RNA id: XM_022672545.1


Basic Information

Item Value
RNA id XM_022672545.1
length 2207
RNA type mRNA
GC content 0.55
exon number 8
gene id itpka
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 470513 ~ 495668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAGGAAGCAGCAGCTCGTGCGCAGCACGAACACGGAAGATCCTCCCGGAGAGCGCGCGGCGCGGGGCTGAGCTGAGCTCGAGCCGCGCGGAGCTTCACTCACTGCAGCCTCGTCTGAACGGAGCAGCGCGTGCGGGGGACCGGCGGGAGACACGCGCACATATACCCGCACCAGAGTGCGGGACCGCCGGGAGCGCGCGTGCGGGGAGACGCGGAGCTGCGGGagcaggaggtggaggaggtggaggcaGGAGGCAGAAGGGGTGTCCTGAGGCTGGTTCCTCTGCGGTTCCTCTCCTGAGGCAGACAGATGCCCAAAGAGAGGCGGAGGTCTCTGAGGGAGGCCGCGGTGAGCAGGGCTTCTCCTCTGGGGGACGGCGGCGGGGCGGGGAAAGAGCGCCGCTTCTCCACCgatcagcagcaggaggagcatCAGTCATccatggaggaggaggagcagcaggagctccagCGGAGCTCCGAGCACAGCGGGCCGGGCAGGGGCGGCCCCGTGCCGCAGGTCACCATCACCGCGGCCGCCGCGGACGGGCTGGCggagctggaggagaacatggacgAGGTGAACGGACCCCTCCGCCGCAAGCTCTCCaactcctccatctcctccaaCGGGTCCTCCGCCGCGATGGAGGAATCGGAGGACGATATTCTGAGCGACAACGAGACCAAGAGCAAAGGTATCGTTACTCTGGAGCACCTGGGGGACTCAGGAGAGgCTAAAGCCTGGTGGAAGCTGAAGACTGTTGTACATTGGCCTCTCGTAGCTTCACATAGGAAGAGACTGTCCTGGGTCCAACTTGCGGGTCATAAAgGAAGTTTTAAAGCAGCTGAAGAGGGCACGATCCTGAAGAAATACTCggagaatgagaagaggtgtttTGAGAGTCTGAGAGATGACGCTCTCCAGCGTTTTGTTCCAGCGTATCACGGCGTGGTGGAGCGAGACGGAGATCTCTTCCTGCAGATGAACGACCTGCTGGTGAACTTCGATGGGCCGAATGTCATGGACTGCAAAATGGGAGTGAGGACGTatcaggaggaggagctggagcgaGCTCGGGAGAAGCCGAAGTTGAGGAGGGATCTGTATAATAAGATGTTGGAGGTGGACAGTGAAGCTCCTACAGCCGAGGAGCAGAAGCAGCAGGCCATCACCAAACCCAGATACATGCAGTGGAGGGAAAGCCTCAGCTCCACCAACACTCTGGGGTTCCGCATCGAGGGCGTCAAGAAAGCAGATGGAACGTGTCACACAGACTTTAAGAAGACTCGGTCGAGGGAGGACGTAACGCAGGTCTTCAGGGACTTCGTCAGCGAGAACGGAAACATAATTAGCTCCTACATTAGGAGGCTGGAGGAAATCAGACAGGCTCTAAAGGCTTCAGAGTTCTTCATGAAACACGAGGTCATCGGGAGTTCGCTGCTGTTCATCCACAATCACACGGAGCGCGCCGAGGTCTGGCTGATCGACTTCGGGAAGACCACGCCGCTTCCAGACGGACAGACGGTGGACCACTGGAGCCCCTGGCAGGAGGGGAACCGAGAGGACGGATATTTATGGGGTCTGGAGAACCTCCTCCATACCCTCACCTCACTAAACACAGAGTGCTCACCACAGCGTGTTCACACTCAGCGTTCACTATGATAACTCTCCATCTGATCTCCAGACGAGGAGGAAACGGAGACAGGGACTCTTTCACAGCGTGCCGCGGACACAAGTGACGTCACCATCTCCTTATTTACAGGATTCAGCCGAAAAATCTCTCGTTTCTGACTCATCCGTCGAGTTCGTCTCGAGTTTTCTCTTTATACGAGTCACTGATCAGCAGAGCTGCTTCTAAACTTCACCTGGTGCTTCTTATTTTTCTCTAGATATGATCAAACCCCACagcaatgcatttaaaataatcCAACAGCCATAATCAACACTATAAACACAAACAGCTCGGTAAAAAATGAGGACATTGGTTTTAGCAGAAATAAGGTACTGTacgtatattttacattctagtttttagacaaaaatgaaaaaacaacatggccaaatgctaatgctaagtaaaaaatggtaaaatgatgACAAGCTGTTGGCTGTTGGTGTTCAATAgaccaatatacagctctgaaaaaaaaatatttcagtttttctgattttgcaatATGTTtgagtggaataaccctggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103886 lncRNA upstream 2613 457903 ~ 467900 (+) True G77049
TU103883 lncRNA upstream 5381 459268 ~ 465132 (+) True G77048
TU103864 lncRNA upstream 87229 383045 ~ 383284 (+) True G77033
TU103797 lncRNA upstream 112400 238265 ~ 358113 (+) False G76976
TU103798 lncRNA upstream 112400 302486 ~ 358113 (+) True G76976
TU103867 lncRNA downstream 5457 501125 ~ 501997 (+) False G77035
TU103896 lncRNA downstream 20958 516626 ~ 529843 (+) True G77054
TU103902 lncRNA downstream 26642 522310 ~ 534604 (+) True G77060
TU104011 lncRNA downstream 65235 560903 ~ 561171 (+) True G77135
TU104013 lncRNA downstream 70697 566365 ~ 566655 (+) True G77137
XM_022672539.1 mRNA upstream 101510 359136 ~ 369003 (+) True LOC103044274
XM_007237198.3 mRNA upstream 115533 352153 ~ 354980 (+) True ccdc32
XM_007237193.2 mRNA upstream 132566 321307 ~ 337947 (+) True disp2
XM_022672524.1 mRNA upstream 281379 178406 ~ 189134 (+) True degs2
XM_007237180.3 mRNA upstream 281379 181291 ~ 189134 (+) False degs2
XM_015607316.2 mRNA downstream 151231 646899 ~ 651689 (+) True LOC103041189
XM_007255077.3 mRNA downstream 165871 661539 ~ 666304 (+) True adprhl2
XM_007255075.3 mRNA downstream 171537 667205 ~ 671575 (+) True cinp
XM_022672550.1 mRNA downstream 258571 754239 ~ 761723 (+) True nubpl
XM_022672551.1 mRNA downstream 258789 754457 ~ 761723 (+) False nubpl
TU103782 other upstream 337353 106902 ~ 133160 (+) False ldah
TU103781 other upstream 337353 126248 ~ 133160 (+) False ldah
TU103777 other upstream 355150 84729 ~ 115363 (+) False ldah
TU103901 other downstream 23965 519633 ~ 520590 (+) True G77059
TU104033 other downstream 136046 631714 ~ 632372 (+) True G77154
TU104123 other downstream 509461 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 989002 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1197688 1693356 ~ 1696981 (+) True G77471

Expression Profile