RNA id: XM_022673020.1


Basic Information

Item Value
RNA id XM_022673020.1
length 4635
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC103035024
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24830960 ~ 24846017 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAACGGTTGCTTTTATACTAACTGGTTGAAGGCAATGACATTCATTTAGTCACTCACCAGAGCGAGTTGAGGATGGAAACTCTCAAAACCACAAAGGCCACTtgagtttctgacactcacttTATATCTGATTCACACCACAGCCCAATAACACTCAATAACTTATACGTTATTCACCTTGTTCTAAATCCAGTGTTGGAACTTCTACTAAGAAGAATCTAATAATCtaatattcaaaaatatgttAGACTGTATACTGATCACTAAAAGCGGAGGGTATaagacattaaacattaaataattcatgCTGGACCCTAATAACTAAAATGCATATGACAAGCTTTCAAAACCTTATTGGTGGTTTGTTTACGGTATACAATAAGGCCTGTGAACATTGATGAACATatactttatctttttttcttttttcgaaGAAGGCTAGATAAAAAAAGTGGCAGGCCACTATGAAAACAGCTCATGTGACAGGAAATGATAAGATGGCGCATAGCTGAATTACATACATATTCTAGAGTGTGGGTGAGAGAGGAAGTCTCAGACTGAGTCATGGTGTGACTTTACTGAATGTGTTTAAGGGACCAGCATACAGCATTAAAGTTCATTTTGGACGTCCACAAAAGGATTTGTCTCTGTTTCAAGAATTTCTCCTCTTCTTTGATGTTGAAAAGTCTGGTCGGACCATTGTGATTTTCttttaacataaattaattcttatttttttgccaaaCCATCGACTGCTTAGAAAGTACAAGTTTGGTGGAAGACTCTTTGTGATTGGTGGGACAGTTTGTGCTCCTGTAGCAACAGAGGTCTACGGACATCAACATCAACCCTAAGAATAGTGCTAGAAGACTACACCTTCTGAAGAAATGTGGATATGGTCTACGGTGAGTCGTCATGGAATAACTCATTCATGATGAGCAGCATGTCAGCTGAACTCTGATTCCACAGCCAGCATTCCACAGTTACCCTAAACATGACTGGAAAAAGACTGTTTACTGTCCTATATCACCATCTTCCTAACTTTGTTGGTTCTGCTGTTCATTCAAATTAGCTAATTAGCAACCTAGAGTAATATATTAACACACAGTAAAGAAGAAGCTCTGATTACTGTAATTCTTTCCAAAATGACAGAGAACCTCTATGACAGTAATGGAGCCTATTCATTTCAGAACAGTCTATCAGCATCGCCTGCTTATGGTTTCCCTACTGCAAGCTCATTACAAACTTGTCCATTGTCTCCACATGTTAACCAAAAGCATACATTATCACCTGCCACGCCACAGAATGAGCCTTCTCTACTATTTGACATACAACACAGTGGAGGATGCTGGGATTATAATCCACTGGAGAAGTCTGCATCTAGTTTGTGGGGCTCCTCATCTAAAGATGAAGTGACAGAGGCAATGGGTTCCCATTTTGTCTACCCCTTCAGTGTCAtccctcacagcaatgctggaCTGTCTAGCAAGTTTAATGCCAGTGCTCTGCAAAGGCTAGATTCCTTTTCCAAAGCCTTTTCCATGAAAATCCCAAACATGGCTTTTGTCAACAGTGTAGGTGAAAAAGGCTTGGAGGACACTCAAGTACCAGAGATTTTGCTCTCACCTCAAAGTGCAACACCCTCGGATGGGTCAGATCGAGAGCCATTTAGTCCAGTAGCCATGCAGAGTCAGCAAGGCCATAACAAACAATCATATCCTCCAATAAACAGCCAACATATGACTGACAACCTCTACCAAAACCATCAGCAATATCATTATGGATATCAGCAGAACAAACAACAGCTCAGGGAAAGCCAACCAGAGCAGGTATACAAGTTACCCCCTTACAAGTCCCAGAACCTGTATCCTTTCCAGCACCAAGGGATCCAAACCAGCCAAAATCAGCTCACAAATTATTCATTAACCCCACAAAAGCAAGAGCAGAGAGGGCACTACATTCAGCAATCTCCACTCGAAGGCCCACAGTCTGCAGGATCACCAACCTTTGGCTACCCCGAGGACTATAAAGCACCTGAACAACCAGCTTTCCAAATTGGTCAAGGATTGCCACTGCAGTCTCCTCACTTCAAGGAACCACAGCACTTTCATCCATTCCCCAACCAGAGTGAAATGTACCAGCACCAGCAACATCACGAGCAAGCACACCCAGCACACTTACTGTCTTTCAAGCAAAATGCCTCTTTTGGAGACAACCCCCTGGCATCACTCAACACCATGCCTGGATTTCCTGGTCTGAAAGAGGAGGCCTGTATGGATTTACATCATCCTGAAAAAAGGAAGGGTCTCTGCAGCTCCCATTATCAAAGCGCTGGGTCAGGGGTCAATCAGACAGCAGCTCAGTCAGCAGCTCTGAGGGGAGGAGTGCTTCATCACATCAATTCCTACAGACAGCAGTGGACACAGATTCACTCACCTGATATTCCAGATGACCAGATTTCAACTGTCTACAGGAAGGAAATGGGGATGGTGAGGGACAAAGGGTCCAGTACCAAGCTGAAGTGCATCGTCTGTCAAAGAGAGTTTAAAAGTTTGCCAGCCCTTAATGGCCACATGCGTTCCCATGGGGGATTCAGGACACATCCAACAGCCTTCAAAACTAGTGATGGCCAAATTCAGCTTGACCCCATGGTGTTACCTGTATCTGTTCCTGTAAAGGATTACCAAACTCCCTCCAAGCTGCCAAATTCCCTTCATCACCCAAGACAAAGAGATCTTATTGACACAGTTAAGGCTTGTTCACCGCAACCAGGCCCTACACCAAAGAATTCACAGTCATTATGTGTGAACAGTACTGCAGGTGTGGGAGAAAATACGGAAAAGCAAGTGAAAAAAAGGTACCGCCACTACCTGGTGCCTCTTGTAATTTCGCCACATAAGGCTGGCCTGGAGTCCAGAGGACCAGTGCTTTTTAAAAGCCAACTGCGTTCTCCAGGAAGCTGTGGAGATAATGTTCCCTACACTCCTCCACCCATGCTCAGCCCTGTCCGTCCAGGCTCCGGTCTCTtcagcagttttcatgcaggGTCTCActgcactggaacacagaacgTCCAACGAGTTCATCTCTGCAAGGACAGTGATGTGGATAACAGTATTACCACGCTGGATGCAGAAGACAAATCAAGCAGCATGAAACCGCGGATCAATATTGGTCTAGATTTTCAAGCAGAGCTCCCAGATATTCAGAGCCACTCTAAAGTAGCAGATGATGTCCATAAAGCTACTTTACTCTGGACACCATACCACCTGGATAACCCAGACAACCAGCAAAGAGTGGACGATCTTCTGAAAATGGCCTGCTCCAGTGCGCTGCCAGGAGGAGGGACTAACACAGAATATGCCCTCCATTGTTTCTTCGAGTGTAGAGGAGATGTTATGATAACGCTTGAGAAACTTCTCTCCATGAACCCTTTGAAATGCACATCCACCCTTCAAACAAACTACCACTATGCAGGATCAGATAAATGGACCCTGCAAGAGAAGAGGCAACTAAACAAGGGCCTGGTCCTTTACAACAAGGATTTTCACTTCATTCAAAAAATGGTAAAGACAAAGTCAGTTTCTCAGTGTGTTGAATACTACTGCACATGGAAGGAGAGACTCCGACTGGGCAAGAAACTCAGCTCAGGCCCTGCAACACCAGGTCCAGAGAAAGAGGGTGAATTAAAGAGAAGCAATACAAAACTACTGAACCATGTCGCCAAGAACCAGACCAAAGGCCTGGAGTTCTCTGACCTTTCTGACAAATCCTGTGCTGCGGTTGTCTGTGATTTACCAAGCAGTGGGCCTatgttcaCTGACGATGACTGGAACCAGATCAGTCTTAGTGGACTGAATACTCCACTGGCTGAATACTCCAGACCAAAATCAGCTCAGCAGTTAGTTAGCGGTTCTGTGAAAAGCTCTCCATCAAACAGTACCACCAGTGGAGAAACTGACTCAACTCTCATTTTcccctgcactgaatgtggaaaAGTGTTTTTTAAGGTCAAGAGTCGCAATGCCCACATGAAGACCCACAGACAGCAAGACGATCCACAGTTCTGGCAGCTTCATGCATTTCCTGAACAGGAAAACCAGACTGTCACACCTGTCAACCCTTCTGTTACACCACTTCAGCTACCCACAACTCCTCAGTCTTTACCCTGCAGCAGAGGAGAAGATGAGAAATCTCTGACCAATAATGATGCAGAAACGCAACAACAAGCACAGTGCATCTTGAAGAGGcagaattttaaaaagtgatttcacAAACATTGCTGAACTTGCTAGAACTGGGTGGTgcttgattatttaaaaaaaatgtcatgttttttttaattaggcaATGTGGAATGAAACgatatgcaataaaaatgtgaaaggCTGTAAACGATGAACTGTAAAAATGATGTAGAACGATCTGATGCCATGAAATACAGCTAATGACAAAATGTTGCACttgctttgttttaatcattacAATGCCATTGTAaagttgttttattaaactgttaAAAGTAACTCAAAGTGGTAAATATTAGGACAATGAAATACACTATATGCCCTGTGAAATTGAATCGCCTTACatattcaattaaaatattactacAGACATTGGGATGGTtaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112211 lncRNA downstream 17151 24813347 ~ 24813809 (-) True G83279
