RNA id: XM_022672558.1


Basic Information

Item Value
RNA id XM_022672558.1
length 4473
RNA type mRNA
GC content 0.53
exon number 23
gene id adam12
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1038874 ~ 1179637 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gATTGGACAGCGCGGGCTGAGTGCTCCGCGGCTCCACGTGCGCGGCGGCGCTTCATTCAGGGTTTGCAGCGTCCGGAGCTCGCCGGACacgatcctcctcctccctcctctcCGCGCGGATCTGCTTCTGTATCTCCCGCTCAGGAAACttagttatgtgtgtgtgtgtgtaagtgtgtgtatctCCCCCTCGGGGGCTCGCGCCGCCCCGCCTCCAGCAGTTTGGGATTTTAAGCGTATTGTCGGAAGTCCCTCGCATCCTGTCACATCCTCTGCGCGCGAGCGCATGGGAGcgggtgtgtgtgagcgagtatgtgagtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgggaGTGTTTAAAGGGAGTATAGTAATATTAAGGAGAGCCCTCGCGCCGGTTCTTCTTCCAGCTCCGCGAGCCGCGGGGAACATGGGCAGCGGGCGGCGCGCGGGGCTCTgcgctgtgctgctgctgcacgcgCTGGCGTGGCTCGCGCTCGGACTGACAGGAGATTTATCAGAAGAGAGGAGATTAAGGAGTGCCGTTACCAAGCTGGAACGTTACCACACTACGGtaccgctgctgctgctgccggacGGAAACGagcctcagccaatcagctggcTTAAATCCAGGAGTCCTCCCGCTTCACTGCAGATATTGATAGAGGCAGAAGGTCAGCTGTTGATCCTGTCTCTGGAGAAGAATGAGGGTCTCTTCAGCAGCAGTTATAGTGAAACGCACTACAGAGAGGACGGAGAAGctgttactcacactcacaacactaTGaCGAACTGCTATTACCATGGCAAGGTCCAAGGACACGCCCACTCTGATGTCAGTCTCAGCACTTGCTCCGGTCTCAGGGGCTTCATCTTACTTGAAAATGAGACGTTGATGGTGGAACCTGCATTTGAGCCGGAGAACGGTACACATGTGATCTACAGAGCAGAGCTTCTGACCCCGCCCTCTGGAACCTGCGGCCACGGACACAACATCTCCACCTTTAATCACAGAGGATCTGCAGGATTTCTACAGTCCATCAACAGCAGGtATAAACGAGACGCCCAGAAGACCACCAAATACGTGGAGCTGATTATCGTGGCGGACAACAGGGAGTTTCATAAACAGGGTAAAGACGTAGAGAAGGTCAAGCAGAGGCTGGCTGAGATCGCCAATTACGTGGATAAGTTTTACAGGGCGTTGAATATCCGTGTAGCTCTGGTGGGTTTGGAGGTTTGGAGTGATTCTGATAAATGTCCCGTGACTCAGGACCCGTTCACCACGCTGCACGAGTTTCTGGACTGGAGGAAACTCAAACTGCTTCCCCAGAGACGCCACGATAACGCCCAGCTCATCAGTGGCGTTTATTTCCAGGGCACCACCATTGGCATGGCCCCCATCATGAGCATGTGCACCGTGGAGCAGTCCGGCGGCATCGTCATGGATCACTCGGATAACCCCCTGGGAGCAGCCGTGACGTTAGCGCATGAGTTGGGACACAACTTTGGAATGAACCACGATACTCCGGAGCGGGGGTGCGGCTGCAGGATGACAGTAGATCGGGGGGGCTGCATCATGACCCCCTCCACAGGGTACCCGTTCCCCACCGTGTTCAGCACCTGCAGTAAGAAGGATCTCGCTGCCAGTCTGGAGAAAGGAGTGGGCATGTGCCTCTATAACATGCCTGAGGTGAAAGTTCTGTACGGAGGACAGAAATGTGGAAACGGCTACGTGGAGGAAGGAGAGGAGTGCGACTGCGGAGAGCTGGAGgAGTGTATGAACCCCTGCTGTAACGCCACTACCtgcactctgaaaggagacgcTGTTTGTGCTCACGGACAGTGCTGTGTAGACTGCCAGctgaAGCTTGCTGGAACACCCTGCAGGGAGTCCAGTAACTCCTGTGACCTGCCGGAGTTCTGCACCGGCTCCAGCCCCCACTGCCCTGCTAACGTCTACCTGCACGACGGCCACGCCTGTCACAACGCAGACGGATACTGCTATAACGGCATCTGCCAGACGCACGAGCAGCAGTGCATCACCCTGTGGGGACCAGGAGCCAAACCTGCACCCGGGATCTGCTTTGAGCGGGTGAACTCAGCCGGGGACCCCTATGGGAACTGTGGAAAGGATTCCAAAGGCTCTTTCGCCAAATGTGAACCACGAGACTCCAAGTGCGGTAAAATCCAGTGCCAGGGGGGAGCCAACAGGCCCGTCATTGGTACCAATGCTGTTTCCATAGAAACCAACATCCCGCTGCAGGAGGGGGGGCGTATCCTGTGCAGGGGGACACATGTGTACCTCGGGGATGACATGCCCGACCCGGGACTGGTACTGGCGGGCACCAAATGCGCCGAGGGCATGATGTGTTTGAACAGGCAGTGTCAGAACGTCAGCGTGTTCGGAGTGCACCAGTGCTCGGGGAAGTGTCACGGCAGAGGGGTGTGTAACAATAAGAAGAACTGCCACTGTGAAGCTCATTGGGCGCCCCCGTTCTGCGAGAGGGCGGGGTTTGggggcagtgtggacagtggaCCAATGAGATTGGCAGCTGACAGCCGGGCGGTGGCGGTGGGGCTGGTGGTCAGTGTTCTGGTCCTGCTGGCCGCCGGGCTGGTGGTCTGTCTGAAGAGGAGGACTCTGGTCCAGCTGCTCTTCGCCAACAAGAAGAGCACCATCCAGAAACTCAGGTCGGTGGGATGGAGTAGAGCCCCCAGTCCTCCTCAGACTCAGCCAGTATACAGAGGATCACCCCTCCACAAATCACCATCCAGAGCTGCCAGCTGCAGGTTAGAGAAGcCATCTCATCTCAGTGCTGAGCCTCTCCTCCCGCCTCCGAACTTCCACTCCCACAGTTTACGGCGGTTACCCCAGTTCCCCGCCCAGTGTCGGCCCCTCCACATCAGCCACCCCATGCCAATCACGCTGGGTGTGGGCGTGGCAACCGGCCTGCAGGCCCTGCCTCCTGTGCCACCCCACAGGCCTCTGCCCAATCACACGCAGTCTCCGGTCAAAGCAGCACCTTTCCTCACGCTCCCCCGTCAGCTGCCCTACAGAGTCCATCAGGATCCTGATAAACCCAGTCCTCCCCAGAAGCCGCTGCCAGCAGATCCTCCGGTTAGAGGATCCAGACTGGGTCGCAGTACATCAGCAATAGGCGTGCACACACAGGGCCCCGGGCCCTTACCTATACCAATCCCTACTGTACCACTACCCCCACCTGCTATACCACAGCCAGCCAGGCCCCCACCACGGCTACCACAGTCTTTATACGAGCGCTGACATGAGGTCCCGGCGAGATGAGGACAAATTCCACCAGCGTATGAACACAATTATTTGCACTATGAAACTCTATTGGACCCACTGGTCACCCCTGCGGAACTCCTCGCAGTGTCTCTGAGTCTCAGAGAGAAGGAATCTGAGCCTTGGTGCTGTGCCTCAGAAAAGGTGCTCAGAGTCCTCACTCAGGTACTGCAGAACTGTCGaacatgaagaagaagaagaagaagaggaagaagaagaagaggaagatgtGTATTTATTGTCCGAAGAACACGATGCACTGTGGTCACCACTTTTTGTATGGTAGCATCATTGTGAACTTTTTATTACTCTGTTTGTGCTCTTCTTCTCGTCAGCGTTAGGCACACTCGATTCCAGATCACTGgagtaaattattttattcgtgctttttttttttttttttttacattttctctctATCTGGGGGGAACAACATGTGACATTACTTTGTGATCATTTACACTTTATTGGAACAGATTAGTGAGCGGGTGCTGTGAATTATAGAACTAAGCCTACTTGAAAGCAACCAGAGTGACTTAGAAACTGGAGCTTGAATATAAACtgcatttagaacatttaaaaaggttttagaGACAAACGCTATACTTATAATTTCTgtttactatttttacactataGTGAGGAACCATAGATAAGTCAGAAATGTTAACTTAGAGCTTAAAGTCCacaaattaaatgcaaacaGAATGCAAAATGTTTGGGAAAGTGCACCGCTGTTGCAGAAGGACTACTTTAAACATAGCTTGAAAAtgctaaattacattaaaaaacattgtgcTAGTTTTCTAGATTAAGATTAAGTCTAGTCAAGGACTACAGAGAGTTTTAAATgggtatttactattatttgcacataaattcctttaattttccaaaaaaaaaaaagaaaaaaaagaaaaacaaccaatcaggtattaaggagcagtaaactgAAGTGCAGCTTTTCAGTGagattctccagcactaaggctgggtgcagcagcattagcattagccgctaaccacagcattagctctttcgctgttaaGAGGCGAGTACACAATACTGTAAAAgcacgtttaccatgttaaacaaGCTACGCGAGagaaaccgctagctgatagtgatATCAGGCGGAATTTACTAGCACTGCTAGtaaagcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104129 lncRNA upstream 61422 970551 ~ 977452 (+) True G77215
TU104104 lncRNA upstream 101641 936248 ~ 937233 (+) True G77198
TU104103 lncRNA upstream 103196 918337 ~ 935678 (+) True LOC103037215
TU104116 lncRNA upstream 125214 913108 ~ 913660 (+) True G77207
TU104111 lncRNA upstream 130594 907945 ~ 908280 (+) False G77203
TU104164 lncRNA downstream 58707 1238344 ~ 1238806 (+) True G77245
TU104180 lncRNA downstream 86200 1265837 ~ 1266074 (+) True G77259
TU104327 lncRNA downstream 164459 1344096 ~ 1345264 (+) True G77375
TU104329 lncRNA downstream 165706 1345343 ~ 1346504 (+) False G77376
TU104328 lncRNA downstream 165837 1345474 ~ 1349654 (+) True G77376
XM_022672449.1 mRNA upstream 5308 1015833 ~ 1033566 (+) True LOC103042422
XM_022672556.1 mRNA upstream 104891 883297 ~ 933983 (+) False LOC103037215
XM_007255088.3 mRNA upstream 200721 834977 ~ 838153 (+) True eef1akmt2
XM_022672554.1 mRNA upstream 224203 776124 ~ 814671 (+) False arhgap5
XM_022672559.1 mRNA downstream 7483 1187120 ~ 1203142 (+) True LOC103043042
XM_022672563.1 mRNA downstream 124430 1304067 ~ 1318118 (+) True LOC107197738
XM_022672564.1 mRNA downstream 139782 1319419 ~ 1329088 (+) True gcfc2
XM_022672570.1 mRNA downstream 290378 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA downstream 290382 1470019 ~ 1479658 (+) False LOC103037734
TU104123 other upstream 30032 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 406502 631714 ~ 632372 (+) True G77154
TU103901 other upstream 518284 519633 ~ 520590 (+) True G77059
TU103782 other upstream 905714 106902 ~ 133160 (+) False ldah
TU104376 other downstream 305033 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 513719 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1720497 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1720497 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 2236531 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile