RNA id: XM_007258935.3


Basic Information

Item Value
RNA id XM_007258935.3
length 3422
RNA type mRNA
GC content 0.52
exon number 21
gene id kdm1a
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 5179637 ~ 5202441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgttccCCAGCCACTGCCCGGCGCACGCACTGCTCCGTGGTTCCTTTGTGCCGGACGGTAGCAGaagagGAGAGGCCACTGTCTTCCTCCATTATGCTGGCGAATAAGAAAGACTCCGccccctcctcctcatcctcctcctcctctggagGTAACGGTGTTGAACGCTCATTGGACGCTCCAGCCGGCCCGGCCCCTGGCCCTGCTGGTCCCGCTCCAGGCCCTGCCGACGTCAAAAAGAAGGAGAGGGCATCTCCGAGTGGCGAGGGTGGCGGCCCGCCCCTCCCGCACCCTCCCGGTCCAGGGGGCATCGACCAGGACTCTGCTGAAGGGCGACGGACCAGCCGCCGGAAGCGAGCCAAAGTGGAGTACAGAGAGATGGACGAGAGCCTGGCTAACCTGTCGGAGGACGAGTATTActcagaggaggagaggaacgCTAAAGCAGAAAAAGAGCGCAAACAGGTGGTGCCCCCACCCGCCCCTccagtggaggaggagaacgaCAGCGAGCCAGACGAGCCGTCAGGTTTGGAGGGCGCAGCTTTCCAGAGCCGCCTTCCACACGATCGAATGACGTCCCAGGAAGCTGCGTGTTTCCCTGACATTATTAATGGACCACAACAAACGCAGAAGGTTTTCCTGTACATCCGGAACCGCACACTCCAGCTGTGGTTGGATAACCCAAAAGTCCAGCTCACCTTCGAGTCTACTGTTCAGCAGCTGGAGGCTCCATACAACAGTGATGCCGTTCTGGTGCACAGAATTCACAGTTACCTGGAGAGACACGGCCTTATCAACTTCGGAATCTACAAACGCGTCAAACCACTACCCAgcaAGAAAACAGGGAAGGTGATTGTGATTGGTGGGGGTGTGTCAGGTTTGGCGGCGGCGAGGCAGCTGCAGAGTTTCGGCATGGATGTCACAGTGCTGGAGGCCAGGGACCGTGTGGGAGGAAGAGTGGCCACTTTCCGTAAAGGGAACTATGTAGCAGACCTGGGGGCAATGGTGGTGACTGGCCTGGgtgGGAACCCCATGGCTGTGGTCAGTAAGCAAGTCAATATGGAGTTGgccaaaatcaaacaaaagtgTCCGCTATATGAGGCTAATGGCCAGGCTggaGAACGCTGCACAAGTgttcCTAAGGAGAAGGACGAGATGGTGGAGCAGGAGTTTAACAGACTGCTGGAGGCCACGTCGTTCCTCAGTCACCAGCTGGACTTCAACTTCCTCAATAACAAACCTGTTTCTCTGGGTCAGGCACTGGAGGTCGTCATACAgctcCAGGAAAAGCATGTGAAAGATGAACAGATAGAGCACTGGAAGAAGATAGTAAAGACCCAGGAGGAGCTCAAAGAGCTGCTTAATAAGaTGGTTGCCACTAAAGAGAAGGTGAAGGAGCTTCACCAGCAGTATAAAGAGGCCAGTGAGGTGAAACCTCCCAGAGATATCACTGCAGAGTTTctagttaaaagtaaacatCGGGATCTCACAGCTCTCTGCAAGGATTATGATGCGCTGGCTGAGCAGCAGGCTAAACTGGAAGAGAGGCTACAGGAGCTTGAAGCAAATCCACCCAGtgatGTGTATCTGTCGTCTAGAGATCGGCAGATACTGGACTGGCACTTTGCTAATCTGGAGTTTGCTAATGCCACACCCCTCTCTACTCTCTCCCTCAAACACTGGGATCAGgatgaTGATTTTGAGTTCACAGGAAGTCACCTGACTGTGCGAAACGGTTACTCCTGCGTTCCTGTGGCTCTGGCTGAGGGTTTGGACATTAAACTCAACACGGCTGTCCGGCAGGTGCGCTACACCTCATCAGgctgtgAGGTAATAGCGGTGAACACTCGCTCCACCACTCAGACGTTTATTTATAAGTGTGATGCGGTGTTGTGCACCCTGCCGCTGGGGGTGATGAAGCAGCAGCCGCCTGCCGTGCAGTTCGTCCCACCACTGCCCGAGTGGAAAACATCCGCCATCCAGAGGATGGGCTTTGGAAACCTCaacaagGTGGTGCTGTGTTTTGACCGTGTGTTCTGGGACCCCAGTGTGAATCTGTTCGGCCATGTTGGGAGCACCACTGCCAGCCGCGGGGAACTGTTTCTGTTCTGGAACCTTTACAAAGCCCCCATCCTGCTGGCCCTGATGGCTGGAGAAGCGGCGGGCATTATGGAGAACATTAGCGATGACGTCATTGTGGGCCGTTGCCTAGCGATTCTGAAGGGCATCTTTGGCAGCAGTGCAGTTCCTCAGCCGAAGGAGACGGTGGTGACGCGCTGGCGTGCGGACCCCTGGGCTCGAGGCTCGTACTCGTACGTGGCAGCCGGCTCCTCCGGAAACGACTATGACCTGATGGCCCAGCCCATCACACCTGGACCAGCTATACCTGGAGCATCACAGCCGGTGCCGCGTCTCTTCTTCGCCGGAGAACACACGATCCGGAACTATCCAGCTACAGTACACGGAGCCCTGCTGAGCGGCCTGAGGGAAGCCGGACGCATCGCTGACCAGTTCCTGGGAGCCATGTACACACTGCCTAgacaaaacacaaatacagcCAACGCACAGCCCTCACCCAgcgtttaaacacacacacacacacacacacactccaacctGCAATCATGAACTACCGTGAAGAGCAGGTGTGTTTACCTGGACGCTCCAGCTCAGTTTATCTGCTTAAACACACTGAACCTTCAGTCAGGTGTGTTTGAACAGGTAAAGCACTGTGCTGGAATATGACtggacacacatatatacacacacacacacacacaccacacacacacatatatatacacacacacacacactcttacagaTTGTATAGCTCATACACAGtaacatttaatttacatatttacaaacttgaaaacactgtgtaactgtacactgtacacacacactataatacacacagtacacatgAGTATTGTACAgttgctgtttgtgtgtgtgtgtgtaggggggtgCCCACAGTGCCCACCCCCCCAAAACCGATGACACACTTCTTCTCCACTACTCTGTGTACAGCAGTGCTCTcagactcctcctcctccatatAGTATAAACTCACAGCTCTGAACTCTGATTAAAACCCAGCTGTGGCTGAGGTGGAGAAGTGAGGCTGAGAGGAACAGAGGTGTGGTAGATTACCCCGTCAGTGTGAGCTCTGAATTCTGCTGATCtccacttttttcttttgttgttcacCTCTAGATGAGTTTAGCTGAAGATGGAGAAACAGTAGCTGCTTaagtaaagcttttttttttttttttggaaatatgaAAAGTGTCGTTTTGCATTAagctaaatgtgttttttgttctgtagctttattttatatcattCTTATTTTTGTcaagtttttatattttgtggGAATTTGGTATTAAATGGAGACAAGAAGACTA

