RNA id: XM_015607316.2


Basic Information

Item Value
RNA id XM_015607316.2
length 1962
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC103041189
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 646899 ~ 651689 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGGGTCTGAGTGAGATGTCTGAGCTGCGGATTCAGGATGTTGTCTCCAGATGTGGAAAGTGATACGACTGCGGAGGAAACGGCGCCCAGCAGCCCGAACAGCGGCGCGGACACCCCGGCCAGCCTGGATGCGCTGGAGGAGCAAACGCCAGTGCAGCAGTCCCTGAGTGCATCCATGTGCCGCGAGATGCACTGGCGCTGTCTCCTCCTGTCTCTGCTGATGTACAGCTGTCTGGGTGCCGTGGCCTGGTGTCAGTTCACTCGCGTCACCAAGCTGAGTTTTGACTCCTCCAGCACCTCTTCCCTGACCTCCATCAACTCGCTCCGAGACGGAGGAGGACGCTCCATGATCTACCACGACAGCCCCTGCTCAGACGGGTACGTCTACATCCCCCTGGCCTTCCTGCTGATGCTCTACGCGGTCTACCTAATGGAGTGCTGGCACTGCCGCGCCCGCAGCGAGCTTCAGTACAAAGCCAACGTGGACAGCGTCTACGAAAGAGTCCTGCGCATGCGGCAGGCTCGACCGTGCGTCTGGTGGAAAGCCATCAGCTACCATTTCGTGCGGAGGACGCGGCAGGTCACACGGTACCGCAATGGGGACGCCTACACCACGACACAGGTCTACCACGAGCGAGTCAACACCCACGTGGCGGAAGGAGAGTTTGATTACAGTCGCTGTGGGATGAAGGATGTCTCAAGGGACTTGCGTGGCTTGGAGAGCCACACGGCGACGAGGCTACGCTTCAGCAAGTGCTTTAGCTTTGCGGGAGCAGGACCTGAGAACGCGTACCTCAACCAAAGGGCCAGGTTCTTCTCAGAGATTGAAGGTCTGGATGACTACATGGAAGCACGGGAAGGGATGCAGCTAAAGAACGTGGACTTCAAAGAGCATCTCATCACCTATGTGGATCCTGACAGGTTACCCTGGTATACCTCGCAGTTTTCTTTCTGGTTGACTGCTCTCCTCATGCTTTCCTGGCCTCTTCGTGTTTTAATAGAGTACCGCACGGCTTTTGTGCACTACCAGGTGGAGAAACTCTTCGGACTGGAGTACACCAACAGCAGTCCTTCTCCAGAGGACGCTGCTCCTGCGAGAAACGGTCGGTGTGGCATCCCGAGAGGAGACACGGTGGACAGCACAGAGCTGGAATGGCACATTCGTTCAAACCGCCAGCTCATCCCCAGCTACTCGGAAGCGATGCTGATGAATTTGGGGAACTCTGGAACAGGTCAAGGCGACAATTCGTCTTCCAGCTGCTTCTTGCTGGACGATTACCTGACCCAGAACTATGGAACCATGGTACAAGACTGTGAGCACTGCTGCCAGCTTGAAGGAGGACGTCGAGCCACCATTAGCTCCAGCTGTTCCTCCATCTTTTCTCGCCACACCTTCCACTCGCGGGTGTCCCTGGACACCTCCCGGTTTTCCCTCTGTCGAATGTACGGCTCCAGGCACACCGTGGGGCTGTGGAGGAGCCGGAGCAGTACGCTGACTGAGCGCTGCTGCCCGGATGAACAGTGCTGCAGATCCTACACCAGCCAACTCGCGCTCAACGACAGCCCTCCCAACTACCAGGACGCACGATTCTTCCCTGTGCTCATTGTGCACAGGCGTGAGGGCTGTGGTGATCCTTCAGAAGTGAGGAGATACTACGTCCGCAGGGGTTCCTGCTGTCTGGAGACTTCTCTTTGACttatcaaacaaaataaataaataaaaacactggtcTGAAAGAAAGTCAATCGAACAAGAACGACCAAAGAACTGTTCCAAGCTTTTAAgaggattttaaaaaatcaatgatGGAtcaaatcgtcgctgtccaatggaaAACACTTATatcaggaaagagaaaaaaacttatAAACCTTCAATGGAACTcaaagtaaaaagagtttatttcaggtcattttgaagagtttctattggtccgttcatcaaaaaatgttggcacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104035 lncRNA upstream 14527 631714 ~ 632372 (+) False G77154
TU104026 lncRNA upstream 25604 614011 ~ 621295 (+) True G77148
TU104013 lncRNA upstream 80244 566365 ~ 566655 (+) True G77137
TU104011 lncRNA upstream 85728 560903 ~ 561171 (+) True G77135
TU103902 lncRNA upstream 112295 522310 ~ 534604 (+) True G77060
TU104047 lncRNA downstream 6227 657916 ~ 660202 (+) True G77163
TU104054 lncRNA downstream 23187 674876 ~ 677225 (+) True G77166
TU104062 lncRNA downstream 47233 698922 ~ 760923 (+) True G77174
TU104096 lncRNA downstream 108725 760414 ~ 777173 (+) True G77191
TU104082 lncRNA downstream 134550 786239 ~ 817815 (+) False G77181
XM_022672545.1 mRNA upstream 151231 470513 ~ 495668 (+) False itpka
XM_022672546.1 mRNA upstream 151231 471454 ~ 495668 (+) True itpka
XM_022672539.1 mRNA upstream 277896 359136 ~ 369003 (+) True LOC103044274
XM_007237198.3 mRNA upstream 291919 352153 ~ 354980 (+) True ccdc32
XM_007237193.2 mRNA upstream 308952 321307 ~ 337947 (+) True disp2
XM_007255077.3 mRNA downstream 9850 661539 ~ 666304 (+) True adprhl2
XM_007255075.3 mRNA downstream 15516 667205 ~ 671575 (+) True cinp
XM_022672550.1 mRNA downstream 102550 754239 ~ 761723 (+) True nubpl
XM_022672551.1 mRNA downstream 102768 754457 ~ 761723 (+) False nubpl
XM_022672552.1 mRNA downstream 124435 776124 ~ 814690 (+) True arhgap5
TU104033 other upstream 14527 631714 ~ 632372 (+) True G77154
TU103901 other upstream 126309 519633 ~ 520590 (+) True G77059
TU103782 other upstream 513739 106902 ~ 133160 (+) False ldah
TU103781 other upstream 513739 126248 ~ 133160 (+) False ldah
TU103777 other upstream 531536 84729 ~ 115363 (+) False ldah
TU104123 other downstream 353440 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 832981 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1041667 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 2248445 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 2248445 2900134 ~ 2978094 (+) False G77722

Expression Profile