RNA id: XM_022672523.1


Basic Information

Item Value
RNA id XM_022672523.1
length 3295
RNA type mRNA
GC content 0.44
exon number 13
gene id tpp1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 163028 ~ 173869 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGACGCGCTGAGAGTAGGCGGGGTTAGTTCACATTGCGgtggtgtttttgtgttgtgtttgtgtgagttagtgagttaccgagttaatgtgttagtgttttagtgttttagtgagttagtgtgtTTGGTGCTCCGGATAGTAAAGTTGGGGGAGAAAATGCGGGGACTCGCTGTGTTCTGGATCTGTGTTTATCTGGTCCGCGCGGATCGATTAGAAACGGATCAGATTTTATCTGTGCAGGAGGGCTGGATTCATGAGGGCCGAGTTTCTCCTCTGGAGGAGGTGGAGCTCACCTTCGCCCTGAAACAGCAGAACATAGAGAGACTGAAGGAGCAGCTGGAGCTGGTGTCAGACCCCGACTCTCAGCAGTATGGGAAGTTCCTGTCTCTGGAGGAAGTGTCCTCTCTGGTTGGTCCGTCTCCGCTGACGGAGAAAGTGGTGCAGAACTGGCTGCAGAGTCACGGAGTCACGAGCTGTCTCACCGTTCTCACGAGGGACTTCCTGCAGTGCTCCATGAGCGTCCAGGTGGCGGAGACGCTTCTTCCCGGTGCAGAATTTCATCGCTACAGGAGAGAAGATCAGACCCTCGTGAGGTCGTCCGCGCACTACTCCGTTCACGATGATGTCACCGAGCATCTGGATTTTGTCGGAGGCGTGCTCCGTTTTCCACCTAAAGTAAAGGAGATCAGTCGGAGCTGGGCGGGAGCGAGACGATCAGTAAAGGGATTTCACCTGGGTGTGACTCCATCAACCCTCAGGACCCGATACAACCTCACCGATACAGACATAGGAACTGCTGCTAACAACAGCCAGGCTGTGGCACAGTTCCTGGAGCAGTTCTATCACCCGGCGGACCTGGCGGAGTTCATGAGCTTATTTGCGAGAGGCTTTCAGCACCTGACGGAGGTGGAGCGGGTGGTGGGGACTCAGGGTGGGGGTAAAGCTGGTCTGGAGGCGAGTTTGGATGTGGAGTACATCATGAGCACCGGAGCAAACATCTCCACCTGGGTCTTCACCAACCCGGGACGTCACGAGACTCAGGAGCCGTTCCTGCAGTGGATGCTCCTCCTCAGTAACATGTCGTCCGTGCCGTGGGTTCACACCATCAGTTACGGAGACGACGAGGACAGCCTGTCCTCCGCTTATATGAACCGCATTAATAATGAGTTTATGAAGGCGGGAGTTCGGGGAATCTCCATGCTGTTCGCCTCCGgggACAGTGGGGCCGGATGCTGGCACAAGACTAAAGAAGAAAACGTGTTCAGGCCGAGTTTTCCTGCTTCCAGTCCGTACGTGACCACAGTGGGAGGGACTTCCTTCAAGAACCCCTTTAAAGTGACCTATGAGGTGACAGATTACATCAGTGGGGGCGGGTTCAGTAACGTGTTCCCGATGCCGGATTATCAGgTCAGTGCAGTGAAAGCGTTTCTGAAAGGGAAGCCGTCTCTTCCTCCTCAGTCCTACTTTAACTCCAGCGGGAGAGCGTACCCCGACCTCGCTGCTCTCTCAGATAATTACTGGGTCGTCACCAACCTGGTGCCCATCCCCTGGGTATCTGGAACCTCGGCTTCGACTCCAGTAGTGGGAGGAATCCTCTCTCTGATTAATGATCAGCGCTTCCTGAAAGGTCTTCCTTCCCTCGGTTTCCTCAACCCTCGTCTCTACAAACTCCAGGGAACCGGACTGTATGACGTAACGGAGGGATGTCACCTGTCCTGTCTGgatgatcaggtacagggacaAGGCTTCTGCGCTGCTCCGTCCTGGGACCCCGTGACGGGATGGGGTACGCCCAATTATCCCGCTCTACTGGCGGAGCTGGTGAAGGGTTAATCCTCTGATTAGAATCTAGTTAAATTTCATCCAGCAAACATTGCAATCATATCTCACAATGTTTAAATTTAAGATTATGGgcttttaatttgtattaaatgttactgattgttttaatgctgtttattttagttaaaagcatcttttaaggtcagATTATGATGTTTTGTTGGATTGAAAGTTCCAAACACATCAGATCCACATCtgcatgcagatttttttttgctgctaaagtttTTAAAGTACTGTTGATTAATAAAAAGCCTAAAGTTTTATAAATTCTCTATAAGGGCGTTGCTTTATACGTTTTGCATTATAGAATCattcacatttttcattttcaacaaaaacagaacaaaaacactgGAGGAGAGTAGAAGAATGTGGTAAATATGGATTTTCTGGCTGTTTGATTGGGAGGTGATGGATGTGTCGATCGGTCTTTAAGCAAATTGCACTAAAAACTGTAATGCTCTGCAAATCTGTTTTATCACCAATTAATCACTGGGGGTTTTCACTAGTTtaccagacagggattaaatcTCATCTTGAACTAAACAAGATCTAAATTGAGtttttctattaatattaaatgtactctaaggctaggcttaatccctgtgtGGAAAACCGACCCCTATTGATTTATCAATAAATTAACTTGAGTATACTTTTaacataaatgctttaaaataacatttattaaatgtataaatgcagTTCTGTCTAGATGGTGATTACCTGCCTCAGGTGTTTGGATCACTTTTTggacagaattatttttttgggCCTGAAGATCaattaaaattgtaattattGAAAAGTTTTTCACTTctagtttatacaataaaatattcctATAGAAGGAAATTATGATCcatttcatacatttacatgcattacttttgtgtgttgtgtaaaagaaaaagaaagaaatttacACCATTTTGAccgtttacacctggtcactttgtGTGATTAGAATTTAGATTTTATCCTgattatttagaattaaatctGATTAGTGTGTcagttttactttaatttgcaGCAGTTTATTCTGGATATTTGGGTTGTTAAAATGCTCAGATAAAATAGTTCATACTGCTGTAACATAacataatatgtttaaatgcgtctcagaacAATGCgtgatttgattgattgattagatTTGATCTGTTTGAAATGCAGATTAGGTGCATTATCTCTGCTTTATCTACACATATAATAATGATGTCCAATAAGAATAAGGAAGCCGTGTGTAAACAGGGGGTTTTGTTTGTGAGTTAAAGTTGAATAAGGTACTGTTTTTATGCTGTTTAGAGAGAAACGGATGAGATTAAGATCTGCAGTGCAGAATTATTGATGCCTTTCAGTAAAATTTCAAAGtgtttttcttgcttttctcAGGGGATGTAAATGAAGTGtgaattaataaaaattttGATAAAATTAA

