RNA id: XM_022672468.1


Basic Information

Item Value
RNA id XM_022672468.1
length 2483
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC103024072
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7766569 ~ 7799259 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCACGCGCTCTCTTTCCCCGGCCACCCAACCGTGAGTGTGTAACTCACTCCTCTTTAgttaccttaaaaaaataaaaaacatataaaaattacaaaatacagaaaatctTCATAAAAAAACCAACACCTCGCGgactaaaccaaaaaaaaggaaaaaaaacaacaacacatttttattttttaatttctaccaagcgttttattttctctctcaaaGTCAGAACAGGCCTCTGCGCGCTCCGGGACTAATTATTctaagttttttattattattattattattattattatttttattttttttcaggaccacctataattttttttattagctcgGAAACTTTACCACAGGTAACAGCAGCGGAGCCGGGCTAAACagctctatccctctctctctccctctgctacacgcacacactcactaacacacacacacacacactcagcccgGACCCTCGCGCTCCTCCGCCGCTCCGTTTTCAGCCGGACACCGAGGACCTCGCGCTATGAACGCGGCCGCCGCGGGGAGCTACCCGATGGCCTCGCTGTACGTGGGAGACCTCCACCCGGACATCACGGAGGCCATGCTGTACGAGAAGTTCAGTCCGGCCGGCCCCGTGCTCTCCATCCGCGTGTGCAGGGACATGATCACGCGCCGCTCGCTCGGCTACGCCTACGTCAACTTCCAGCAGCCGGCGGACGCTGAAAGAGCGCTGGACACCATGAACTTTGATGTGGTGAAGGGGAAGCCCATCAGGATCATGTGGTCACAGAGAGATCCATCTCTCCGGAAATCAGGAGTGGGAAATGTCTTCATTAAGAACCTGGACAAGTCCATCGACAACAAGGCCCTGTACGACACCTTCTCGGCCTTCGGAAACATCCTGTCCTGCAAGGTGGTGTGTGATGAGAACGGATCAAAAGGCTACGCGTTCGTCCACTTCGAGACGCAGGACGCCGCTGACCGCGCCATCGAGAAGATGAACGGCATGCTCCTGAACGACCGCAAGGTGTTCGTCGGGAGGTTCAAGTccagaaaggagagagaggcagagctgGGCGCCAAAGCCAAAGAATTCACCAACGTCTACATCAAGAACTTTGGGGAGGACATGGACGACGAAAAGCTAAAAGAAATCTTCGATAAATACGGTAAAACTCTGAGCGTGAAGGTGATGACGGATCCCACAGGGAAGTCACGAGGCTTCGGTTTCGTCAGCTATGAGAAACACGAGGATGCCAACAAGGTGAAGAAGCGTGAGGGAAATCCTGTGAAATCACTTCTGCAGTCTGAGATTGTTTTTTGGACGTGTTTTTTGCAGGGTGTGAATTTGTACATTAAGAATCTGGACGACACTATTGACGATGAGAAGCTGCGTAAGGAATTCTCTCCGTTCGGCTCCATAACCAGCGCTAAGGTGATGCTGGAGGAAGGCCGCTCTAAGGGTTTCGGCTTCGTGTGCTTCTCCTCTCCGGAGGAGGCCACCAAGGCCGTGACGGAGATGAACGGGCGCATCGTGGGCTCCAAGCCTCTGTACGTGGCCCTGGCTCAGCGCAAGGAGGAGCGCAAAGCCCACCTCACCAACCAGTACATGCAGCGCATCGCCGGCATGAGGGCCATGCCCGCCAACGCCATCATCAACCAGTTCCAGCCCACCAGCGGATACTTCATGCCTGCTGTGCCACAAGCCCAGAACAGAACAACGTACTACGCCCCCAACCAGCTGGCTCAGATGCGGCCTAACCCTCGCTGGCAGCAGCAGGGGGGCCGAGGTCAGGGAGGTTTCCAGGGCATGCCCAACTCACTTCGCCAGCCGGGCCCACGTGCCAACATCCGCCACCTCGGACCCAGCGCGACTGCGCAAGGACCCCGCGGAATACCAGGTGCCCAGAGAGTGGGTGGAACAGGGCAGCCCATGGGTCCCCGCCCCGCCCTGGGCGTGACCACTCCCCGGGCTATGCCTCCATACAAATACGCCACCGCAGTGAGAAACACTCAGCCACAGGTGGTCCAGCCAATTGCCTTACAGCAGGCCCAGCCTGCGGTTCATGTCCAGGGTCAGGAGCCACTGACCGCCTCCATGCTGGCTGCAGCCCCTCCTCAGGAGCAGAAGCAGATGCTGGGTGAGCGTCTGTTCCCGCTGATCCAGGCCATGCACCCCAGCCTGGCAGGAAAGATCACAGGAATGCTGCTGGAGATCGATAACTCTGAGCTGCTGCACATGCTGGAATCCCACGAGTCCCTGCGCTCCAAGGTGGAGGAGGCCGTGGCCGTGCTTCAGGCTCACCAGGCTAAGAAAGACGCCACACAGAAAGTTGGTGTGAGCGCTCCCACTGCTGCTGCATCCTGATGAGCAAAGCCCAACAGCCAAACGgCTGCAGCAAAGGCTTGAGAAGAAAACACTACACTGGCCGGTGCATTTCACAACCagatactaatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13126 PABPC; polyadenylate-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106120 lncRNA upstream 8369 7751414 ~ 7758200 (+) True G78728
TU106116 lncRNA upstream 18135 7747021 ~ 7748434 (+) True G78725
TU106108 lncRNA upstream 94798 7656329 ~ 7671771 (+) True fam167b
TU106161 lncRNA downstream 185322 7984581 ~ 7986723 (+) True G78753
TU106168 lncRNA downstream 195368 7994627 ~ 7996807 (+) True G78760
TU106195 lncRNA downstream 483681 8282940 ~ 8332434 (+) True G78786
TU106201 lncRNA downstream 556825 8356084 ~ 8356486 (+) True G78792
TU106204 lncRNA downstream 556868 8356127 ~ 8356486 (+) False G78792
XM_015607946.2 mRNA upstream 1892 7759849 ~ 7764677 (+) True LOC103024901
XM_022672660.1 mRNA upstream 22107 7682841 ~ 7744462 (+) True lck
XM_022672659.1 mRNA upstream 98768 7656307 ~ 7667801 (+) False fam167b
XM_007257587.3 mRNA upstream 322848 7410429 ~ 7443721 (+) True rtn4ip1
XM_007257590.3 mRNA upstream 454277 7284848 ~ 7312292 (+) True rab3gap2
XM_007257576.3 mRNA downstream 2961 7802220 ~ 7808950 (+) True ppie
XM_022672664.1 mRNA downstream 615948 8415207 ~ 8442555 (+) False erich1
XM_007257570.2 mRNA downstream 615979 8415238 ~ 8442555 (+) True erich1
XM_007257571.2 mRNA downstream 615979 8415238 ~ 8442555 (+) False erich1
XM_007257597.3 mRNA downstream 670342 8469601 ~ 8507161 (+) True LOC103031442
TU106111 other upstream 37568 7656329 ~ 7729001 (+) False fam167b
TU106110 other upstream 95795 7656329 ~ 7670774 (+) False fam167b
TU106040 other upstream 158905 7594707 ~ 7607664 (+) True G78671
TU105776 other upstream 905412 6857409 ~ 6861157 (+) False LOC103024862
TU105595 other upstream 2238604 5452115 ~ 5527965 (+) False LOC103025550
TU106244 other downstream 736657 8535916 ~ 8537682 (+) True G78818
TU106242 other downstream 742869 8542128 ~ 8549968 (+) False G78817
TU106236 other downstream 743926 8543185 ~ 8549968 (+) False G78817
XR_002650310.1 other downstream 1696190 9495449 ~ 9554528 (+) False spata17
TU107028 other downstream 3008112 10807371 ~ 10813470 (+) False fam98a

Expression Profile