RNA id: XM_022672564.1


Basic Information

Item Value
RNA id XM_022672564.1
length 2597
RNA type mRNA
GC content 0.49
exon number 18
gene id gcfc2
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1319419 ~ 1329088 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTATTGGTCGCCCCGGCGcgctgtgttcaggtgtgtgtgtgtgtgtggtagaggtGGGTCAGTAAGATGTTTAAGAAAACGAACCGGAGGAATTTCAGAGCGCGGAGAGCGGAGTCcagcgaggaggaggaggcggagaaAAGCCCCGCCGCCGCCGCGGAGAGAGAAGCGGAGCCCCCGGCCCCGAGCTCCACACTGATTAACGCGCCCCGCAGAGGGATTTCCTGCAGCTCCAAACCGAGCGCGACCCCTCCCCGCACTGCCCGCTCCGAGAGCCCTGACTGCGGGGAGCCTGAGGACCCCCAGCCGCCCGCCGGTAAACCCCAGACCCCCGGACAAACTCCCGGTCAGACCCTCAGCTTCAGCGGGGAGAGAGACGgtgCAGATGAATCTGAATTCAAATTGAAAAGGTCCATCAACAAAGATGTGATTTTCCAAGCTCGCAAAAAGGAACAGTCGCCTGTTAAGTTGACCAAAACACAAGCAGgtGTGAAAGATGTGGATGTTAGTGAGCGCTCTGATAGCACAGCGGGGAGTTCTGCGGAGGACATCCCTCCAGACAGCGAGAGCGACAGTGAAGTTCAGTCTACATCTTCCAGAACTTCCAGCTCTTCTTCAAAACCACAGAAAGTTAACATCCCTGACTCTAAGAAGATCCGTGCAGTTAAGGAGCAGAGGAGGAGAGCTCGAGCCCAGCAGGACTACATCCCTCTAGATGAGGATCGGGAAAGCACTCCCAATAGATCAATAGACGGAGAGGGGGACCCGAGCGATGAGCATCGAGACAGTGATGATGAGCCAGATGATCATGAACGCAGAATCGAATTTGCACCCAAATCCAAAACCGTCAGGGAGAGAATGGCTGAGAAAATGGgTGGGAGTTCGAGTGAAGAGAGTGAGTCTGATAGCCAGAAGGAGGAAGACCAGCACCTCTGGGAGGAGCAGCAGATAAGAAAAGGAGTCAAAAGACACCAAAAGCAAAGCAGAGCCCGGCCTCTCAGACAGAAGAAAACGGTTAACATCCCTGAGACACTTCCCCCGGTCAGCATCAATATCATCAAAAGGAGAATCACTGGAAAGCTGGAGTCTCTGAAGGAGGTTCACAGAGCTCGGGAGGCGGAGCTCCGGAGGATGCAGCTGGACATGGAGAGCGCCAGAAGCTCTCTGGAGAACCTGGAGAACTACCCTGCTGATGAACAGCTCCGATTCTACCGCACCATGAACATCTTCTCACAGAATATGTTGGAGTGCCTTTCTGAAAAGATGGCATTAATAAACTCAGTGGAGCTGGATATGCACAGTCTTTATATTGATCAGGCGGAGTCTCTCTTGTCTCAGAGAAGACAGGAAGTGCAGCAGGAATCCACACGCCTCCAGCAGTTAACCTACAGCACTAATGCACAGAGTAATGGGGAGACGCTGGTGAAGACTGACCCACCAAAAGAAAGTGCACACATGGAGGATGATTGTGAGATTTTTCCAGCTGATTTGGAAGCAACAGCAGAGCAGGAGGCTGAGCTGCAGAGCAAAAGAGCTGACATATTGAAGAGATCTCAGGAGATATTTTCTGATGTTCAGGAGGATTTCTGGGATGTGAGGAAAATCTTGTCCAGGTTTAATGAGTGGCGGGTCTCCTTCCCAGAGTCCTACAACAATGCCTACATTGGTCTGTGCCTCCCTAAACTCTTAGCTCCACTAATACGACATCAGCTCATTGGCTGGAACCCACTCAAGGCTGAAGGTGAAGATTTTGAGGCGCTGCCATGGTATTCTGCTGTTGAAAACTTCTGCCATGGGCAGGGTTATGAAGAATCTGAAAATGCTGACAAGAAAACACTTCCTGCTATCATAGAGAAGTCCATCCTGTCCAAAATGCAAGGTTTTGTGGAGCTGGTCTGGGATCCTTTGTCTCTGCAGGAATCTCAGTGTCTGGCGTCGCTTTGCAGGAGAATACAGGAGGATTACTCTGTGTTTGATGGGGAACAAAGCAAACCTGTGAAGGCCTTTATGGAAGCTGTTATCCAGAAACTGAAAGGTGCAGTGGATAACGATGTCTTCATCCCATTATATCCAAAAAGCTTTTTGGATGATAAGACTTCCCCACAGTTCCAGTTTCAAAACCAGCAGTTTTGGTGTGCTGTTAAGCTACTTGGAAACATGGCCTTATGGGATGGTTTGGTTGCAGAAAGTGTTCTTAAGGAGCTGATGCTGGATAAACTTGTTAATCGTTACTTGATGATGACCCTCCTCAACGAGTCCAGCCCAAAACATGTGATCCAGAAATGCAAGAAGATCACCAGTTGTTTTCCAAACTCATGGTTTGTGGATCTGAGCTCCGGATCATCTATACCTCAACTTCAGAACTTCAGCAAACACCTGGTTCAGACGACACATTTAATATGTAGAGATAACAAGGACACAGTCAGCTGCAGGACGCTTCTCTCTGATGTGATGAACATTCTTGAGACCATCAGGGCATCTGAGAATATGAAGACTATTGCACGAACCTACAACTGTCAGGATTTACTGGAATCACTTCATAAGTCATAGTTTTATAATgctgtaataaatatatttttgtaactttgaaagaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09061 GCF, C2orf3; GC-rich sequence DNA-binding factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104180 lncRNA upstream 53345 1265837 ~ 1266074 (+) True G77259
TU104164 lncRNA upstream 80613 1238344 ~ 1238806 (+) True G77245
TU104126 lncRNA upstream 268477 965814 ~ 1050942 (+) True G77214
TU104129 lncRNA upstream 341967 970551 ~ 977452 (+) True G77215
TU104104 lncRNA upstream 382186 936248 ~ 937233 (+) True G77198
TU104327 lncRNA downstream 15008 1344096 ~ 1345264 (+) True G77375
TU104329 lncRNA downstream 16255 1345343 ~ 1346504 (+) False G77376
TU104328 lncRNA downstream 16386 1345474 ~ 1349654 (+) True G77376
TU104330 lncRNA downstream 18147 1347235 ~ 1349654 (+) False G77376
TU104325 lncRNA downstream 39014 1368102 ~ 1368585 (+) True G77373
XM_022672563.1 mRNA upstream 1301 1304067 ~ 1318118 (+) True LOC107197738
XM_022672559.1 mRNA upstream 116277 1187120 ~ 1203142 (+) True LOC103043042
XM_022672557.1 mRNA upstream 139782 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA upstream 139782 1038874 ~ 1179637 (+) False adam12
XM_022672449.1 mRNA upstream 285853 1015833 ~ 1033566 (+) True LOC103042422
XM_022672570.1 mRNA downstream 140927 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA downstream 140931 1470019 ~ 1479658 (+) False LOC103037734
XM_022672573.1 mRNA downstream 169034 1498122 ~ 1514730 (+) True mthfd1
XM_022672574.1 mRNA downstream 199882 1528970 ~ 1563180 (+) True c9h15orf52
XM_022672575.1 mRNA downstream 203202 1532290 ~ 1563180 (+) False c9h15orf52
TU104123 other upstream 310577 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 687047 631714 ~ 632372 (+) True G77154
TU103901 other upstream 798829 519633 ~ 520590 (+) True G77059
TU103782 other upstream 1186259 106902 ~ 133160 (+) False ldah
TU104376 other downstream 155582 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 364268 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1571046 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1571046 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 2087080 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile