RNA id: XM_015606544.2


Basic Information

Item Value
RNA id XM_015606544.2
length 1990
RNA type mRNA
GC content 0.43
exon number 7
gene id fuca2
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24765981 ~ 24771053 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTTGGCAACCTATCAGGTACAGTTTGGTTAAGGAGGAAGTTCAGCAttgttggtttttttttggatagtCACATGAGCTAGTTTCAGGTGATATATCGTGTGATCTGCACAGGGTTTAACCACTGGAGAGCTTTCCTCACTCTAGAGCGGGCGAGTGCAGAAACATGGGGGCTGGAAACCTGTGTGTTCTCTCCCTGTTTCTGTTGATGGGAAGCTGCCTCTGTCAGTATCAACCTAACTGGGACTCCATAGATTCCAGACCTGTGCCTGAATGGTTTGATCAGGCCAAGCTTGGGATCTTTATACACTGGGGTGTGTTTTCTGTCCCCAGCTACGGAAGCGAGTGGTTCTGGTGGTATTGGCAAGGCCGGAAAATACCTGACTATGTGTcatttatgacaaaaaacttTGCCCCTGGATTCCAGTATCAAGACTTTGCACCAAAGTTTACCGCTGAGTTCTTTGATCCGAAGCAGTGGATGGACATCTTTTCAGCATCAGGAGCAAAGTATATCGTCCTCACATCTAAACATCATGAAGGTTACACCCTTTGGGGCTCAAAGTACTCATGGAACTGGAATGCAGTGGATGTTGGACCAAAGCGAGATCTGGTGGATGAGATAGCTACCGCCCTGCGGAAGAACACTGACTTACGCCTTGGGCTCTACCACTCTCAGTTTGAGTGGTTTCACCCTCTTTTCAGAGCAGATGCTGCCAATAATTTCAAAACCAATGTTTTCGCAACTGAGAAGTCCCTGCCTGAGCTTtatgaactaataaataaatacaaacctGAACTACTGTGGtctgatggagatggagatgccCCTGACCAATACTGGAACAGTACTGGGTTCCTAGCATGGCTGTACAATGAGAGCCCTGTTCGTGAGACAATTGTAACTAATGATCGGTGGGGAAAGGGTAGTATTTGTACACACGGTGGATATTACACCTGCACTGATCGGTACAGCCCTGGACATCTGCTGAAGCACAAGTGGGAGAGCTGCATGTCCATTGACAAGCGTTCTTGGGGCTTTAGAAGAGAAGCTGCACTCAGTGACTACCTTACTATTGAGGAGCTGCTTAAGAGCTTTATAGAGACCGTGTCATGTGGGGGGAACCTGCTGATGAATGTGGGTCCAACACACGATGGTCGCATCGTTCCTGTATTTGAGGAGAGACTTCGACAGATGGGACAGTGGCTGAAGGTCAATGGAGAAGGAATCTACAATACCACTGCATGGAGAGTTCAGAATGATAGCGTCACACCTGgagtctgGTATACATCGAAGCCACAGGATAAGGCAGTCTATGCGTTCTTGCTTTCATGGCCAGATAAAGGATCTGTTGTTCTGGCCGATCCTATTGTGTCAGCTAGTACACAGGTGGTGTTGGTGGGCAATAAACCATTGAAGTTTGACGTGCTAAAACCCACTGGTCTGCAGGTTTACCTGCCCACTCTGACCCCTAATGAGATGCCTTGCTCCTGGGCCTGGACCCTACGACTGACTGGTATAGCTTAGTCACATAGTTTAGGACGCTTTTTAACAGTTAAATTCCCAGgagatcattttttttagattaatcgTGTGGTAATAAGGGTAcatataaatctttttttttattctgtgagtatatgaaatctgtttttgatttgttttatttttgcacaaagATTTTATGATAATCTTGAAGGTTTCTTTCTActtacattgtattttataaaatgctGTAGGTTTCAGTTTGTCAGAGTTTATGCAGGGAgctaattaatgattttatatTGGCCATTCTATTtgcactgtttttctttttttgggatGATGTAAAGGGAAATGTAGCTTCATTTTAAATGAGATGTGTATCTAACAGAGTAAATGTGacttatgttttttaaaaaggaaaattcTGAATACTTGAAAAttgcctttttttaaagcattgcaCTTAATTTACACCAAATAAAATGGGAAACGTTctttaaa

Function

GO:

id name namespace
GO:0006004 fucose metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0004560 alpha-L-fucosidase activity molecular_function
GO:0042806 fucose binding molecular_function

KEGG:

id description
K01206 FUCA; alpha-L-fucosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112004 lncRNA upstream 123326 24642392 ~ 24642655 (+) True G83123
TU112002 lncRNA upstream 129099 24636606 ~ 24636882 (+) True G83121
TU111998 lncRNA upstream 130783 24630873 ~ 24635198 (+) True G83120
TU111994 lncRNA upstream 146044 24619695 ~ 24619937 (+) True G83116
XR_002650358.1 lncRNA upstream 189430 24572328 ~ 24576551 (+) True LOC111193227
TU112060 lncRNA downstream 829 24771882 ~ 24772793 (+) True G83167
TU112074 lncRNA downstream 67477 24838530 ~ 24840128 (+) True G83180
TU112240 lncRNA downstream 122190 24893243 ~ 24893639 (+) True G83295
TU112242 lncRNA downstream 147372 24918425 ~ 24924815 (+) False ephx2
TU112264 lncRNA downstream 160866 24931919 ~ 24932539 (+) True G83307
XM_022673010.1 mRNA upstream 18176 24742969 ~ 24747805 (+) True LOC103045971
XM_007251998.3 mRNA upstream 23184 24737013 ~ 24742797 (+) True LOC103030357
XM_007251999.3 mRNA upstream 23184 24737020 ~ 24742797 (+) False LOC103030357
XM_007251997.3 mRNA upstream 29604 24732177 ~ 24736377 (+) True tp53i3
XM_007251994.3 mRNA upstream 35963 24726218 ~ 24730018 (+) True LOC103029186
XM_007252008.3 mRNA downstream 1753 24772806 ~ 24793331 (+) True LOC103032669
XM_007252007.3 mRNA downstream 9615 24780668 ~ 24793331 (+) False LOC103032669
XM_022673015.1 mRNA downstream 9615 24780668 ~ 24793331 (+) False LOC103032669
XM_007252013.3 mRNA downstream 27979 24799032 ~ 24805385 (+) True LOC103034484
XM_007252014.3 mRNA downstream 27992 24799045 ~ 24805385 (+) False LOC103034484
trnal-uaa_4 other upstream 455486 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 457091 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 458548 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 459288 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 623749 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 56621 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 164020 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 258984 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1148504 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1464445 26235498 ~ 26249096 (+) False G83602

Expression Profile