RNA id: XM_022672825.1


Basic Information

Item Value
RNA id XM_022672825.1
length 1883
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC103022442
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16721225 ~ 16729066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTAAAGAGGATTATGGGATAAGATGTCTGTGAGGAACGACGTTCGGCCCGGCcgagagtctctctctctctctcggggaAACAGACGGGTCATGCCGTCTCTCCTCGCCGCCAGCTGCTCTGCTGAATCAGGATGAAGTGGACTCTGCTGTACCGGTACTGGTACTGGTTGCTGTATTGCCAGACGCTTCTCTGCAGCACCGACACCCAGGAATCCGACTATCAGGAATCGGATTCAAGTCAAACAGACTCTTCTCAGACAGACACGCATCTCATCAGCAGCGGCCTGATGCAGTGCGGGGAGTACAGTAACGAGGTGATGCCAAACGGGCAGTGCCGCCTGATGGCCACGCTGCCCCAGCTGGAGGAACAGCGCTGTCCTGACATGTTCCGCTGCACAGACGAGGTTTCCTACTGGCTACATGAGAACGAAGAGCGCAAACAGCAAATGCAAGACCTGAAGGAGACAATCTCAGAGCTTCAGGAGGAGCTGAGAAACCACAGACATCGCATCAAAGTTCTGGAGTTACAGAATGAAGAGAAGAATGGTCAGAATTCTTCACTGGAGCAGCGATTCCACGCCCTGGAACAGATCTATGAAGAAGCCAATACTCTGCTTCACGTCCACGGGTCTCTCATCTATGACATGCAGGCGCAGATCCGGAACCTCACCCTGGCCGTGGAGCGTGTTCGGCGTAACCCCGGCTGCATGATCAACATCGTCCGCACCAGCCCGCTGCTCAGCACCCGCGACACCCTGCACCCCGaGGTTCAGCACATACGGAACTGTCCAATCGACTGTGCCTCACTGTACTACAATGGAGTTCACCGATCTGGGATTTTTGCTGTAGTCCCATCATTAGGATCAACACCAGTGGAGGTCTACTGCGACATGGAGACTGATGGTGGTGGCTGGACCACTTTCCAGCGGCGACAAGATGGCAAGGTAAACTTTAATCGCAGGTGGACGGAGTACAAAGATGGTTTTGGAGATCTGCATGGTGAATTCTGGTTGGGGAATGATAACATTCATTACATTTCTAGTCAGGGTGATTACTGCTTACGCATCGACCTTGAGGACTGGAATGGCAAACACAAGCATGCTCTCTACCAAAACTTCAGGATTGAAGATGAGGAAAACCAATATCGTCTCCATATCTCTGGGTTTAGTGGGACGGTCGAGGACTCGTTTAGTTGGTACCATGACAAGCAGAGCTTCAGTACACCGGACACGGGCAATATCTGTGCTGAAATTTCTCATGGAGGATGGTGGTACCATCAGTGCTTCTTCACTAACCTGAATGGCATTTATTATAAAGGGGGGCGCTACTCTGCTAAAGGGAAGAACCTGCTGGGTCCTGATGGGATTGTGTGGTACACCTGGAAAGATTCAGATTACTACTCACTAAAGAAAGTCAGCATGATGATCCGCCCACGGACCTTCAAGCCCCGCCTTTCACCATGACAACTGATGCAATTTACCACAATATTAGAAACAAGTTCAATAGAGAGTTTCCAACTTTTATGTTGGAACTTCCTGTCCTGGCCCACTATGGAATCCCACTGAACATTTAACATCTGATGATTGCAGATATCAACTCCTTATCTGTAGAAAATATCATTAATACAATTATCAATTCCTATTTTAATACACATATGTATATAGTTGTAAATCGTATTGAATAATTATGGTAAAATAGTCACTGGACCTTATTCAGTGCTCGGTACATCATATACTGTGTATATCTACTGCTCAGTTTTACTGTTAGTCATAAATAACCGTATTAatttcaacaaaataaaaaacatttgaatgttGAATTAATgtcaaaattgtttttttactgctttGATAATGTGTGAATGGaaaaccaataaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109405 lncRNA upstream 1790 16716995 ~ 16719435 (+) True G81190
TU109287 lncRNA upstream 39293 16678648 ~ 16681932 (+) True G81124
TU109267 lncRNA upstream 99803 16619583 ~ 16621422 (+) True G81106
TU109262 lncRNA upstream 103101 16617687 ~ 16618124 (+) True G81105
TU109260 lncRNA upstream 105077 16615202 ~ 16616148 (+) True G81103
TU109415 lncRNA downstream 754 16729820 ~ 16730174 (+) True G81197
TU109443 lncRNA downstream 111158 16840224 ~ 16845728 (+) True G81220
TU109449 lncRNA downstream 135045 16864111 ~ 16864542 (+) True G81224
TU109471 lncRNA downstream 250351 16979417 ~ 16982929 (+) True G81243
TU109534 lncRNA downstream 301997 17031063 ~ 17031359 (+) True G81282
XM_022672824.1 mRNA upstream 8184 16687918 ~ 16713041 (+) True LOC103021824
XM_007244673.3 mRNA upstream 112768 16594547 ~ 16608457 (+) True ect2l
XM_022672820.1 mRNA upstream 112768 16594552 ~ 16608457 (+) False ect2l
XM_022672819.1 mRNA upstream 112768 16594937 ~ 16608457 (+) False ect2l
XM_007244672.3 mRNA upstream 127652 16586187 ~ 16593573 (+) False ccdc28a
XM_022672828.1 mRNA downstream 31757 16760823 ~ 16767006 (+) False LOC103031040
XM_007239267.3 mRNA downstream 31759 16760825 ~ 16767006 (+) True LOC103031040
XM_015603055.2 mRNA downstream 31761 16760827 ~ 16767006 (+) False LOC103031040
XM_007239265.3 mRNA downstream 31764 16760830 ~ 16767006 (+) False LOC103031040
XM_022672829.1 mRNA downstream 53471 16782537 ~ 16838704 (+) True sh3yl1
TU108900 other upstream 1137894 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 1539827 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 1919388 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 1992426 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 2769027 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 1731064 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 1731064 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 1731064 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 1731064 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 1731064 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile