGTGATAGTAGGTAAACACTTCAGGCAAAGAGCTAAAGGACTTTTCGTGCAGTTTCTGAACTTTGGAAGTCAAGGAGTCTCTCCTGCTTACAAAATCTCAAAAAACTCAAGTCTCAGAAACACAGAGTCCACCAggctgtgagctgatgttgACGGAGTTGCAGCGATTCCACAGTGCCCTCTTCTGTAAGGTGATTGTAATGACTAGTAAACTGATCCAGGCCTCTTActgactgtctttttttttgcactaaattTTTGAATTAATTAGGAATGCAACAAATATTTGAcaactaaaatatattacacagaaaatggcaaaaaaaagacTTCTGGTGTCATATTGTGCTTTGTTATTGTGCCTGCTGGGATGTTAAAACAATTCAGAGTGGAATAAATAGTTTGGAAAAAGCATAACAACAGTTATTTGCTGTGTAACCGAGAGAAGAAGAGCAAAATAAAGTGTGGCTGCTATTTTCCCTCATTGGGTCTgagtgctttttattttattaataataaagtattagGCGAACCCTAATAAGCTTGGTTACACTGGTGGCAGCGGTGGGATAATAATTTGTTATGGGTTTCTGTAGTTACTACTATTTGGTGTTCTAATAATGTTGTTGGCTAtatttgttgtgtttattttgaggtCATAGCTGTCACAGTTGCAGTTAATAAACGGGGACGTTGAAAAATGAAAGGGTGGGACATATGTAACCGAATATATAAGGAATATTGAGTTATGGAATGTGTATGTACACTGAATGTCCTGCTGGGGTAGCCGTAgggcagagagaaaaaaaagagagaagaagagcaaAATAAAGTGTGGCTGCTATTTTCCCTCATTGGGTCTGAGtgcgttttattttattaattataaagtaTTAGGCGAACCCTAATAAGCTCGGTTACAGCTGTATGTCAAGCAACAAGAATGAAAAGTGCTATTATGTTTTGTTGGAGGGGCTTACAGCTTGATATGtcattgtatatttaaaaaaataataaacttttcCATTACTCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112701 lncRNA upstream 1515 26326032 ~ 26327286 (+) False LOC103031022
TU112700 lncRNA upstream 17853 26310709 ~ 26310948 (+) True G83649
TU112689 lncRNA upstream 23458 26275001 ~ 26305343 (+) False c9h14orf132
TU112639 lncRNA upstream 75199 26235498 ~ 26253602 (+) True G83602
TU112638 lncRNA upstream 93626 26234916 ~ 26235175 (+) True G83601
TU112716 lncRNA downstream 8226 26339182 ~ 26339699 (+) True G83661
TU112718 lncRNA downstream 8875 26339831 ~ 26340272 (+) True G83663
TU112730 lncRNA downstream 91558 26422514 ~ 26423061 (+) True G83672
XR_002650367.1 lncRNA downstream 176383 26507339 ~ 26509319 (+) True LOC111193231
XR_002650364.1 lncRNA downstream 177655 26508611 ~ 26565844 (+) False LOC111193231
XM_007257434.2 mRNA upstream 1463 26321185 ~ 26327338 (+) True LOC103031022
XM_015607884.2 mRNA upstream 23418 26275020 ~ 26305383 (+) True c9h14orf132
XM_007257438.3 mRNA upstream 353518 25919557 ~ 25975283 (+) True LOC103033015
XM_015607885.2 mRNA downstream 971 26331927 ~ 26335823 (+) True LOC103041516
XM_007257461.3 mRNA downstream 20175 26351131 ~ 26352435 (+) True LOC103041211
XM_007257433.3 mRNA downstream 26823 26357779 ~ 26360746 (+) True LOC103030701
XM_015607915.2 mRNA downstream 61934 26392890 ~ 26399267 (+) True spata7
XM_007257430.3 mRNA downstream 61934 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 79705 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 356558 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1294680 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1393251 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1501045 24827674 ~ 24827756 (+) True trnal-cag_10
XR_002650363.1 other downstream 61934 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 177084 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 396867 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 396952 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1484849 27815805 ~ 27819547 (+) False fam98b

Expression Profile