RNA id: XM_015606503.2


Basic Information

Item Value
RNA id XM_015606503.2
length 2290
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC103045057
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24317310 ~ 24336229 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTTTTTCCTCTTTCTGTAATCTCTCTTCAGGACATTCAGGCAGAAATTGACGCCTACAGTGATCCCTACAGAAGGGGGTCCAGGGATCAAGTACTGGGTGTCAAGTTAATAGGCATTGAGAATGGGGATATGGACTCAAATGGTCAGAGTACTGCCTTTACAAACAgGGAGCGTGTGGAGTTTCACAGGGAGAGATGGGCCGGACTGATAGTGCTTCTGGAGGAATTATGGTCCTGGCTGAAGATGATGGATGAGGAGCTGACCAGACAGCTTCCCATTGGAGAGGATGTTCGTACTCTTCTGCAGCAACAAGGATACTGTATGGCTCTGCAGAGTGAGTTAACCAGTCGGAGGCAGGTATTTGACCACACTCTGAAGCAGCTGTGCCTGTGCCTGGCTCTGCAGCCTGCAGATGGGCTGTGTGAAATCAGCAGGGAAACAGCAGCAGAACACGCTGTACCGGAGAGGGGTATGTGCCTGGACCGAGTCATGCAGGATCAGGCCCTGGAGGTCCAGCAGCACTGGGAACGGTTCCGTGCTCATGCAGACAGTTGGCAGCAGCAGGTCAGCTGGGCTTTGGAGAAGCTTCAGGACCTGCAGGACTCCATACATCAGGAGCAGTCTGGTTTGATGGAGATGAAGATCATTGGGCAAAGGTGGCACTCAGATGGGCACCCTCTGGTTAGCTGTGAACTGGACGGTATTGAGGAGACCACTAGCTTCAATGAAGGAACAGTAGAACTTCACCTGAGTGCGACAGATGTCAGTGTCAGTTTGGTTCCACCCCCTGACATCCAGCTTGCTCCAATCTCATCAGCATCACCTCTCAGCCCCGGTACACAAATGAAGATTTCAGAGGGGGCAGTGATGAATCATCACAGACAGCACCTCCTAGATGCTCAAGATGATAACAGACCACTCTCCCAGGACTTCTTATCTGcttctgtccagtctccatgGCAGAGAGCGGTCTTGCATAATGGCGTCCCTTACTACATTAATCACGAATGGCAGACTACATCATGGGATCATCCACAAATGACTCAGCTTTTTCAATCAATGGCTGATCTGGAACATGTGCGCTTCTCTGCTTACCGAACCGCTATGAAGAGCCGCAGAGTGCAGAAAGCCTTGTGTTTGGACCTTTTGGAGCTGGCCATGGCTCAGGGAGTCTTTGATCAACATCAGCTATCTCATAATGGACATCTTTTGGAGGTTCCAGGCATCATAAGATGTTTATTTACAATCTACACTGAGCTTCAGCAGGTGCATCCAGATATGATCAACATGCCCCTGTGTGTGGACTTGTGTCTCAACTGGCTTCTGAATGTCTATGACAGGGATAGAAGCGGAAAGGTTCAGGTCCTGAGCATGAAGATTGGCTTGCTTTCTCTTTCAAAAGGACACCTTGaggataaatataaatATCTGTTTAATCAGGTGGCTGGCTCTGCAGGAGTGTGTAACTCCAGGCAGCTAGCCCTGCTACTGCAGACCACCATACAAATCCCCCACCAGCTGGGTGAGGCTGCTGCTTTTGGAGGGAGCAACGTGGAACCCAGCGTCCGCAGCTGCTTTCAGCATGTTGGGAGTAAGGAGGCGATTGAGCTGGACCAGTTTGTAGAATGGATGCACCTGGAGCCCCAGTCGATGGTATGGTTACCAGTGCTACACAGAGTTGCTGCAGGAGAGACTGCCAAACACCAGGCCAAATGCAACATCTGTAAAGAAAGCCCTATGATTGGCTTTAGgTATCGCAGTCTGAAACATTTTAACTATGATGTGTGTCAGAGGTGTTTTTTCTCTGGAAGAACCAGCAAGGGTCACAAGCTAAACTATCCTATGGTGGAATACTGCACCCCGACAACCTCTGGGGAAGATGTGCGTGACTTCACCAAGGTGCTGAAAAACAAGTTTCGGTCAAAGAAGTACTTCACCAAACATCCTCGCCTTGGATATTTGCCAGTCCAGGCCATTCTAGAAAGTGATCTAGACTTCCCAGTCACACTCCTGAGCATGTGCCCAGAGCACTATGAGTCCATATGCGTGCAGCAGACCAGTTCCTAGGCAGTGGAAGCAGTGGACAAGAAGGAACAGGCACTATCCATCTGTCTGGCCTCTCTGGAGTAAGAAACAAGCAGCTAGCTGGTCACTGCCTCGAAATTACTCCCTGACTGCAGCTCTCTCCTACTTTTTTTCTGCTGGCAAGAAAAACCATATACCCAATTGTGGACAGAAGGctataatttactgtaaataaaactgtacatCTGTTGACTGCGAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111920 lncRNA upstream 2345 24314715 ~ 24314965 (+) True G83064
TU111624 lncRNA upstream 178406 24136576 ~ 24138904 (+) True G82838
TU111583 lncRNA upstream 343335 23909682 ~ 23973975 (+) False G82811
TU111585 lncRNA upstream 394450 23922348 ~ 23922860 (+) False G82811
TU111590 lncRNA upstream 401851 23913129 ~ 23915459 (+) True G82816
TU111934 lncRNA downstream 13212 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 13300 24349529 ~ 24350535 (+) False G83071
XR_002650357.1 lncRNA downstream 20746 24356975 ~ 24367973 (+) True LOC111193226
XR_002650358.1 lncRNA downstream 236099 24572328 ~ 24576551 (+) True LOC111193227
TU111994 lncRNA downstream 283466 24619695 ~ 24619937 (+) True G83116
XM_007251961.3 mRNA upstream 14544 24299171 ~ 24302766 (+) True stx11
XM_007251958.3 mRNA upstream 42202 24271342 ~ 24275108 (+) True LOC103045657
XM_022672985.1 mRNA upstream 47444 24264445 ~ 24269866 (+) False rmnd1
XM_007251957.3 mRNA upstream 47444 24265734 ~ 24269866 (+) True rmnd1
XM_022672982.1 mRNA upstream 60060 24167119 ~ 24257250 (+) True syne1
XM_007251966.3 mRNA downstream 47649 24383878 ~ 24403591 (+) True LOC103047809
XM_022672987.1 mRNA downstream 67461 24403690 ~ 24407033 (+) True LOC111193225
XM_022672988.1 mRNA downstream 81780 24418009 ~ 24458899 (+) True LOC103021971
XM_022672989.1 mRNA downstream 81780 24418009 ~ 24458899 (+) False LOC103021971
XM_015606532.2 mRNA downstream 81780 24418009 ~ 24458899 (+) False LOC103021971
trnal-uaa_4 other upstream 6815 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 8420 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 9877 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 10617 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 175078 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 491445 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 598844 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 693808 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1583328 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1899269 26235498 ~ 26249096 (+) False G83602

Expression Profile