RNA id: XM_015607893.2


Basic Information

Item Value
RNA id XM_015607893.2
length 2215
RNA type mRNA
GC content 0.47
exon number 15
gene id dlst
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28662092 ~ 28675663 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGCTGCTGTTGGTTCGCCCCGGCGTGGTTGTGTCTCTCTGCCGCTTCTCCTGCTCCCTCCTGCGGGCCTTTACCGCTCTGTGTCCGGCAGGCGCGGATTGCCGATATGTTGTCCCGTTCCCGCTGCTTCACCCGCACCTTCGGCCGCTCCATCTCCGCCCTCCGGCAGagTAACAATGTCCTAGCAAGAAGAGCTGCTTCAGGCATATCATCTTCTCAGTGCATCTCAGTCAAGGACACTTTGAATTGTGAGACCAGGCCCAGCATCTTCCAGATCAGATACTTCAAGACCACTGCGGCTCACAGGAATGAGGTTATCACTGTTAAGACTCCTGCCTTTGCGGAGTCTGTCACAGAGGGGGATGTGAGGTGGGAAAAAGCTGTTGGTGACACAGTCACAGAAGATGAGGTGGTTTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTACCGTCTCCTGCTGCTGGAGTGATTGAGGAGCTGCTGGTTCCTGATGGAGGCAAAGTGGAAGGAGGCACTCCTCTGTTCAAACTGAAAAAAGGAGctgttgGTGCTGCGAAGGCGACCCCTGCCCCAGCAGCAGAAGCACCTGCAGCTGCAGCCCCTCCCCCACCACCTCCGACCCCTGCTGCAGCTGGGCCCATCCCTACCACCATGCCCCCGGTGCCACCAGTGCCAGCACAGCCCATCGCTTCTAAACCAGTttcagccatcaaaccaactgcagctcctgctgctgcaccTGCAGACACAGCCAAGGGGGCCAGGTCAGAACATAGGGTTAAGATGAACCGTATGAGGCTGAGGATTGCTCAAAGGCTGAAGGAAGCCCAGAACACCTGCGCCATGTTGACAACTTTCAACGAAGTGGACATGAGCAACATCACAGAGATGAGGAAGGTGTACAAAGATGCTTTTCTGAAGAAGCACAACATCAAACTGGGCTTCATGTCTGCCTTCGTGAAAGCCGCTGCCTATGCTTTGATGGACCAGCCTGCAGTCAACGCCGTTATTGATGACACAACCAAAGAGATTGTTTACCGGGATTATGTGGACATCAGTGTGGCAGTAGCAACACCAAAGGGACTAGTGGTACCAGTAGTTAGAGGAGTGGAAGGAATGAACTTTACGGACATTGAGAAAGCCATAAATGAGCTTGGAGAAAAGGCTCGTAAGAATGAACTGGCGGTGGAGGACATGGATGGTGGCACGTTCACAATCAGCAATGGAGGAGTGTTTGGTTCCATGTTTGGTACACCAATAATCAACCCACCACAATCTGCCATTCTGGGCATGCACGGCATCTTTGACAGGCCGGTGGCTGTTGGAGGCAAGgTTGAGATCAGGCCCATGATGTACGTGGCTTTGACCTACGACCATCGCTTAATTGATGGCAGAGAGGCAGTTACCTTCCTCCGTAAGATCAAGTCTGTTGTCGAGGACCCCAGGGTGCTTCTCCTGGACATGTGAGGATTTAAAGAAACGCACATGAATGGCAGACTTCCTCAAAGTACCAAACGAGTTCCCATCTCACACAGTGGTAATGTCCCCTGATATTCCTTGCTGCATATGATTTAACGATGTTGGTTAACTAGAGAAAGAACACTTCACTATGTTGGTTCACAATGGTTCATTCACTGGAAAGAGGGAGTAGGGAAATCTAAATTCGCATGGGCTAGAATTATGGAGAGGGTATTATAGTATAACATGTTCTCAGCTGGGATCTTATTTTCTTAGCAGGAAGGCTGTCATGCAGTTTCCCAATGCTTCTGccattttttaaacacttgtATAATTGTAATCCTTACAcagttaatttaaaataattgtacaAGTTTTATAATTATCAGTCCTATAACTAAGTTGCTCAAACTGTCCAGTTATTTGTCCCCTGAATGGCAAAGCAAGCGCactagtatacagtatattatgtgTTTCATATTCTCTGTGTAAAGAGTATTTGAAGAAGTTGTCATCCATCAAATGAACAGCAGACCAGAAACACTATGTTCCATTTTGCCATTGGTCTCAagttctatttttctgtttttgttttgtttattttttgttctttcaatGTTTGATACATACGTAACTAGTATGTCCCTCAAACAACTGAGATCAGACTCATTGGGAACAGATTCTGTCTATGCTGtttaaagaaattaatatttaatgaggaaagcttttaaacaaataaattgaaGAAAATGA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0045252 oxoglutarate dehydrogenase complex cellular_component
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity molecular_function

KEGG:

id description
K00658 DLST, sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113497 lncRNA upstream 74138 28587396 ~ 28587954 (+) True G84264
TU113440 lncRNA upstream 287575 28373948 ~ 28374517 (+) True G84219
TU113373 lncRNA upstream 301103 28301733 ~ 28360989 (+) True G84164
XR_002650284.1 lncRNA upstream 330684 28328775 ~ 28331408 (+) True LOC111193142
TU113147 lncRNA upstream 738734 27923069 ~ 27923358 (+) True G84001
TU113516 lncRNA downstream 30230 28705893 ~ 28723051 (+) True G84280
TU113518 lncRNA downstream 40417 28716080 ~ 28723051 (+) False G84280
TU113538 lncRNA downstream 94505 28770168 ~ 28772835 (+) True G84291
TU113542 lncRNA downstream 127451 28803114 ~ 28803321 (+) True G84294
TU113544 lncRNA downstream 148161 28823824 ~ 28825276 (+) True G84296
XM_022673105.1 mRNA upstream 101998 28428946 ~ 28560094 (+) True esrrb
XM_022673107.1 mRNA upstream 101998 28428946 ~ 28560094 (+) False esrrb
XM_022673106.1 mRNA upstream 101998 28428946 ~ 28560094 (+) False esrrb
XM_015607900.2 mRNA upstream 101998 28428946 ~ 28560094 (+) False esrrb
XM_022673109.1 mRNA upstream 101998 28448987 ~ 28560094 (+) False esrrb
XM_007257327.2 mRNA downstream 63578 28739241 ~ 28748428 (+) True LOC103029222
XM_007257310.3 mRNA downstream 99486 28775149 ~ 28801239 (+) True arel1
XM_022672486.1 mRNA downstream 178620 28854283 ~ 28969028 (+) True LOC111193134
XM_022673123.1 mRNA downstream 511912 29187575 ~ 29215673 (+) True adi1
XM_007257305.2 mRNA downstream 589390 29265053 ~ 29324443 (+) True eipr1
TU113122 other upstream 842545 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1914341 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1914341 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 2153967 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 2262825 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 294601 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 294616 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 323839 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 328431 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 365316 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile