RNA id: XM_022672573.1


Basic Information

Item Value
RNA id XM_022672573.1
length 4715
RNA type mRNA
GC content 0.46
exon number 27
gene id mthfd1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1498122 ~ 1514730 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGACGCGTTTACGCTGAGTTTGGACTCGCAGAGGCTGGAGTTCAGTGTAGATACGTAAACTACGCTCGGGCTGTTCTCAGCGTGAGAGGCTCTGCTGCTGAAGTGCAGGAAAAGTTTGGAGTTTGCTGAACTGTTGAATTGATTCTCCAGAAACAGGGAGAGAAATCTCAGGAGACTCCACAGAAAATGCCAGGACAGATTATCAGCGGGAAGGAAGTCTCTGCtcaGGTGAGAGAGAGGCTGAAGAAGGAGGTGGAGGCCATTCTGGAGCAAGATGCAAACTTCAGACCAGGCCTGGTGGTGCTTCAGGTGGGAAACAGAGACGACTCCAACCTGTATATCAGTATGAAGCTGAAAGCTGCTGCTGAGATTGGAATTAATGCCACACATCTCAGACTTCCTCAGACTGCTACTGAAGATGAGGTCCTGCGGAGCATCAGGGAGGTGAATGAGAACTCGAGTGTTCATGGACTCATTGTACAGCTGCCTCTGGACTCCATTCACCGCATCGACACTGAGAAGGTCACCAACGCTGTAGCTCCAGAGAAAGATGTAGACGGTTTAACAAGCATAAACGCAGGAAAGCTGGCCCGTGGAGATCTCGACAAGTGTTTCATTCCCTGTACTCCTAACGGCTGCATGGAGCTTATCAAACAGACAGgTGTGTCTGTGCTAGGGAAAAGGGCTGTTGTGATTGGCCGCAGTAAGATCGTGGGCGCACCAATGCACGACCTTCTGCTCTGGAATCATGCTACTGTAACCACCTGTCACTCGAGAACCGCTGACCtggctgctgagGTGGGAAAGGCGGATATTTTGGTGACTGGGATTGGAAAGCCTGAGATGGTGAAGGGAGAGTGGGTGAAGAAGGGAGCAGTGGTCATCGACTGTGGTATCAATCATATTCCAGATGACACGAAGGCGAGTGGGAAGCGAGTGGTGGGTGATGTTGAGTTTGCCTCTGCTAAAGAGCAGGCAGCCTTCATCACACCGGTTCCAGGAGGAGTCGGACCCATGACTGTAGCCATGCTTATGCAGaatactGTTATTAGTGCCAAGCGCTTCCTTCAGGAACATAAACCAGGAAAATGGAATATCTCTTATACCAAACTCGACTTGCAGAGACCCGTTCCAAGtGATATCGTCATCTCTCGCTCTTGCGTGCCGAAACCCATCAACCACTTGGCGAGAGAGATCGGGCTTCTCTCAGATGAAGTGGAGCTGTACGGCAAGACCAAGGCCAAAGTTCAGCTGGAGACTATTGACCGACTTCGGGCTCAAGCTGATGGCAAATATGTTGTAGTTACTGGAATCACTCCCACACCTCTTGGAGAGGGGAAGAGCACCACTACGATAGGACTGGTGCAGGCTCTTGGTGCTCACCTCAACCGCAATGTGTTTGCTTGTGTACGCCAACCATCTCAAGGCCCCACATTCGGTATTAAAGGTGGCGCTGCTGGAGGTGGTTATTCTCAAGTTGTTCCTATGGAAGAGTTTAATCTGCATCTCACCGGTGATATCCACGCCATCACTGCTGCCAACAACCTGGTAGCTGCTGCTATTGATGCTCGGATGTTCCACGAGGCGACTCAGTCTGATAAAGCACTTTTCAACCGCCTTGTTCCACTAAGTGGAGGCCAGAGGAGGTTCTCTCCCGTACAGATCAACAGACTGAAGAAACTGGGAATAGAGAAGAGTGACCCCACCACGCTCTCTGAGGAGGAGATCACACGCTTTGCCAGGTTGGATATCGACCCCGAGTCTGTCACCTGGCAGAGAGTGCTGGACACCAATGATCGCTTCCTGAGGAAGATCACAATTGGCCAGGCTCCTACTGAGAAAGGCCACACCAGAACCgctCAGTTTGATATCACGGTGGCCAGTGAGATCATGGCTGTGCTGGCTCTCACCAGCAGTATGGAGGACATGAGGCAGAGGTTGGCTAAGATGGTGGTGGCCACAAGCCGCAGTGGAGACCCCATCACTACTGAAGACCTGGGTGTGTGTGGAGCGCTGACTGTGTTAATGAAAGATGCCATCAAACCCAACCTAATGCAGACACTTGAGgGGAATCCTGTGTTTGTTCATGCTGGACCTTTTGCCAACATCGCTCACGGGAACTCCTCTATTTTAGCTGATAAGATTGCTCTGAAGCTGGTGGGACCTGAAGGATTTGTAGTGACGGAGGCAGGTTTCGGTGCAGACATCGGGATGGAGAAGTTCTTTAACATTAAGTGTCGTTACTCTGGGCTGAGGCCTCATGTAGTGGTGCTGGTGGCAACAGTCAGAGCGCTGAAGATGCACGGTGGAGGACCAACTgtCACAGCTGGCATGCCTCTACCAAAGGAATACACTGAGGAgAATCTGGATCTGGTGGAGAAAGGCTGCAGTAACTTGAGGAAACAGGTGGAGAACGCTAAACACTTCGGGGTGCCGGTCGTTGTGGCAGTCAATGCCTTCAAGACAGATACTGATGCTGAAGTGCAGCTGATCTGTAAGCTCTCTAAAGAAGCTGGGGCGTTTGATGCGGTGCCGTGCACTCACTGGGCAGATGGTGGCGCTGGAGCTGTGGAATTGGGAAAGGCTGTGCAGAAAGCTGCAGAGGCTCCCAGCAACTTCAGCTtcctctacaacactgagCTGCCCGTCGCTGATAAGATCAGAATTATTGCACAGAAGATTTACGGGGCCGACGACATCGAGCTCCTCCCAGAGGCTCAGCGTAAAGTAGAGCTGTACACAAAACAGGGTTTTGGTAATTTGCCGATTTGTATGGCGAAGACCCACCTGTCTCTTTCTCATGATGCTGAGAAGAAAGGTGTGCCCACCGGTTTTGTTCTGCCTATTCGTGATATTCGTGCCAGTGTGGGCGCCGGCTTCCTCTATCCGTTGGTTGGCACGATGCCGACCATCCCGGGCCTCCCAACACGTCCGTGCTTCTACGACATTGATCTCGATCCAGTGACTGGAGAAGTCATCGGACTCTtttagaggagagaggagacGCGTGTTGAGCCGTAATGTGACCCACCTGTGTGCTGGAGatgtttttaacagtaaaattaaGAAGATAAACCAGTATTGTATTAAGTGctgacatttttttctgtagttttcAGATAGTCTTCCTAGTTTAGGAGTTTTTAGATGAGGTAGGATGGTGCTGCTGTCagcttcaataaaaaaaaaaaggcaagagGAATCTAAAATTTACTTTCAGAAACTGCACCTTTTATTCCACCGTTATGGTTTCCATTTACATTGGTTAGATGAGtagctttatttcatttaatgttctttaatgttaattttggAATATTAACACACACATGTTTTGAGTTTTTTAAATTCCCAGTACATCTGGCAGCACATCCACGACACGTGCTGAAGTTTTGCACAAGAGCACGATGAGTAAAGCCGGGAGTATGTTCATAAAACACAGGAGTGCTGAACTATAACCAGGTGTCCAGGTGTTCACattcttcttcctcttaaatACTGTAGAAATGCAGCCTCTGGTGCTTCATGCTCTCACAACTGCCACCTTTATAGAACCTAGAAATTCCTCTGGAAACTATGAGAGCGTACAGTAAACAAGAACATGACTATTATtatgtttctgtttattatgtgtttttctcttcttttttttcgttGAGAAACATTGTAGAATATCTTTAGCAATACGATACTACAACACACTACATCCATTTTATCCACATTGGACCACtgagttaccgtattttttgcactatacagCGCACCGGATTATGAGGCATATTTTATCCACCACTAGTAAGGCACAGGGGTGTCTCCATTTTTTCCTATTAATTCTGCAGGGTTAGCGGCTAGCAATTAACAGCTAATGCAGCCCGACACAGCTACATGAGGAACCCTGAGCGAtgttagctagcagttcgtcccacgtagcttgttttaacacagtaaacatgcaggctacagtccaatatactctcctctgaacggcgaaaagCTAGCGCtgtagttagcggctaatgctaaggcagctccagtagtgctatccagggttggcagcaggcaacaggctgataatactacCTTGGAACAGCAAAAGActtagcgcttagcacggttagcggctaatgctaatgctgctagaaTATATTAGGAATGACATAAGGAGCTCCGGATTATGAGGCGCACTAATGATTTTTGcaaaaaatttaaggattttaggtACGCCTTATATTgcgaaaaaatatggtaattatggtacatatatagtaatttaaaaaatatggtcATTAAATTTCCACATTTCCGAATTTTCAAATAAcctacaattattaaaaaaaaaactggcattCAGTATCTTAACAGAgctagtattaataataatgagtgCAATCTTTTATACTTTACCAATGAATTAATGACTCAATGTGACTCAAACACTGGAGAAATGTGAATTTCTTTCTGTTGAACTGGAACATTTCAATATAATTATCACTCTGTGAAAAAGATGTTCCCATTTATTTCCATCACAGATGTGTTACATGGAGAATGTTTGttgtgattaaaaatgattaatccGTTAATTGTCTTAAGCATGAGTGAAGCCTTTTTTACTGGATGTTCTGCAATTAAAGTTGTCTTATTTGTCTTATATCTTtctttttgtgtatatttgcaATTGCTCTGTAATCCGTCATAAACTTGCTGTTTAAACTAA

