RNA id: XM_007257898.3


Basic Information

Item Value
RNA id XM_007257898.3
length 1839
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC103044683
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4007515 ~ 4011258 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTTCAGTCCCGAGTCGATTCGGATTTTCTTATGAGCTGAAAGGAACCGACTCATCGGAACGAATCATTCACGAGTGGCTGACTGTCTGCACATGTGTGTTTACATGTGGCGCGTGCGCACGTCATCTCAGTAACTGGCTCTCCATCATCATCTATCTACAGGTCAGAAACACAGCGTGGAGAAACTGATCTACAGCTCCGGCTACATGTGTCTCTAGCTCAGctcctgtgttttatttaaactggTTAAAATAATGGTAGATGTGGGGCTGCCGGAGGAGGTGTGGGTCCATGTGTTCGGGTTCCTCTCCTCTGCTGATAAACTCAGCGCGCGCTCGAGCTGCAGGTTCTTCAGGAGGCTGATAGACCAGCCCGCCCTGTGGAGGAACAGCACGGTGTACCTGGAGAAACCGAGCTCCTACAGGTCGCACTTCTGGAGGACTCTGGGCCGGAGGAGGACCAGCTCGGCTGTGGTGCTGAAGGGGACTAAAGTGCGCGAGTGGACCGAGCTCGCGCGCCGGTTGCCCTGGCTGGTGTCGCTCACTCTGCGCGCGTGCGGTAACCCTAAAGCTCTGGAGGCTCTGGCTGAGTTTAAGAAGCTGCAGCGGCTCGAGATTCGCCTCTGCCGCTGCCCGAGCCTGAGTAACTCACTGACCGCGCTCTCACAGCTCACTCACCTGGGCTTCTGCGAGGTCTCCTGCGCTCCTGGAGCAGATATCACCGGCGCTGTGTCCCAGCTCTCCAACCTCACATCCTTCAGCTACCATGAGGGAAATAAACTCATCCCTAAAGCAGCTCTTCATAAACTACTGCGGAACCTGACCAACCTGAAGCGCCTGTCCTTAAAACTGCTCACCATGCAGGGCTCCCTGCCCTCTGATTACCTGTGTCCAGCTAAAACTAACTGGCAACCTGGAGAGTCGAAGTATGAAACTCTAGGCCTGACCAGTCTGGAGTTGCTGAACTACATGGACCCTGTTCTCTCTTCAGGTGCTCTTCAGAGCTTTCCCTGCCTTACCAGTCTGACAGTTCAGTATAGAGACTGGGCGTCAGATTCCTGCCCGTGTCACCTCAAAACATGGCTCTCCACCCTGCCAGTCCTCTCAGAGCTCAGCATTTCTCGGGGGCATCCACTTGGGATGTATTCTGACTCAGTGCCGGGGACAGTGCGGAGCTTGTCCCTGAAAGGAGTGAGGACAGAGCTGAGGACTGTGAGAGACGTGGCGCAGCAACTGCCAGATCTGTTGTTTCTTCACTTGGACCTGTACTGCCACGAAAAGCAAAACCTCATAGCTGAGGTTCCTCAGCTTTTCCCCAAAGTTCAGACCCTGGAAATGAGgcaCCACAATGTTCCTAAGACAGAGTTTCTACAACTTGCACAGATGACCCATCTCAAACGCTTAGTGGTTCTGGACCCTTACATGGACCCCAGCTCTGCTCTTACTGATCTCACTAACAAACTGCACTTGCTGACGAACAGCAGAGTCCGTGTCATACATTCCTCTGAACTAAGGGACCGAAACGCCTGCCTTTGTGCACAGCACTAAAAAGGATTGAAGAAACCAAAAagctttatttgtgtttttcttttcttttgaatGTATGTGTTTTGCATCTTCTCTTTGAAAGCAGTTCAAGTTGAAGCACAAGTTATAGGCTGAGTGGACAGATACATCAGTCAAgcacattatgaccacctccttttaTTTCTATACCCATTATCCATTTTGTAGTTCTGTATTTACAAACTGTAGTTCCTCTGTAcgcataccgtatttttcgcactgttaggtacactggattataaggcgcactaatcaataaacgtctattttctg

Function

GO:

id name namespace
GO:0006265 DNA topological change biological_process

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105134 lncRNA upstream 85686 3916804 ~ 3921829 (+) True G77961
TU105133 lncRNA upstream 88862 3916804 ~ 3918653 (+) False G77961
TU105125 lncRNA upstream 182643 3798018 ~ 3824872 (+) False g2e3
TU105124 lncRNA upstream 183241 3765780 ~ 3824274 (+) False g2e3
TU104988 lncRNA upstream 457900 3542252 ~ 3549615 (+) True G77847
TU105259 lncRNA downstream 1492 4012750 ~ 4013009 (+) True G78053
TU105261 lncRNA downstream 21005 4032263 ~ 4032562 (+) True G78055
TU105263 lncRNA downstream 25056 4036314 ~ 4036575 (+) True G78057
TU105265 lncRNA downstream 34179 4045437 ~ 4104453 (+) False G78059
TU105266 lncRNA downstream 34179 4045437 ~ 4104875 (+) True G78059
XM_007257903.3 mRNA upstream 91738 3907898 ~ 3915777 (+) True ap4s1
XM_007257912.3 mRNA upstream 128197 3868553 ~ 3879318 (+) True coch
XM_022672611.1 mRNA upstream 149060 3853606 ~ 3858455 (+) True LOC103022404
XM_022672610.1 mRNA upstream 154391 3825628 ~ 3853124 (+) True scfd1
XM_022672461.1 mRNA upstream 182700 3813883 ~ 3824815 (+) True g2e3
XM_007258890.3 mRNA downstream 287538 4298796 ~ 4308409 (+) True klhdc1
XM_007258891.3 mRNA downstream 299059 4310317 ~ 4313788 (+) True dnaaf2
XM_007258893.3 mRNA downstream 311296 4322554 ~ 4329505 (+) True klhdc2
XM_007258894.2 mRNA downstream 343498 4354756 ~ 4364804 (+) True mok
XM_007258895.3 mRNA downstream 344309 4355567 ~ 4364804 (+) False mok
trnav-cac_1 other upstream 587516 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 590604 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 591275 3416168 ~ 3416240 (+) True trnav-aac_2
TU104827 other upstream 1029421 2900134 ~ 2978094 (+) True G77722
TU105324 other downstream 278249 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 1440857 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 2846151 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 3583449 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 3645071 7656329 ~ 7670774 (+) False fam167b

Expression Profile