RNA id: XM_007257592.3


Basic Information

Item Value
RNA id XM_007257592.3
length 4703
RNA type mRNA
GC content 0.54
exon number 35
gene id rab3gap2
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7284848 ~ 7312292 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGCGGAGCCCGAGCTTCCTCCACAGCTGAGGATGTGTCACTCACTCAGCCCGAGAGCAAAACAACAGTTTGGACCGAATTTCTCTCTGATTTTAcccacatttattcatttttctaaCATTTGAAAACCGCCTGCACCTTGTAGGTAACACATAAACGGGTTTATAATTTTAGGCGAGCATTTAGAGCCGCAGAAACACTGTATTTGCTGcgtctcctgctgctgctgctccttaaTGCCCCAGCCCGGGGCAGATTAGCCACAGGCTGAGCTTTGCCTCGCCGTGTAAGGATGTCCTGCTGTCTGCAGGACTTCTGTCGGGTCCAGGAGCTCCGGCAGGTCCGGGAGTTCCTCTTCCCCAGCCAGAAGCCAGCTGCTGCGGGGCCGGCGGAGAGCAAAGACCCAGCAGaGAATGAGTTGACGTGGGATGACTCAGACTGGGGATCGTGGGAGACGTCAGCAGAGAATAAAGAAGATGGAGAGACGgctgAAGAAGAGGTACAGCATGGGCCGTGGCTGCAGGACTgtgttctctctatctctccgtGCTCAGACCTCATGGTCATCGCTCGAGAACATAAGGCTGCATTTCTCTCTGCTAAATGGCAGAATGATGACTCTGGGAGGGAGGAGATGACCCTGGCAGTGTCCTGGAGTGGTATGCTGAACGCTGAAGAGGGAGAATGTGTGAGCAGTGTCATTTGCATACCATTGGCCAGCCAGAAGAGAAGTTCCACAGGACGTCCTGACTGGACCTGTATTGTGGTTGGGTTTAGCTCTGGATACGTTCGCTTCTACACAGAGaaCGGTGTTCTGCTTTTGGCTCAGCTGCTGAATGAAGATCCTGTTCTTAGACTGAAGTGTCGGACATATGAGATCCCACGCCATCCTGGAGTTACTGAGCagCATGAGGAGCTGAGCATCCTGTACCCCACCGCTCTGGTCACTATCGATGGCTTCAGCCTCTTTCAGTCTCTACGTGCCTGCAGGAACCAGGTGGCTAGAGCTGCTGCAGCAGGAAGTGATGTCGTACAGCCTCCCCCACTTGCGTATAAGAAGTGGGGCCTGCAGGACATGGACACCATCATAGACCACAGCAGTGTGGGCATTATGACACTGAACGTGTTTGATCAGATGAAGAATGCCTCGATCCTCGGGGGATTCCACGCCTCAGTGAAAGGCAGCCCTCCTGCCATGAGTCAATATATAACTGTGGGAGGTGGACCTTTCACTGGTTTCTACTATGCTGTGGAGGGCAGTTCTCAGCCTCTTCTCTCCCATGTGGCTCTTGCCGTGGCCAGTAAACTCACATCAGCCCTGTTCAGTGCTGCCAGTGGATGGTTGGGGTGGAAGAACAAGAATGAGGAGGAGCCAGCTCAAAAACAGAAGCCTAAAGTGGAGCCCGCCACGCCCCTTCCTGTTCGatttggcTTGCCTGACTCTCGTCGCCATGGCGAGTCCATCTGCCTGTCGCCATGCAACACCATGGCAGGTGTAACGGATGACTTTGGTAGAGTGACGCTGCTGGATGTGGCACGTGGCATAGCCATCCGCATGTGGAAGGGTTACCGTGATGCCCAGCTGGGCTGGGTGCAGGTGTCTGAAGctcggggagagagagagatcgccACTTCCCCCTCCATGCCCCGCCGACACGCACAGTTCCTTGTTATTTACGCCCCCCGAAGAGGCATCCTGGAGGTGTGGGGCACACAGCACGGCCCCAGAGTCGGGGCCTTTACTGTGGGCAAACACTGCAGGTTGTTGTATTCAGGATACAGGTTAATGGGGGTGAACAGTGTGACGAGTCAGGGTTGGCATTATAACACACAGCAGGTGTGTCTGTTCGACCCTTCAACCGGAGCCCTGCGTTCTGTCACCATTCCGTTTCACTTGGCCctcagTGATAAGAAAAGTGAGCGAGCTAAAGACATGCACTTACTGAAGCGACTGACGGCTCTGCTGAAGAGCAGGGAGATCGACCCAGCTCTTTTGGAAAGTGAGGCACAGAGTATTCTGCTGGAGATCAAACACCCTGCCGTTAAGAAACAGGCACTGGAGTCTCTGCTGGCCAATAAGAACGCTCCAGTCTCATgtctgaccaacatcacacaaGCTCTGTTGGCCAGCTTAAAGGAACAAGACCCTGAGGCTGTAGATGATGCTTTGCTGCAGTTGTGTTCCTCTCAGCTCAAACTGCTGCAGCTCTACTCGGATGTTCAGCTGCTGCACTCACCTGATACCTCACCTTCTGAAACAGAACCtcTCTCATTAGCCGGTATTGAAGAGGATTTGGCTCGAATTGGACCAATCCTGCGGCGCTACACTGAGCTGAACTCCCGCCCCTGTGTCACATTTGCTCAGGACCCCGGGGGGCCGCTACCTGTCAGAGCCTTCCTGTCCCAGCTGGTGTGTGAGGGAGGAGAGCTGCGTGTGATCCGAGGCCCTGACACGGACTGGACACACCTCGgtagTTTTCTGTTCTGGGGCTGCCTTTCTGGACAGAGCCCACTGGAGAAAGTGTGTGAGACATTACAGCAGAGTGGCATCAGCCCTCAGCAGCTGCTGTCTCTGCTGTTGACTGTGTGGCTgaacagagagaaggagattTTAAAGAGAGCAGATGCCATCAGGAATTTACACACACTCCTTAACACACTCAGCTCTATGAAAGgAGCTGTGGAGGAGTCGTGGGACGTGCAGTGTATCTCCCCCTGGTGGCAGCAGGTGCGTAGTGCCTGTGTGCAGTCAGAGAGCGCTGGCGCCGCCCTGCTGGCTGCACTCGTCGCACACCGCGCTGCGAAGAGCTCCATCACCAGCCTGGCCGAGAGCAAGTTTCAGGGGGACTGGGAGTGTGTAtctctggagctggagcagtggGTGGTGTGTTTGAGGCAGCTGGAGGACGTGCTGGCACTGCAGACGCTGTTGAGCCTGCCACCCCCCCAGGGATCACCAGGAGGCGCCGTGCAGCGCTGCTCAGTCAAGTCCCTGCTGGAGAGCGGCCGAGgaGGCGTGGCAGACAGTGTAGCAAAGCTGATCTTTAGGCAGGATGTTCCTCCTGAAATGCTGAAGGACATTGTGCAGCAGAGGGAGGAGGAGCAGCACACGGAAGAGCCTGTGGAACAGCtgttacagcagcagcagcagcaggtggaggaggagaaggagatgAATGGTGTTCAGAAACTAGAGGAGCTGCTGGCGTGTGTGTGTCAGCGCTTCCCCCACTCTCTCGCCATTGATGTGTTGTGGGCTCACTGCTGCTGGGAGTATGTGGTACAGTGGAACAAAGACCCTGAGATGGGCCGGTATCTGGAGTGGTCAGTGGAGTATCTAAAGATGATCTCTAGTTCTCATATTCAGTTAGgaATCTCCAGTATGATGTGGAACACGTTTATTGTGAAACgtttctctgctgctgctttccTAATGGAAAAGGTGGGCAAGGCTCCGAAAGACCGACTGTGCAGACGGgACGTGGGGATGGGTGACGCAGCCATGACGAGTTTCCTGGGCTCGTGTGTGCAGCTGCTGCAGACTCTGATGGAgGCGGACTCTGGGGTGGAGGAGGCTTATGtgccagagctgtgtgtggaggaggTTTGGGGGTCCGCTGAGGGTCCGGCGTCTATAGCAGAACTGGCTCTGCAGCAGAAGGCAGTTCACTACCCGCTGGTGCAGCACCACTGCCTGCTGGCGTCACTACTGCACGCAGCCATGAGCTTCTCCCTGCGCCTCAAACCCCTCAGCCTCTTCGACAGCAAGgggaaaaatgcatttttcaggGAACTGACATCAATCCAACTCCTGCCCAGTGGTGACATGGACCCTAACCTGGTTGCGATCAGACAGGAGTTTTTGATGCTTGTGTTGACTGGCTGGGTGAAGGCGGTCGGTGAAGCAGAAGACACTGGCTCTGCTAAAGTAAGCAGGGACATGGACTGGCCAGCAGTGTGTATGGAGCTGGCCTCTCTGCTGCAGGTCAATGCTGACATACTGCGCAGACATCTCGTCTGGGAGCTCTACAACCAGGGCCTGGACCTGCGCGCTGAGGAGGTGATGTTGGAGGTGGAGGATAAAGATGTGTTGGGCTCTCAGCTCCTCGTGCTTACCGGTCAGCGACTGGCCTTCTCTCTGCTGCACTCACAAACACAGACCAAAGCCACCATGGAGCTTCTCGCACGATTGCCCCCCACCCTGTGCACGTGGCTTAAAGCAATGGACCCGAGTGAGCTGCGCTGTCCCTCAGTACCACTGAAGCAGAGCAGCCGCCTGGTGAGCAAAGTCATCGAGATGCTGCCGGAAAACCACGCCCAGTACAGCCTAGCACTCCACCTGCTGGAGACTGTGGACTCGCTACAGGAAAATGAGTGAGGGAGaagcagagagagcgagagagacagagagacggtAGCAGGAGGTagggataaagagagatagagagataaatagGGATCAAAGGCAGGAGGAAGAAATGTCAGAAACGGATTTGGAGGGGAAAGAGACTTCTTAAGCACAGGTCTCTGACTGAGACTGGCTTATTTTCAGGAGTTGTTTGTCACTTTTTAAAGTCTGCTTTAATGTATCTTGAGGGCTTTCAAGGCAATCAGAGATCAtctgaatcaatcaatcagatAATTGAATAGTTGagcaaaaaaacatcaaatttgCACAATTTTCTACTTATTTcagatgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105945 