RNA id: XM_022672455.1


Basic Information

Item Value
RNA id XM_022672455.1
length 3555
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC103033947
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1805947 ~ 1831095 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgtTGGGACACATATATTGGGTTTATACTAAaaattctgttgtttttttttctgtttcacaGGACTACTTGGCTTATATCATAGATGCGAGAGACTTGCCCATTAAACCCGAGCAGGTTTGCTCCTTGTTTGGCAACATTGAAGTCATCTATGAATTTAACAGTGAGCTTTTGCAGTCTTTGGAACTGTGTGACAGTGATCCCGTGGCCATCGCCTGTTGCTTTGTGGATAAGAGCGAGTACTTCAACATCTACACCCAGTACTGCACAAACTACCCTAACTCAGTGGCGACTCTCACAGAGTGCATGAGGAACAAAACGCTGGCTAAGTTCTTCCGGGATCGGCAGGCGTCTCTGGAGCGCTCTCTTCCTCTCGGTGCTTACCTGCTGAAACCTGTGCAGAGGATCCTGAAGTACCACCTCCTGTTACAGGAGATTGCCAAACATTTTGACCCTGAGGAGGACGGTTACGATGTGGTGGAGGAGGCTATTGACACCATGACGGGCGTGGCCTGGTACATCAACGACATGAAGAGGAAGCATGAGCATGCAGTGAGGCAGCAGGAGATCCAGTCTCTCCTTATCAACTGGAAAGGTCCTGATCTTACCACATACGGTGAGCTGGTCCTGGAGGGAACCTTCCATGTTCAGCGGGCGAAGAACGAGAGAACACTCTTCCTCTTCGACAAGATGCTCCTCATCACCAAGAAGAGAGGAGAGCATTATGTGTACAAGACCCATATTACGtgctcCACTTTAATGCTGATAGAAAGTGCCAAGGACCTGCTTCGCTTCAGTGTTACTCACTACAAGCATCCCAAACAACCTCACACAGTGCAGGCCAAAACAGTGGAGGAGAAGAAGCTGTGGGCTCATCATATAAAGCGACTGATTCTGGAGAACCATCATGCCGTCATACCGCAAACAGCCAAAAATGCCATTTTGGATATGAACTCTCCTGGTCCAGCGAAATACCGCTACAGTCCAGAGAGACTGAAGAAGCCCATGTCTGCTTACAAAGAGGACTTTCCTGCTGGAGGACGAAAGGGACGAAGGAGATCAGAGCCGATGAAGCAGACTGTGAGAACTACAAGAGGAAGTCTCAAGCATGCAGAAAGCGAAGGAACTTTACTGGGAGACAGCAGTCGGCACCTCCTGCAGCCTGCATCAAGCGTCTCCACCCTAAACTCCACCACGGACGAGCCGGAGACTGAGGGACCGGCTCTAGAGGACAGAAGATCCGAGTGGCTTCAGCTTCGCACCAACTCTCTGGATCGCCTGAGTACTCCGACTCTACAATCCTGCCGACTAGAGATGCCTTtcgagagagagaaggaggtggaggtggaggaagaGCAGGGTGGGAGTGgcgaggaggaggaagaggaggaggaggaagttCTGGTGAAGGACGAGCAGGTAGCTGACTTTGCCAGCTCAGTGCTGGCCGCCATCTCCTGCTGGCACTATAGAGCCAAGGCTTTGCTTTTCACTCGGGTCCCAACGGATGTAGAAGAGGCTAGTCAGGATAATGGAGAAGAGACTGAGAGAAGCCAAACTCCTTCTGAAGACCAAGCCGAGGCATCAGCACTGTATGAAAAGGACCCTTGTGGGGATCAGGGCACACTGAGCAGCTCTCCGTCTAGTGGAGGCCAGGAGGAGTCAAGAGGACGACAACCTCCGAGTCACCCTGAGACGATGTCTCAGCATGGAGACGGAGAGCGGGAAGAGACGAATGCGGAGAGCAGTGTGGACTCGGTGTCTCCCATACGGAATGAGAGCCAGCTAGACCTTACTGAGGAAGACGTGGAAGACCCTGAGGTTGTtgaagatgaggaggaggaggaagaagaagaagaagaagaggatgaaGAAAATACATCACAAAATGAACCTGCAAGTCTCCTGCCCACATCCGTGCTGAACAAGGCCAGTGATATAGCTGAGCGCTTTATCAGCAGCCTGTCTCGTAGAGGTAGTCTGGTAGTGGACGACTTTTACTCTCAAGGCTGCGACTCTGAATCTAAAACAGGAAGTAGAAGGAGCAGTCTGCTCAGCTTGAATGCTGACATGTTGGAAAAAGAGATCATCACACAAGAACTGAGCGAGAAATGCTTATCTGAACCTTTAACTATCAATTCAATCGCAGATACCGATGGACACCCTGTCCAAATACCAGACCAAAGACCACCACAGAAGCAGGACACTCTTTCCAAAAAGGACAGGATGCTGATCCACAAGATCAAGCAGTACTATGAGCATGCTGAGCACCAGGACGCCAGCTTCAGCATCAGGCGCAGAGAGAGCCTGTCCTACATCCCCGCAGGGCTGGTGCGCAATTTGAGTCGACAGCTTAATTGCCTCCCGGACGATAAATCTCTACTTCCTGCCGACGTTCAGAGGAAGGCTTCCTCGGCTTCCTCGAGGCCAGCTTCCTGGGAAGTTTTTGATCTTCCTGGTGTATCcaggaaagaagaaaaagaaaccgacataaacactgtaaacactgtaaGGAGCAAAGATGAAGAAGTAAGATCTTCAATAGAGAGTAAAGACGAGTGCTTTAGACCCTCAGCTGAGATGATCAGCGTTTGGAACGACATGGAACTAGACGTTTTTGAAAATGCTGTTTCTAAAACAAATCAGGATGGCCATTGTGAATTGGCCAGTCCAAACcagaaaaagctaaaaaaaagtggCGAATGTACTGAAGCCCTGCTTATACTCGAGGATTCAGATAACAGCATGGCTGAACAAGAACAAGTGCCTTCCACTCTTTCTTTAGATGGCAACTATTCAGACTCTAAAGACCATGAGCTGAAGATGAGCCCAAACAGTCCTCACAAGCTCCAGGAGCGACGCAGGGTCAGACACGCTCCTCTACCCAAGATCATCTCCCTGAGGTCGGGCTCAGACGAAGACCTGATCCTGCAGGATATGGAGAAGATGAAGAACAAGGTCTTCCAGCTGGCTCGGCAGTACAGCCAGCGTATAAAGAACAGTAGACCCGTAGTGAGGCCCAGAGCCAGGGTGCAGGATTACCAGTTCACCCGCAAGAACCTGCCCTCTGTTATAGAAGACAAATCTCCAGAGCCTGAGAGGGGTGgTGCGCACAACTTCATACTGTCACATGCATCATGTGAGCCTATCGACCTGAGAGCCTCCAGTCCGTCTTCCAGCTCCTCCTCCGTGGGCAGTCCTCGAGTGCAGTCCCCCAGCAGAGGACCGGCTCTGGGTCCACAGAGTCCGGTCTACACGGAGAGCTTCCATTGGCCGGATGTACGAGAACTGCGCTCCAAGTATTCCCGCCACGGCGCCAGCCTCTCCCGATCAGCCGGAGCTGCTCTGTTCCAGAACGGATGCTCGAGGCGGCACATGGTCATTCCCAATCCCAATCCCATTCCCAATCCCAGCGTAGCTGCTCCTGTTCCACCCCGGTTTATGAAAGCGTAGTGGAGAACACAACACAAACTAAAGCCACAAGCAGTTCCTGCTGCCGGGAGTGCCAGGAACCTGCAGAACCAAAAAGTGCGGCTAAATTGTGTAAAGCGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104493 lncRNA upstream 34034 1757164 ~ 1771913 (+) True G77484
TU104468 lncRNA upstream 49881 1695164 ~ 1756066 (+) True G77464
TU104469 lncRNA upstream 49881 1714565 ~ 1756066 (+) False G77464
TU104479 lncRNA upstream 107049 1697987 ~ 1698898 (+) False zfyve19
TU104480 lncRNA upstream 107049 1697987 ~ 1698898 (+) False zfyve19
TU104502 lncRNA downstream 36000 1867095 ~ 1869007 (+) True G77493
TU104515 lncRNA downstream 81437 1912532 ~ 1937832 (+) False LOC103033080
TU104512 lncRNA downstream 84270 1915365 ~ 2009418 (+) True LOC103033080
TU104528 lncRNA downstream 195595 2026690 ~ 2030616 (+) True G77510
TU104544 lncRNA downstream 230018 2061113 ~ 2066854 (+) True LOC103031311
XM_022672578.1 mRNA upstream 53839 1734621 ~ 1752108 (+) True spint1
XM_022672577.1 mRNA upstream 53839 1734621 ~ 1752108 (+) False spint1
XM_022672452.1 mRNA upstream 97650 1697965 ~ 1708297 (+) True zfyve19
XM_007230365.2 mRNA upstream 158255 1645068 ~ 1647692 (+) True ankrd63
XM_022672450.1 mRNA upstream 188612 1581756 ~ 1617335 (+) True plcb2
XM_022672579.1 mRNA downstream 5694 1836789 ~ 1854878 (+) True LOC107197725
XM_022672585.1 mRNA downstream 169757 2000852 ~ 2006414 (+) False LOC103033080
XM_022672584.1 mRNA downstream 170850 2001945 ~ 2006414 (+) False LOC103033080
XM_022672588.1 mRNA downstream 256518 2087613 ~ 2146276 (+) True dnajc17
XM_022672590.1 mRNA downstream 415956 2247051 ~ 2312662 (+) True fsip1
TU104477 other upstream 108966 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 320897 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 797105 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 1173575 631714 ~ 632372 (+) True G77154
TU103901 other upstream 1285357 519633 ~ 520590 (+) True G77059
TU104827 other downstream 1069039 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1069039 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1585073 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 1585744 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 1588832 3419927 ~ 3419999 (+) True trnav-cac_1

Expression Profile