Function

GO:

id name namespace
GO:0034720 histone H3-K4 demethylation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105402 lncRNA upstream 688983 4477866 ~ 4490654 (+) True G78172
TU105341 lncRNA upstream 826360 4351453 ~ 4353277 (+) True G78122
TU105335 lncRNA upstream 859310 4318054 ~ 4320327 (+) True G78117
XR_002650303.1 lncRNA upstream 893406 4278111 ~ 4286231 (+) True LOC111193172
TU105273 lncRNA upstream 1020320 4158517 ~ 4159317 (+) True G78066
TU105536 lncRNA downstream 2641 5205082 ~ 5207413 (+) True G78283
TU105535 lncRNA downstream 90314 5292755 ~ 5294206 (+) True G78282
TU105673 lncRNA downstream 1354792 6557233 ~ 6563936 (+) False G78397
TU105674 lncRNA downstream 1355057 6557498 ~ 6563936 (+) True G78397
TU105686 lncRNA downstream 1422260 6624701 ~ 6627742 (+) True G78408
XM_007258912.3 mRNA upstream 519935 4650154 ~ 4659702 (+) True LOC103044998
XM_007258905.3 mRNA upstream 570452 4601941 ~ 4609185 (+) False wars
XM_007258906.3 mRNA upstream 570452 4602071 ~ 4609185 (+) True wars
XM_022672463.1 mRNA upstream 589439 4574276 ~ 4590198 (+) True begain
XM_007258897.3 mRNA upstream 692730 4466364 ~ 4486907 (+) True LOC103040906
XM_007258937.3 mRNA downstream 79573 5282014 ~ 5289766 (+) True ptafr
XM_022672634.1 mRNA downstream 142695 5345136 ~ 5440734 (+) True pacrg
XM_022672465.1 mRNA downstream 249925 5452366 ~ 5530055 (+) True LOC103025550
XM_022672635.1 mRNA downstream 1425552 6627993 ~ 6683113 (+) True mrps5
XM_022672636.1 mRNA downstream 1425565 6628006 ~ 6683113 (+) False mrps5
TU105324 other upstream 881453 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 1759638 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 1762726 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 1763397 3416168 ~ 3416240 (+) True trnav-aac_2
TU104828 other upstream 2201543 2900134 ~ 2978094 (+) False G77722
TU105595 other downstream 249674 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 1654968 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 2392266 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 2453888 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 2453888 7656329 ~ 7729001 (+) False fam167b

Expression Profile