lncRNA upstream 984 7282651 ~ 7283864 (+) True G78602
XR_002650305.1 lncRNA upstream 29931 7252132 ~ 7254917 (+) True LOC111193179
TU105864 lncRNA upstream 315669 6968866 ~ 6969179 (+) True G78542
TU105849 lncRNA upstream 356792 6927354 ~ 6928056 (+) True G78531
TU105946 lncRNA downstream 7317 7319609 ~ 7321250 (+) True G78603
XR_455482.3 lncRNA downstream 30901 7343193 ~ 7346450 (+) True LOC103029755
TU105961 lncRNA downstream 30930 7343222 ~ 7346450 (+) False LOC103029755
TU105997 lncRNA downstream 77173 7389465 ~ 7389689 (+) True G78646
TU106026 lncRNA downstream 235164 7547456 ~ 7552368 (+) True G78668
XM_007257595.3 mRNA upstream 7745 7255113 ~ 7277103 (+) True LOC103030509
XM_022672650.1 mRNA upstream 40096 7226490 ~ 7244752 (+) True LOC111193178
XM_015606155.2 mRNA upstream 211340 6974915 ~ 7073508 (+) True hhat
XM_007230067.2 mRNA upstream 390271 6886115 ~ 6894577 (+) True LOC103028981
XM_007230056.3 mRNA upstream 400752 6872563 ~ 6884096 (+) True LOC103025489
XM_007257587.3 mRNA downstream 98137 7410429 ~ 7443721 (+) True rtn4ip1
XM_022672659.1 mRNA downstream 344015 7656307 ~ 7667801 (+) False fam167b
XM_022672660.1 mRNA downstream 370549 7682841 ~ 7744462 (+) True lck
XM_015607946.2 mRNA downstream 447557 7759849 ~ 7764677 (+) True LOC103024901
XM_022672468.1 mRNA downstream 454277 7766569 ~ 7799259 (+) True LOC103024072
TU105776 other upstream 423691 6857409 ~ 6861157 (+) False LOC103024862
TU105595 other upstream 1756883 5452115 ~ 5527965 (+) False LOC103025550
TU105324 other upstream 2986664 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 3864849 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 3867937 3416839 ~ 3416911 (+) True trnav-aac_3
TU106040 other downstream 282415 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 344037 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 344037 7656329 ~ 7729001 (+) False fam167b
TU106244 other downstream 1223624 8535916 ~ 8537682 (+) True G78818
TU106242 other downstream 1229836 8542128 ~ 8549968 (+) False G78817

Expression Profile