RNA id: XM_022672486.1


Basic Information

Item Value
RNA id XM_022672486.1
length 2862
RNA type mRNA
GC content 0.55
exon number 16
gene id LOC111193134
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28854283 ~ 28969028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCGGCCATAGAGAAGCGCGAGCTCCATTCAAACTCTGCTCGAGGAGCTGCAGCAAGAGCACGAGCAGCAGAGCCcgacacacacgcactcacgcGCCTCCCATCAGCATGAGCCCGGCCGCGCGGACCCGTTAGCGCGCGCGCAACAGCGCAGTGACGAGACTTTCTGCAGACTTCACTGATTTACCCTGAGAACTATGAGCAGCAGAGCGCGCGGGATTTACAGCACGCGGGACAGTTGTGGTGTTtgttaaacctttattttttgcacGTGCGCGAATGTGTGACATCACAGTTTTACACTGAGCGTACACGCGCTGCTTTTAACGCACTTTTTATCGACGTTGTTTTTTACAAATCTGCACTGGACTGCACTTCTTGAGTTGAGTCTTCTCTggattatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcatggAGCGCCTGTTGTTTCTTCTCCTGCTGTCCCTCAgcctctcactgaccactgcgCTGGTCAGAACCCCCAGACAGCTGAGGACAGCGAGCAGAGGCCAGAGCAGTGTCAAACCAAGCCCACCTGACCAACAGGAGAGCAAAGCTACACACACCAGGAAGCTTGTGGGGCCACACGTGTGCGGGggtcagcagtgctgttcaggATGGGCTGTTGCACCTGGGACGAACCGTTGCATCAAACCGGATTGCCAGCCCCCCTGTCAGAACCGTGGCTCCTGCAGCCGTCCCCACACGTGCGTGTGCCGCTCTGGCTTCCAGGGAGCACGCTGCGAGGAGGTGGCCCCAGAACAAGTCTATATTCGCACCGGGACGTCCAGAGTGTTGACCCCCGTCCGACCTGGCAGCGAATCCTCCCAGAGGCAGCCCACCCGCAGACGACCCACCGAGAGGCAGGCTATCGACACAAACACCAGAACCCACACGCCCAAACCTCCGACCACCAGACTGCCTCACTCACCTGTAACGCAGGTCAGACGAGGCTCTCCAGATCTTTCACCGCAGCAGACTGGCTCATCGAGGACCGTTAAGAGGTACCCTTCATCCACTGGACCCATCACCTCCAATGCTCTGCCCAACGGCCACAGCAATGGAAACAGACATGGCAGCCATggatatacacacactcagcatcTCTCGTCCTCCGGTGGCCAGCTGCGTGAGTCCCAGAGCAACGCAGTGTCTCCAGCAGGAGCCAATCTGACGGCCGGCGTGGACCGCATCAAGATCATCTTCACGCCCATGGTGTGTCGGAGGACCTGTAGCGGGGGGCGCTGCTACAACAGCTGTGAGCGTGGAGACAAAACCACCGTATACAGTGAGAACCAAGGCCCAGCACCCAAAAGCCAAGGCTTCAGACTCTTCTTTTGTCAGATTCCATGTCTGAATGGAGGACGCTGCATTGGGCAGAATGAGTGTTGGTGTCCATCAAACTCCACAGGAAAGTTCTGCCATCTTCCAGCTCCTGCTCCCAGCAAAGCTACCCCCAGCAGACGGGCCAATAGCAACGGAGCACAGAACGGATCCTCCCACTCTATGTACACCCTGCCTCTGTCCAATCAGCAAGCCTCCATGCTTCCCTCACTGGTGAATGTGCATGTCCAGCACCCTCCAGAGGCCGAGGTTCAGATCCATCAGGTAGCACGGGTCAAACCAGGCCAACCTCCTGATGGGGCACATTCAGTGCAGCAGCGTTCTCAGCCTGGAAACGGCAACGGCAATGGGGTTGGGAATGGCAATGACCACTATGGTGTACACGTCAATGGACAGAACAACGGACACAGCCACCAGAGGCCTCATAACAGACACAATGGATATGTGGGAAGGTGCTTCCAAGAGACAGTGGATGGAAAGTGTGGGAAGCCTTTGCCAGGCCTTACCAAGCAGGAGGACTGCTGTGGCAGTGTGGGGGCTTCATGGGGTCTGAACAAATGCACCGAGTGTCCAAGCAAACCCGCTTACGCAGTGATCGCCAACGGCCAAGTGGAATGTCCTAAAGGCTATAAGAGGATGAATTCAACTCATTGTCAAGATATCAACGAATGTCTGATGCCTGGCATCTGTAAGCATGCAGAATGTCTCAACACCAAGGGTAGCTACAGGTGCACGTGTAAGCCTGGATACATGCTGGATCCTGCCCGCAGCCACTGCGTCTCGGATAAAGCAGTGTCCATGAATAAAGACTCCTGCTACCGGACAGTTTCAGCAGGCACATGTAGCCTCCCACTCACCCTGAAAATCACCAAACagatctgctgctgcagccgaGTGGGCAAGGCCTGGGGAACCAACTGTGAGAAATGCCCTGTGCCTGATTCAGATCACTTTAAGGAAATCTGTCCCGCAGGCCACGGCTACACCTACTCCCATTCAGACGTGCAGATCACACTGCGAGAGCTGGAGGACGAGGAGCTTAGCCGAGTCGAGTCTTTCTTTCCTCAGATCCCCACATATCCTCTGCCTGACCAGATCCCTTTAGAGCCTCCCCATCACTCGCCCCAAATACCAGTTTCTCCTCGCCCTCCCTACCACCACCCTCAGACTCCTACAAGACCACAGCCGCAGCCTGGACAACCACCCAGAACAGCACAGGTCCCTCATCGTCCTTGGACTGACTTCCAGCACCCTGTACACGTGTCTCCGTCATTACCTGATGCTGATGAAACCTGGAATGTGCCAACCTTCACAGATCCACCTCTTGTATATCcagatgtAAGGGAGGTCACTCCTCAATCGCCCACCCACCTAAAGCCAGAGTCTAACAGCCGGGACACAGCTCCAATAAATGTTGCCACACAAGCCACAGGGGATACTGacctgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113544 lncRNA upstream 29007 28823824 ~ 28825276 (+) True G84296
TU113542 lncRNA upstream 50962 28803114 ~ 28803321 (+) True G84294
TU113538 lncRNA upstream 81448 28770168 ~ 28772835 (+) True G84291
TU113516 lncRNA upstream 131232 28705893 ~ 28723051 (+) True G84280
TU113518 lncRNA upstream 131232 28716080 ~ 28723051 (+) False G84280
TU113548 lncRNA downstream 10445 28979473 ~ 28979778 (+) True G84300
TU113560 lncRNA downstream 30681 28999709 ~ 29009835 (+) True LOC103045392
TU113565 lncRNA downstream 43563 29012591 ~ 29018336 (+) True G84307
TU113567 lncRNA downstream 45989 29015017 ~ 29015457 (+) True G84308
TU113578 lncRNA downstream 58260 29027288 ~ 29027823 (+) True G84313
XM_007257310.3 mRNA upstream 53044 28775149 ~ 28801239 (+) True arel1
XM_007257327.2 mRNA upstream 105855 28739241 ~ 28748428 (+) True LOC103029222
XM_015607893.2 mRNA upstream 178620 28662092 ~ 28675663 (+) True dlst
XM_007257340.3 mRNA upstream 294189 28484727 ~ 28560094 (+) False esrrb
XM_022673123.1 mRNA downstream 218547 29187575 ~ 29215673 (+) True adi1
XM_007257305.2 mRNA downstream 296025 29265053 ~ 29324443 (+) True eipr1
XM_022673125.1 mRNA downstream 445484 29414512 ~ 29625594 (+) False LOC103038403
XM_022673128.1 mRNA downstream 464798 29433826 ~ 29610931 (+) False LOC103038403
XM_022673129.1 mRNA downstream 464798 29433826 ~ 29610931 (+) False LOC103038403
TU113122 other upstream 1034736 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 2106532 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 2106532 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 2346158 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 2455016 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 1236 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1251 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 30474 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 35066 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 71951 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile