RNA id: XM_007257570.2


Basic Information

Item Value
RNA id XM_007257570.2
length 1686
RNA type mRNA
GC content 0.46
exon number 6
gene id erich1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8415207 ~ 8442555 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCGAAGCGGTGAGGCAGTTAGCGACCGGCAGCCTCCGCCATGTTGGTGAGGTCAAGCTCAGCGTTGTGCAGCTTTATAGTGTTGCTTTAGCTTTTAGCGCTTAAACTTTGCGTGTTTTCCTAAAGATGCGTTATATTTGTATAGAGTTTGAGAGGAATGTCGCGTTTTAGTTGTCGTTAAAAGCTGTTTTGCGCCTCGTTGTGGCTGTTAGCTTGCCTAGCTTGGTGGCTAGCATTCTCATATGTCTGAGTTGCTTGTTAGTTAGCTTTCTAgcttagccagctagctaacgtCTTAGTTCACGAATAGTTACCTaaaattctttgtttttctgaGGGAACATGTTTGGAATTGGGTGAATTTAGGACAAGGAGAAGAGTGGAGTGAACCTGGCTAACAGTTATGGCGTTTAGAAAAGAAGTTTTTCAAGCCAAAGTCCTTCAGAGACTCTATCCTGCTCCCGCCCCAAAGGCAGAAGTGCAGGACTCCCCGGGTGACAATCTAGATTCTGCTTCTAGAACAGCTAAACTGAAGCAGAATAAAACTGCTGGTAGTGTTGGAGCAAGTAGTTTACCAGCCAAGAAGATATACACTGTCCTCCCGCCTCCTGAAGACTATAGGCCTTCCAGCAGGGATGAGGAGCTGAAGACCGTCAGCAGTTCAGACAGGACGGCCGTTGATCTTTCAGATTCAGGGAATAGTGATTCTGCTGAAGGCCAAGACCATGTGCAGAGGAGAAGAAAgcgaaggagaaagagaaaggcagacagtgctggagctgggggaACAGGCAGCACACCACTGGGAAACCCAACTCAGGAACAAGCAGAAAAGGCTGAGGGAAGAAACGGACAGACTTTGGAGGTCCCTGAGGGCCAGGAGATACTCAGCAAAAGTAGAAAGAGGAAGCTGAAGAAGAAACGGCAGAAAGAGAAACTCCGTTCAATCGGTGTGGTGACAAAGTCCAGACCTCTGGAGTTTACCTATAGAAGGGATGGGGGAAATGACGAAGAAGTGGAGGAGGAGAATGTggaagaaaacaacaaaaaggtagAAGAGGTTGTGCATTTCCTGAGAACCATGTGGGACATCTACCTTTCAGATCgCTCCAGTACTGCAGACAGAACCTGTCTTTCTCTAAGCACAGCTGAGTCTCTGTTCACTTGTCTCTCAGAAGGTACGGCGCCCCCTGCCGCTATGTCCGGTCTGTGCAGGCTAAGGACTCTGCTGGGCCAGAGGGATGTGGAGCAGTTAAACACAGCGCTACAGGAGTTCAGCCATACCTCCACACTGAGCACAGATGAAACTGTGCTGGTCCACACTCTCTTTAACTACTGGATGACAGAAGTTCTTCCCATGCAGTCTCAAACAGCAACGTGACAGTGGAACACAACTTGTGTAACCTCCAGCAGttggattatatattttttctatttttatggaCTGTTTGCATACTGCATGCTTCTGTATTCTGTGAAGACATGCTAAACATATGTATAAATGTTTGTAGCAGTTTATGTTCTGTTGACACAATCCGAAGACCAGCCTGATCAGCCAGATCAAGGTTTCCCTAACTTTTAACAGAATATCCagtaaaagtgcattttttttgaCATGGACAAGACCTTATTTGTAGGACTGGCCTTAACAGCGTTTTCAGtctgtgtacatatatattttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106207 lncRNA upstream 7686 8407160 ~ 8407552 (+) True G78794
TU106201 lncRNA upstream 58752 8356084 ~ 8356486 (+) True G78792
TU106204 lncRNA upstream 58752 8356127 ~ 8356486 (+) False G78792
TU106195 lncRNA upstream 82804 8282940 ~ 8332434 (+) True G78786
TU106168 lncRNA upstream 418431 7994627 ~ 7996807 (+) True G78760
TU106210 lncRNA downstream 20869 8463424 ~ 8485261 (+) True G78797
TU106221 lncRNA downstream 33955 8476510 ~ 8510824 (+) True G78806
TU106223 lncRNA downstream 35451 8478006 ~ 8479587 (+) True G78808
TU106225 lncRNA downstream 69842 8512397 ~ 8512647 (+) True G78810
TU106238 lncRNA downstream 87299 8529854 ~ 8541861 (+) True G78817
XM_007257576.3 mRNA upstream 606288 7802220 ~ 7808950 (+) True ppie
XM_022672468.1 mRNA upstream 615979 7766569 ~ 7799259 (+) True LOC103024072
XM_015607946.2 mRNA upstream 650561 7759849 ~ 7764677 (+) True LOC103024901
XM_022672660.1 mRNA upstream 670776 7682841 ~ 7744462 (+) True lck
XM_022672659.1 mRNA upstream 747437 7656307 ~ 7667801 (+) False fam167b
XM_007257597.3 mRNA downstream 27046 8469601 ~ 8507161 (+) True LOC103031442
XM_022672670.1 mRNA downstream 109893 8552448 ~ 8566788 (+) False hmgcl
XM_007257567.3 mRNA downstream 109893 8552448 ~ 8563360 (+) True hmgcl
XM_007257562.3 mRNA downstream 180846 8623401 ~ 8634193 (+) True trmt61b
XM_007237296.3 mRNA downstream 1052894 9495449 ~ 9554725 (+) True spata17
TU106111 other upstream 686237 7656329 ~ 7729001 (+) False fam167b
TU106110 other upstream 744464 7656329 ~ 7670774 (+) False fam167b
TU106040 other upstream 807574 7594707 ~ 7607664 (+) True G78671
TU105776 other upstream 1554081 6857409 ~ 6861157 (+) False LOC103024862
TU105595 other upstream 2887273 5452115 ~ 5527965 (+) False LOC103025550
TU106244 other downstream 93361 8535916 ~ 8537682 (+) True G78818
TU106242 other downstream 99573 8542128 ~ 8549968 (+) False G78817
TU106236 other downstream 100630 8543185 ~ 8549968 (+) False G78817
XR_002650310.1 other downstream 1052894 9495449 ~ 9554528 (+) False spata17
TU107028 other downstream 2364816 10807371 ~ 10813470 (+) False fam98a

Expression Profile