RNA id: XM_022672449.1


Basic Information

Item Value
RNA id XM_022672449.1
length 2960
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC103042422
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1015833 ~ 1033566 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGTTGAAGCGGTGAATAAGGAGTCGTATCCTCTCCTTCATAGAAATGCTCTGGCTCCGTGGAGGCTCCTGAGGAGCAGAAGGGAAGATCTGGACAGTGAGCAGCGATGGAGACAGacgtctccctctctctgcagCTCGACTCGTCCTGATGAACCTCAGAAAGTAAAGGTGGGTTTATCCAGCGCTGCTCCTCGATTAATCCGGACCCTCAGCGTACCTGAGACCAGCTCCACCTGCCCTCCACCTGGATTCTCCTCCATCACCATCACCGCTCGAAGACTTTCCTTCAGCGGGGAGCTCTCCAACCAACAAACCCtgggagGACATCAAGGATTAAACCCCATGACCCGACCTGAGCtgcttcatcatcatcatcgagCATCCTCTTCCTCAGGAGTGAGATTGagagataatgatgatgatgatgatgatgatgatggtgatggtgatgatgatacaGCAGTAAAGAAGAAGATATCAGGAGAGAAGATTCCTGAACACAGACACAGTTTTACTGATAGTAGAACATCCAGAAACGAAGCTCATGAAGCTCCTCCAGTCTCAAAACGCCACATCTTTCGCTCCTGTGCTCACCTGGACCTTCTACCTGGACCCTCCCAGTCCTCCAACTCCATCCTTTACCTGGATAAATCCTTCTCTATATCTCTGGGACGTACTTCTCCTCAAACCATGCACAGATCCACTCTCTCACTTCAGCTCAGAGGGAGTTTCAGCTCCTCCAGTGACTGGAATTTACTGGATTTTACTCAGAATGGAAAAGGAGAACAATTACAGTGCTTTGAGgacaccacctccacctcctccatcacctccatcacctccatcaCCTTCACCACTGTCAACTCCAGACCCACCAGCTCAGACTCCACTCCAGCGACGGACACTTTAGCTCCGGCTCCATTCAGAGCGAGGAGCCActcatcctcatcttcatcctcatcctcagcagcagcagcagcagtatctGGATCTGTGGTCCGGCTGAATGGAAAGACTAATGGCGTCTCTGGGCCTCAGAAAAGCAGCAGTGGAAGAGGAAGTCCTGATGACTCAGATAACTCTAGAGGGAATATAAGAAGCTCTGAAGACGGCCGAGCGCTGAGAGTTCGTTCTGATACGGTTCTGAAAGTTCAGGAGTGTCCAGTTTCTCCACACGTGCTGAATTGTAGCTGCGGATGCAGCAGAAACCAGCCCGGCTTCCTCAGCCTGAAGgAGGCTCTGGAGCTCTTTCGACCCGACTTCATCTCCCGCTCTCAGAGACGAATCCGCAAACTGGAGCAAAAGACCAGAGAGAGGCGGAGCTTACAGAGCACAGATGAGATGGGGACGGACTCAACCAATAGGAAGCAAAATTGCACCAAGCCACATCCACTTAGTGATAACCTTTTCAAACCCAAGGACAGGGTGATTTCAGGCAAGGAGATGCAGCTCAGATCTCGACGgATTTACAACAAACTCCCGGAGGTGACgaagaaaaaggaagaagagaagaggaggatgGTGCTGCAGACCAACCGACTGAGAGCTGAAGTTTTCAAGAAGAAACTTCTGGATCAGATCTTACAGAGAAACAGCGACTGAATGGCGTCTGATTAGAATTCACGTCCTTCAGCCTCCTCTTGCCCGCGGCGATGAACCGAAGACTCGCGAGACCTTTTCAGGCCACAGTAGAGATCAGTGCAGGCTTTACGCATGCATGGctcaaaatacaaaacatgtttcCAGGGTCTGTTTATGTAGCGATGACTGATAATATCCTAAAATGAACAggaaaaaatgggaaatggaAAATTACTATGAGCTTAATGTTGAAATTCGCAGCTTCtacatgcttttgtatttctgcTTGGGTCTCGACTGACCTTACAACACtccaaaaaagtgtgaaaaagaaACTATCCAtccgttttctgtgaatcagagGAAAGGTTGGCGCAGAAATCATTGTTTGCTTCTATAAACTGTTGGAAGACGTCACTATAAGGAAACTTGCAAAGAACCACCATGGCACTACCCTTCATTCATCAGCTCCCACCAGAGCCACACCCACTTGATCAGTTAAACAATTTCACCACTTCAGTCATTTTGGttcagaacctcagacagtacacagcaggataagccagcagacttcttctgaaggagTGATCTATAACTtctgtccgtggcaagtcagcagacaAGCGGCAAACGACAAATCGAGTTTAACTAAATTAGTAATTCCGTTTGAATCTCGACTCTATAAACACTACAAAACTGGAAATTAGTAAATCAGTTGAAAAATTTAATTAGCcggcagacttcttctgagggagggatctataccttctgtccgtggcaagtcagcagacaAGTGGCGACAGACAAACCGATTGGAActaaattagaaagaaaactttAGGAAGAAAAGAGATTTAAAAGAGATTTAGTTTAAGTACTTAACAGAATACAAGACTGTATCTCTTTTTCGGTCTACTATCAGAGAGTTCATTTAAGGACAATTGCCAACTAACatttttaatctaaataatctttaaaactttaaagtggacatattatgcaaaactaactgtatgcttttgtatttccacttgggtctcgactCTACAAACACTCCAAGACGGTAAAAAAGTAATCATTTatccattttctgtgaatcagtggAAAAATTCAAGAATCAAGGTGTCAAAAATCTTATTCTTCtttgacgtcacaataaggaaacctgcaaaGAACCActctggctccacccctcacccatTAAAGTTCACAAGAGCCCCACCGACTAGAACATTTGAAGAAACGATTGcactttaatcatttttataaagAACCTAAGACAATAAACAGCAGGATTTAGGCaacagacttcttctgagggagggatctatacctactgtttGAGATGAAAGTTCTTATGGAttgcaaaatgaatt