Function

GO:

id name namespace
GO:0045453 bone resorption biological_process
GO:0007626 locomotory behavior biological_process
GO:0006508 proteolysis biological_process
GO:0043171 peptide catabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0005764 lysosome cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0008240 tripeptidyl-peptidase activity molecular_function

KEGG:

id description
K01279 TPP1, CLN2; tripeptidyl-peptidase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103792 lncRNA upstream 38236 123786 ~ 124792 (+) True G76972
TU103789 lncRNA upstream 44258 113419 ~ 118770 (+) True G76970
TU103788 lncRNA upstream 45576 113328 ~ 117452 (+) True G76969
TU103791 lncRNA upstream 46429 115801 ~ 116599 (+) True G76971
TU103749 lncRNA upstream 114597 43618 ~ 48431 (+) True G76948
TU103816 lncRNA downstream 24002 197871 ~ 203592 (+) True G76992
TU103820 lncRNA downstream 48662 222531 ~ 232122 (+) False G76995
TU103821 lncRNA downstream 56408 230277 ~ 232122 (+) False G76995
TU103823 lncRNA downstream 56408 230277 ~ 232122 (+) True G76995
TU103826 lncRNA downstream 56408 230277 ~ 232122 (+) False G76995
XM_022672521.1 mRNA upstream 29725 84719 ~ 133303 (+) True ldah
XM_022672520.1 mRNA upstream 87143 52801 ~ 75885 (+) True apob
XM_022672524.1 mRNA downstream 4537 178406 ~ 189134 (+) True degs2
XM_007237180.3 mRNA downstream 7422 181291 ~ 189134 (+) False degs2
XM_007237193.2 mRNA downstream 147438 321307 ~ 337947 (+) True disp2
XM_007237198.3 mRNA downstream 178284 352153 ~ 354980 (+) True ccdc32
XM_022672539.1 mRNA downstream 185267 359136 ~ 369003 (+) True LOC103044274
TU103782 other upstream 29868 106902 ~ 133160 (+) False ldah
TU103781 other upstream 29868 126248 ~ 133160 (+) False ldah
TU103775 other upstream 47665 84729 ~ 115363 (+) False ldah
TU103901 other downstream 345764 519633 ~ 520590 (+) True G77059
TU104033 other downstream 457845 631714 ~ 632372 (+) True G77154
TU104123 other downstream 831260 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 1310801 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1519487 1693356 ~ 1696981 (+) True G77471

Expression Profile