RNA id: XM_007257903.3


Basic Information

Item Value
RNA id XM_007257903.3
length 1385
RNA type mRNA
GC content 0.41
exon number 6
gene id ap4s1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3907898 ~ 3915777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcaATACAGACATCTTTACTAGCCAAGATAGGTTAGTAAACTGCCTTATAGCTAAGTGAAATATATTGTGGGCAGTAAGGCATCAACTGGGCAtttatttcacacttttcagacacagtgattcccacccctagtatgaAGTATGTCGGCTAGCTACGATAAATCTAAAGCTAACAAGCAAAATCACTGTAACCCAGATTACgttagttattttagctagatCAGTTAACCCCTCATCTCCACACTATCTGTCCGAGGTTTTGAAGGGGTATTTCTGTGTCAGTCCACTGCACTGCTTAACTAAAGCTCAGACTAAGctgtctgttctgttctgagCGAGTAAACGCGGAGAGAAGTCCCCGGACGGGTCGCTAACGAGCTGAAGTAGCTTCATAAAGACTGGAAGCACGCCGACGCCATGATGACCAAAACAAAATGGCTGAACGGGAGATTAGTTGACAAAGTCAGCAGGGCTGCGTGAGGAGCGGCTTCCTCCGGGTTACCACAGCTGAGGGTGAACTGTATCAGCTCAGAGGAACCGCACACAGCGAGGAGAAGATCCCACATCGTAGTGTTCTTTATAGTGTTCCCACCTTCCCAATTGACCATGATCAAGTTCCTGTTGATGGTCAATAAGCAGGGGCAGACTCGCCTGTCTAAGTACTATGAGCATGTGGACATAGGAAAGAGGGCTGCCCTGGAAGCAGATGTGGTCAAAGGTTGTTTATTTCGCAAGAAAGAGGAGTGCTCATTTGTGGAGTATAAGGACTACAAACTGGTCTATCGTCAGTATGCAGCTCTTTTTATTGTCGTCGGCATCACTGACAGTGAAAATGAACTCTCCATCTATGAGCTCGTCCACAACTTTGTTGAAGTGCTCGACAAGTATTTCAGTCGTGTGAGTGAACTGGATATCATGTTTAACTTGGATAAGGTGCACATCATTCTTGATGAGATGATCCTGAACGGACACGTTGTGGAGACGAACAAGAACCGCATTCTGGCTCCTCTACTGGCTTTAGATAAGATGGCAGAAGGATGACAGACAGCtactctttttatttaaacactgaAACTGCAGCaatatatgttatttttatttgttaggCATGATTTAAGTATTCATAAGGGAAATACTCTTGTATATACGAATAATggcctttaaaagacttttaaaagtcttttacatacctttacatatatttttcttatatatatatatatttttttttgtttttcttttttataagtTCTCAAAGTTGTTCAGCAAGAAATGGATTTTCTGCATGATTTTACCGACATGTTTGCGTTTACATTAcagaattaaatgtaataactgCTGTATATCATGTGCTGCTATATAAATGTTTACCTGCTTGGCTTTA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12403 AP4S1; AP-4 complex subunit sigma-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105125 lncRNA upstream 83026 3798018 ~ 3824872 (+) False g2e3
TU105124 lncRNA upstream 83624 3765780 ~ 3824274 (+) False g2e3
TU104988 lncRNA upstream 358283 3542252 ~ 3549615 (+) True G77847
TU104955 lncRNA upstream 513022 3394380 ~ 3394876 (+) True G77817
TU104946 lncRNA upstream 548165 3322085 ~ 3359733 (+) False traf3
TU105133 lncRNA downstream 1027 3916804 ~ 3918653 (+) False G77961
TU105134 lncRNA downstream 1027 3916804 ~ 3921829 (+) True G77961
TU105259 lncRNA downstream 96973 4012750 ~ 4013009 (+) True G78053
TU105261 lncRNA downstream 116486 4032263 ~ 4032562 (+) True G78055
TU105263 lncRNA downstream 120537 4036314 ~ 4036575 (+) True G78057
XM_007257912.3 mRNA upstream 28580 3868553 ~ 3879318 (+) True coch
XM_022672611.1 mRNA upstream 49443 3853606 ~ 3858455 (+) True LOC103022404
XM_022672610.1 mRNA upstream 54774 3825628 ~ 3853124 (+) True scfd1
XM_022672461.1 mRNA upstream 83083 3813883 ~ 3824815 (+) True g2e3
XM_007257917.3 mRNA upstream 423236 3482138 ~ 3484662 (+) True foxg1
XM_007257898.3 mRNA downstream 91738 4007515 ~ 4011258 (+) True LOC103044683
XM_007258890.3 mRNA downstream 383019 4298796 ~ 4308409 (+) True klhdc1
XM_007258891.3 mRNA downstream 394540 4310317 ~ 4313788 (+) True dnaaf2
XM_007258893.3 mRNA downstream 406777 4322554 ~ 4329505 (+) True klhdc2
XM_007258894.2 mRNA downstream 438979 4354756 ~ 4364804 (+) True mok
trnav-cac_1 other upstream 487899 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 490987 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 491658 3416168 ~ 3416240 (+) True trnav-aac_2
TU104827 other upstream 929804 2900134 ~ 2978094 (+) True G77722
TU105324 other downstream 373730 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 1536338 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 2941632 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 3678930 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 3740552 7656329 ~ 7670774 (+) False fam167b

Expression Profile