Function

GO: NA

KEGG:

id description
K00288 MTHFD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104382 lncRNA upstream 3687 1494160 ~ 1494435 (+) True G77413
TU104377 lncRNA upstream 11801 1485833 ~ 1486321 (+) True G77411
TU104374 lncRNA upstream 14847 1480821 ~ 1483275 (+) True G77408
TU104366 lncRNA upstream 32852 1464906 ~ 1465270 (+) True G77403
TU104365 lncRNA upstream 33920 1463238 ~ 1464202 (+) True G77402
TU104357 lncRNA downstream 3032 1517762 ~ 1519995 (+) True G77396
TU104370 lncRNA downstream 28472 1543202 ~ 1551676 (+) False c9h15orf52
TU104450 lncRNA downstream 63547 1578277 ~ 1618327 (+) True G77447
TU104460 lncRNA downstream 139282 1654012 ~ 1655515 (+) True G77457
TU104468 lncRNA downstream 180434 1695164 ~ 1756066 (+) True G77464
XM_022672570.1 mRNA upstream 18464 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA upstream 18464 1470019 ~ 1479658 (+) False LOC103037734
XM_022672564.1 mRNA upstream 169034 1319419 ~ 1329088 (+) True gcfc2
XM_022672563.1 mRNA upstream 180004 1304067 ~ 1318118 (+) True LOC107197738
XM_022672559.1 mRNA upstream 294980 1187120 ~ 1203142 (+) True LOC103043042
XM_022672574.1 mRNA downstream 14240 1528970 ~ 1563180 (+) True c9h15orf52
XM_022672575.1 mRNA downstream 17560 1532290 ~ 1563180 (+) False c9h15orf52
XM_022672450.1 mRNA downstream 67026 1581756 ~ 1617335 (+) True plcb2
XM_007230365.2 mRNA downstream 130338 1645068 ~ 1647692 (+) True ankrd63
XM_022672452.1 mRNA downstream 183235 1697965 ~ 1708297 (+) True zfyve19
TU104376 other upstream 13072 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 489280 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 865750 631714 ~ 632372 (+) True G77154
TU103901 other upstream 977532 519633 ~ 520590 (+) True G77059
TU103782 other upstream 1364962 106902 ~ 133160 (+) False ldah
TU104477 other downstream 178626 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1385404 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1385404 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1901438 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 1902109 3416839 ~ 3416911 (+) True trnav-aac_3

Expression Profile