Function

GO: NA

KEGG:

id description
K16773 FATS; fragile-site associated tumor suppressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104129 lncRNA upstream 38381 970551 ~ 977452 (+) True G77215
TU104104 lncRNA upstream 78600 936248 ~ 937233 (+) True G77198
TU104103 lncRNA upstream 80155 918337 ~ 935678 (+) True LOC103037215
TU104116 lncRNA upstream 102173 913108 ~ 913660 (+) True G77207
TU104112 lncRNA upstream 107553 907806 ~ 908280 (+) True G77203
TU104164 lncRNA downstream 204778 1238344 ~ 1238806 (+) True G77245
TU104180 lncRNA downstream 232271 1265837 ~ 1266074 (+) True G77259
TU104327 lncRNA downstream 310530 1344096 ~ 1345264 (+) True G77375
TU104329 lncRNA downstream 311777 1345343 ~ 1346504 (+) False G77376
TU104328 lncRNA downstream 311908 1345474 ~ 1349654 (+) True G77376
XM_022672556.1 mRNA upstream 81850 883297 ~ 933983 (+) False LOC103037215
XM_007255088.3 mRNA upstream 177680 834977 ~ 838153 (+) True eef1akmt2
XM_022672552.1 mRNA upstream 201143 776124 ~ 814690 (+) True arhgap5
XM_022672554.1 mRNA upstream 201162 776124 ~ 814671 (+) False arhgap5
XM_007255087.3 mRNA upstream 201199 776124 ~ 814634 (+) False arhgap5
XM_022672557.1 mRNA downstream 5308 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 5308 1038874 ~ 1179637 (+) False adam12
XM_022672559.1 mRNA downstream 153554 1187120 ~ 1203142 (+) True LOC103043042
XM_022672563.1 mRNA downstream 270501 1304067 ~ 1318118 (+) True LOC107197738
XM_022672564.1 mRNA downstream 285853 1319419 ~ 1329088 (+) True gcfc2
TU104123 other upstream 6991 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 383461 631714 ~ 632372 (+) True G77154
TU103901 other upstream 495243 519633 ~ 520590 (+) True G77059
TU103782 other upstream 882673 106902 ~ 133160 (+) False ldah
TU103781 other upstream 882673 126248 ~ 133160 (+) False ldah
TU104376 other downstream 451104 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 659790 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1866568 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1866568 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 2382602 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile