RNA id: XM_007258903.3


Basic Information

Item Value
RNA id XM_007258903.3
length 1344
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC103042329
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4380307 ~ 4387505 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTCTCTTGTGTTTTATCAGagtgtttatattaatttagtCGTACCCGTGGTGCGCAGTAACAGGGGATGAGCTAGGGCGCTGAAGGCGACATTAGTTTAACCTCGCTGATCCTCAGACCCACCTTTAATTTACCTGAAGCCGCTGCACTCAGCCCCACATGGACCACAATGCCGAGCAAACAGCCACGACGCCGAGGACATGCTGCAGCAGGTGTTCCTGACATAAGATCTGATCAGAGAGACCCAGTCACTGTGGACAGACTGGCATTCAAATACATGGAGATGTGTAAAGTGGATTCAACCTCAGACTCTGAGTCAGACACAAGCCCACGATGGTCCGACGCCAGCAGTAAGTCTTTCCAGGGAGGAACAGGTCTTAAGAGGCCTACTTTACCACAGAAGCCATTCGGACGGCACTATCAACAGACCCTGGACCCCTATGATGGAAGCTCAGAAGACTCTGCTTCCTCTGCAGATGGTGCAAAAAGACAGAAACGTGGAGGCATCAGAGTGAAGGGCAGAAGCTGCAGAATGGCTGCCAATCCTCTGCCCTCTCATGAAGTGCGGAGGCCAGGACTAAGAGATTCTGTACCTGTGATACAGTTTGGAGACATCCACATGAGGTCTTCCAGTGACTCAGAGCTGAAGGTCATTAGCCATAGGGACTTTCAGTATAGCCCCAGAAATTACACCAGTACCAGGATGGCAGACAATCACCCTCCCCTCCATTCTGCAGATCCATTTTGTACAGGGACATCAtttcagctcacagacagatTACTCAGCAGCCCCACTCACACTGGAGCACTTTCAAAAAGGAAGATGTTTTGCCCATTTGATGATGGCGGTGAATACATGCACAGGAAGAAGCAGTGCACCACGCAGATGGAGACCGAGTCTATTTTCTCATAGAAATAAAGCAGTGTGTTTCATCCAAGATCCTTCATTGGAACTCCACCTTTCTGACAATTCCTGCAGGCTCTTCTTTAGGACAGAGTAATTACAAAGTTACTGCAAGCAGGAGGATGTGCcctcaatgtgttttcttcacTGCAAAAGCTgcccatttatttattgtttatgatgATCTGACAGAttacagacctggcaacctttgtatatatttttgtgttttttcgtACTCCAAACACTTCTAAAAAACAAAGCTATTTAGTAAAACTTTACTCTGTACATTAAAAGAAATCATTGTATATGTGGTACAGGGCTATTTCATGATGGCATTTGAAGTTAGACTCCTcataatatgctttaaaaaaagtaaaaaaaaaaatgtgtatataattaAGTACATCAAAGAGCTTAATAAAGACTAATCCCAAAA

Function

GO:

id name namespace
GO:0006265 DNA topological change biological_process

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105341 lncRNA upstream 27030 4351453 ~ 4353277 (+) True G78122
TU105335 lncRNA upstream 59980 4318054 ~ 4320327 (+) True G78117
XR_002650303.1 lncRNA upstream 94076 4278111 ~ 4286231 (+) True LOC111193172
TU105273 lncRNA upstream 220990 4158517 ~ 4159317 (+) True G78066
TU105276 lncRNA upstream 222442 4154743 ~ 4157865 (+) True G78068
TU105402 lncRNA downstream 90361 4477866 ~ 4490654 (+) True G78172
TU105536 lncRNA downstream 817577 5205082 ~ 5207413 (+) True G78283
TU105535 lncRNA downstream 905250 5292755 ~ 5294206 (+) True G78282
TU105673 lncRNA downstream 2169728 6557233 ~ 6563936 (+) False G78397
TU105674 lncRNA downstream 2169993 6557498 ~ 6563936 (+) True G78397
XM_007258894.2 mRNA upstream 15503 4354756 ~ 4364804 (+) True mok
XM_007258895.3 mRNA upstream 15503 4355567 ~ 4364804 (+) False mok
XM_007258893.3 mRNA upstream 50802 4322554 ~ 4329505 (+) True klhdc2
XM_007258891.3 mRNA upstream 66519 4310317 ~ 4313788 (+) True dnaaf2
XM_007258890.3 mRNA upstream 71898 4298796 ~ 4308409 (+) True klhdc1
XM_007258897.3 mRNA downstream 78859 4466364 ~ 4486907 (+) True LOC103040906
XM_007258899.3 mRNA downstream 78868 4466373 ~ 4486907 (+) False LOC103040906
XM_022672463.1 mRNA downstream 186771 4574276 ~ 4590198 (+) True begain
XM_007258905.3 mRNA downstream 214436 4601941 ~ 4609185 (+) False wars
XM_007258906.3 mRNA downstream 214566 4602071 ~ 4609185 (+) True wars
TU105324 other upstream 82123 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 960308 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 963396 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 964067 3416168 ~ 3416240 (+) True trnav-aac_2
TU104828 other upstream 1402213 2900134 ~ 2978094 (+) False G77722
TU105595 other downstream 1064610 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 2469904 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 3207202 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 3268824 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 3268824 7656329 ~ 7729001 (+) False fam167b

Expression Profile