TU112188 lncRNA downstream 58218 24771882 ~ 24772742 (-) True G83260
TU112183 lncRNA downstream 59917 24765935 ~ 24771043 (-) True G83259
TU112185 lncRNA downstream 61650 24765935 ~ 24769310 (-) False G83259
TU112153 lncRNA downstream 66639 24763896 ~ 24764321 (-) True G83236
TU112236 lncRNA upstream 32898 24874256 ~ 24875186 (-) True G83291
TU112239 lncRNA upstream 41349 24882707 ~ 24882844 (-) True G83294
TU112251 lncRNA upstream 54538 24895896 ~ 24896616 (-) True G83300
TU112266 lncRNA upstream 90560 24931918 ~ 24932189 (-) True G83309
TU112270 lncRNA upstream 92819 24934177 ~ 24934642 (-) True G83313
XM_015606496.2 mRNA downstream 2235 24826165 ~ 24828725 (-) False LOC103035756
XM_007252019.3 mRNA downstream 2237 24826165 ~ 24828723 (-) False LOC103035756
XM_022673021.1 mRNA downstream 3243 24826165 ~ 24827717 (-) False LOC103035756
XM_007252018.3 mRNA downstream 3468 24826165 ~ 24827492 (-) True LOC103035756
XM_007252010.3 mRNA downstream 33761 24794749 ~ 24797199 (-) False LOC103033209
XM_007252026.3 mRNA upstream 41547 24882905 ~ 24891194 (-) True LOC103037621
XM_022673026.1 mRNA upstream 98680 24940038 ~ 24954966 (-) False LOC107197685
XM_022673025.1 mRNA upstream 98680 24940038 ~ 24954966 (-) False LOC107197685
XM_022673024.1 mRNA upstream 98680 24940038 ~ 24954966 (-) False LOC107197685
XM_022673023.1 mRNA upstream 98680 24940038 ~ 24954966 (-) False LOC107197685
XR_002650359.1 other downstream 195079 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 813304 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2206251 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2752099 21946740 ~ 22078861 (-) True LOC103042297
TU112362 other upstream 195877 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1151141 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1593114 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 2993424 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3503231 28344589 ~ 28356545 (-) True G84215

Expression Profile