RNA id: XM_022672873.1


Basic Information

Item Value
RNA id XM_022672873.1
length 2858
RNA type mRNA
GC content 0.45
exon number 20
gene id msh4
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18750693 ~ 18764580 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCCTCTGGTTCCCCATGGCCAATAAGTGGTGCCCACAGCTCCAGCAGTCTGACTGTGAGGACTCCTGGATCAGCAGGGTGCACAAATGCTGGACGACTACCTCAGAGGGATCTTAGCAGGCAGAGGTTTAGCCCGAGGAGAGATTGGCCTGTCCAGCATCAACATGAAATCCCCTGAGCTGGTTCTCTCTCAGTTTGCAGACACTGGGACATATGCAAAGGTTATTACCAAACTCCATATATTGATGCCACTTGAGATTCTAATGCCCGACACTGCTAGTGAGAAAGGCCAGGGGACCAAGCTGTTCAATCTCATCACAGAAAATGTTCCGTCGGTATCTTTCACTGCCATTCAGAGGAAGTACTTTAACGAGAGGAAAGGGCTAGAGTACATCCAGCAGCTTTGTGCCCCTGAGTTCAGCACTGTTCTTATGGAAGTACAAACCAAGTACTACTGCCTTGCATCTGCAGCTGCCCTTCTTAAGTACGTTGAATTTATTCAGAACTCTGTCTATGCACCCAAGTCTCTTAAAGTGAGCTTCACTGGCAGTGAGCAGACTACTATGATTGACTCTGTCTCAGCCAAGAACCTGGAGCTAGTGATTAACAACAGGGACCAAAGGAGCGATCACACTCTGTTTGGTGTCTTGAACCACACCAAAACCCCTGGAGGTGGTAGAAGGCTTCGCTCCAACATTCTGGAACCTTTGCTAGATGTTGACACCATTAATACGCGCCTTGACGCCATACAGGAACTGTTGCAAGACGAGGAACTGTTTTTTGGTCTGAAGAGTGcaattacacaCTTCTTGGATGTAGATCAACTACTTTCTTCTCTTGTTCAAGTCCCCAAGCAAGAGACGGTGGCAGTGGCTGAGGCAAAGATATTGCAAGTCATTCAACTGAAGCATACTCTAGAACTGATTGCTCCACTGACGGAGGTGTTAAAGAACGCAAAAACAGCGTTGCTGAAAGCATATCACACTTCACTGGAAGATGGCAgGTTCAAGAGCATATTGGATGAGATCAAAACAGTAATCAATGATGACACCACCTCCCTGAAAGGCAGTCTGAACATGCGCACTCAGAAGTGCTATGCTGTGCGCCCTAATGTCAATGAATTCCTAGACATCGCACGGCGAGCCTACACTGAGGTAGTGGACGACATTGcagGATTGGTAGATCAGCTGGGAGAGAAGTATGGCCTGCCCCTGCGCACCATTTTTAGTACTGCTCGTGGCTTCTTTATCCAGCTAAGCTTGGAGGGTGTGGTCTTGCCTGAAGGACATCTTCCCGAAGAGTTCATTAAAGTAACCAGACAGAAAAACAACTACAGCTTCACCACTTTAGACCTGATGAAGATGAATTCTCGCTGTGAGGAGGCCCTGAAGGAGATATTTCACATGTCTTATATGGTGATTTGCCGCCTACTAAATGGTGTTTACGAGCAGATACACTGCTTGTATAAGCTGTCTGATGCTGTGTCCATGCTGGATATGTTGCTCTCCCTGGCTAATGCTTGCACACTCTCGGACTATGTGCGCCCTGAGTTCACTGACACACTGGCGATAAAGCAAGGCCGCCATCCTACCCTGGAACGGATTACTGGCAAGCAGCCCATCTCTAACAACAGCTACATATCTGAAGGAAGCAACTTTGTTATTGTCACAGGCCCCAACATGAGCGGAAAGTCCACGTACCTTAGACAAGTTGCCCTTTGCCAAATCATGGCTCAGATAGGGTCATTTGTACCTGCTGAATATGCCTCCTTTCGTGTTGCTGATCAGATATTCACCCGAATTGGAGTAGATGATGATTTTGAGACAAACTCATCAACATTTATGGTTGAGATGAAAGAGGTGTCATACATAACGCACACTGCAAGTGAACGGTCACTCATCATTATTGATGAGCTGGGCCGTGGCACTAGTGCTGAGGAGGGCATTGGTATCTGCCATGCAGTCTGTGAATTCCTAATCAATTTGAAGGCTTTCACTCTGTTTGCTACCCACTACTTGGAACTGTGTCAGTTGGAGACTCTGTATCCTAATGTGGAGAACCAGCACATGCAGGTTCAGCACATTCGCAGGGAAGACAACAGCACAGAGAGCGTGGTCTATACCTATCTGCTGACTCGGGGCTTTTCTGAGGAACGCAATTATGGGATACGAGCAGCAGAGATGACTTCCATGCCACCATCCATCATCCAGGAGGCAAAGTCTATTGCAGCCAAAGTCAGCCAAAAGTTATGGGGAAAGCATCATAGTGACCCATCCACACAGCGACAGAGAGCAGACTATCATCTTGCCATGAGATGTGTGCAGACTGCCCGAAACTCCAGGCTGGATTCTGACAGCCTGTGCCTTTACCTGAAGGGTCTGAAGAGACAGTATGAGGCAGAGTTAAAAAGCATCCTAGAGGGCCATGAACATGGAGTGAATCCTGCCTGATTTATTAGAGATACAGGACTGCAAAATCCCTAGTAACAAGGATTTTGCAAGAAGGATGACCAATACGGCAAACAGTAACTAAAGAAGtaacaattaatttatttattgttaatgtatatGTAAGTATAGACTAATGTTCTCTTGTGGTTTAAAGACAGATAACATTGGGTTTATGGGTTTATATTACACAGTTAAGCAGTtaatttttatgtatgtttatagCACAGAGGgtcagtttttaaacattgccttcaattaaaaaaactttaaaccgCTGTCATTCTACAAGATTCATTTTTAAAGTTCTGGAAGCGTCAATAATTGTCATTTTCAGTCTCAAGTAACCTGTATATTATTAAGGTGTTTAGtcatattttataaactatgtcGTTCAGGAAtactgcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109962 lncRNA upstream 37456 18714205 ~ 18717199 (+) True G81602
TU109963 lncRNA upstream 38758 18714205 ~ 18715897 (+) False G81602
TU109957 lncRNA upstream 48373 18704815 ~ 18706282 (+) True G81600
TU109895 lncRNA upstream 204448 18545469 ~ 18550207 (+) True G81558
TU109866 lncRNA upstream 255777 18475117 ~ 18498878 (+) True G81540
TU110103 lncRNA downstream 101098 18865676 ~ 18865988 (+) True G81701
TU110111 lncRNA downstream 166578 18931156 ~ 18937144 (+) True G81705
TU110115 lncRNA downstream 176830 18941408 ~ 18941814 (+) True G81708
TU110135 lncRNA downstream 535780 19300358 ~ 19324568 (+) True G81725
TU110136 lncRNA downstream 535780 19300358 ~ 19324211 (+) False G81725
XM_022672862.1 mRNA upstream 5526 18716538 ~ 18749129 (+) False atg2b
XM_022672861.1 mRNA upstream 5526 18720222 ~ 18749129 (+) True atg2b
XM_022672863.1 mRNA upstream 5526 18720222 ~ 18749129 (+) False atg2b
XM_007252508.3 mRNA upstream 41768 18708412 ~ 18712887 (+) True npc2
XM_007252507.3 mRNA upstream 50580 18634170 ~ 18704075 (+) False eml5
XM_007252501.3 mRNA downstream 1075 18765653 ~ 18800218 (+) True ktn1
XM_007252503.3 mRNA downstream 1075 18765653 ~ 18800218 (+) False ktn1
XM_007252504.3 mRNA downstream 1075 18765653 ~ 18800218 (+) False ktn1
XM_015606682.2 mRNA downstream 1075 18765653 ~ 18800218 (+) False ktn1
XM_007252502.3 mRNA downstream 1075 18765653 ~ 18800218 (+) False ktn1
XR_002650340.1 other upstream 233708 18511622 ~ 18520947 (+) False LOC103033848
TU109874 other upstream 290559 18460130 ~ 18464096 (+) False LOC103035760
TU110107 other downstream 165660 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 901158 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 908549 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3593066 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 4465852 23230430 ~ 23231318 (+) True G82609

Expression Profile