RNA id: XM_022672603.1


Basic Information

Item Value
RNA id XM_022672603.1
length 2808
RNA type mRNA
GC content 0.50
exon number 12
gene id rcor1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3309818 ~ 3324750 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTTGTGTTTGACAAAACCTGCTCGTTTCTCGGCGGTTTTTCGGTTCTGGGTGGAAATATATCGACTATCGGCTCTGTGAGGAAATGCTGGAGTTATTATTAAAACTAAGGTCGGCTAATGCTAGCTGTTATCTGTGTTAGCTCGGTGGCTAACTCTCTATCAgtgtagcctgtgtgtgtgtgtgtgtgtgtgtgtgtggagggggaggTGGggagttagcctgttagctaacagCGGAGCTAGCCGGCTATAATCCGGTTACTTCCATCAGTCGGAGTAACCTGCTCGCTCAGCGCGGTCGGTGCAGCgggctagctaactagctaacgacCCCGGAGACAGGCGCCAGTTCCCGGCCTGAGTTTATCGAGCGCCCGCTGGTTTAAGCGCACTTTGTGGGAACTTGTTTAATAGcggtttaatattatattcacacTCGGAGTTTAAGCAGAGGAGGCCCTTCGCCACAGATTAGCCTCCGGagcatctgctgctgctgctgctgcggtcGGTCGGGCTGCGTTAGCCGCTAGCAGGCGAGCCAGCGAGCAGCGCTGCGCGTTTCAGCCGCTAAAGTTCCCCGGCTTTGTCTCCGAGATGCCCGCGATGTTGGAGAAGGGCCCGGCGGAGATCTCGGGCAAGAGGAGAGGCAGGAACTCGGTAAACAACCCGGTCAAAAGTTTCACTTCGAACGGGAACAGTAACAATTCGTGGGAGGAAGGAAGTTCGGGCTCCTCAAGTGATGACGAGCATGGTGGTGCGGGAGGAATGCGAGTGGGTCCTCAGTACCAGGCAGTGGTCCCGGATTATGACCCCGAGGTAGCAAAGGCAAGCCAAGAGAGGGAGAACTTGGGAATGCTGGTCTGGATTCCCAACCAGAACTTGGCAGAGACTAAATTGGATGAATACATTGCAATCGCCAAAGAGAAACATGGGTACAATATGGAGCAGgCATTGGGCATGCTCTTCTGGCACAAGCACAACATCGAAAAGTCTTTGGCGGACCTGCCCAACTTCACCCCTTTCCCAGATGAGTGGACAGTGGAGGATAAAGTGCTGTTTGAACAGGGGTTCAGCTTTCACGGCAAGACTTTCCACCGCATACAGCAGATGCTTCCAGACAAATCCATTGCAAGCCTGGTTAGATTTTATTACTCTTGGAAGAAAACCCGCAGTAAAACCAGCGTCATGGACCGACACGCTCGCAAACAGAAGAGAGATCGAGAGGACAGTGATGAAGAAGGTGAGGAGACCAACTGCACCACTCCACCTAATCCAGAAGTAGAGGTGAacaaggaggagaaaaaagagCCACCAACTGTCCCAGAAAAGCCAGCACACGTGAAGAAAGAGACGCAGGGTCTGTCTGGCCGGAACCTCAACCGGGCCAAGAGGAAGCCACCCAAAGGCATGCACCTGAACCAGAGTGACGCCTCAGCCATGTCCAGCAGCGGTAATGCAGCTACCAGCGTACTGAGGCAACTGGACATGGAGCTCGTCACCATTAAACGACAGATCCAGAGcatcaaacaaaacaacagtgcTCTGAGAGAGACACTGGATACTGGAGTGGAGGAGTTCCGGCCTCCTGAGgtgaATCAGAAGTTTAATACACGTTGGACTACAGAGGAGCAGCTTCTCGCAGTACaagCCATAAGGAAGTACGGAAGAGATTTCCAGGCCATTTCGGATGTTATTGGCAACAAATCCGTTGTTCAGGTGAAGAACTTCTTTGTAAACTACCGGCGACGCTTCAATCTGGACGAGGTGTTGCAGGAGTGGGAGGCTGAGCACGGAGTGGAAGGATCAAAAAGCTCAGAGGAGGAGAAGATGGAGGTGTCGTCTGAGGAGGGCACCACCACCCCTGTACCACCAGAGGACCAGAAGGAGGAACCGACACCTACAGAAACGCAAACGCCCTCAGCCTCCTGAGTGCCCTCGCCACGGCCAGATGACCTCTCCTTAACCCAAACGCAATCCAGCTGATGTTACTGCTGTGCTGAAGAGGCACCAGGGCTTCTACAGCCCCCTGTGTAGCTGCTTAATACCAACCATTCCCACTCCTCTGTCCTTCCTCTGCTCCCTCAACCCAGCCCAACCCCCCGGACTCCGGCACGTTCTGCCAAACAGAAGCTCAAAACCTCATCAGAACCGAACGCGGAGTAAGAAATAAGGAATAAGGACGGATCAGCTTTATTTTAGCTGCTCTCTGCCAGCACAGATGGGCAGCGGTGCTTTTTAAGCACTGCTTTCACTTACTTTTCATAAACGTTGAGGATGTAAATGAATTCGCTGATCTGATTGGATGATCTTCCGTCCCAGCTTCACTGTACTTTGTTTCATGGTCCTTTAACACAGCCTATGTGAGTAGGTGCTGATGAAGTTGCCTGGTTATTCTCACTCTCTGTTTTAACTGTCCCACCCTCTCTAGTGgactttcactctttcactgaCCAATCTCTCTCATCTCATActccactccagcaaaccaAAATCTTCATTTCATGTTTCAGTTTTGTCTTTTTCCAGCAGTTCACACAGCGATCAGATTGAGTACGTGTTGTAATTTTAAATGACTTCGGTCCACAGTTCTATCATGAAtctatttatttgctatttgcttaaaaagtGTTTTCGAGTTTCAGGAGAGCGAAGATGTTACCAATAATAATGAGAGACTGTGTTTTAAGGGGGAATCTGGAATTTTGATGACTGGTCCTGTTTTCCTCTACATGATTGAAAGTGGAAAAGTGAATAATCTTTATCACTTAAGTTATTGGTGAAAAaatgatagtaataataataa

Function

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11829 RCOR1, COREST; REST corepressor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104928 lncRNA upstream 9147 3260466 ~ 3300671 (+) True G77804
TU104933 lncRNA upstream 12376 3220621 ~ 3297442 (+) True G77808
TU104923 lncRNA upstream 96953 3212557 ~ 3212865 (+) True G77799
TU104915 lncRNA upstream 103604 3197217 ~ 3206214 (+) True G77792
TU104834 lncRNA upstream 323108 2950074 ~ 2986710 (+) True G77724
TU104955 lncRNA downstream 69630 3394380 ~ 3394876 (+) True G77817
TU104988 lncRNA downstream 217502 3542252 ~ 3549615 (+) True G77847
TU105124 lncRNA downstream 441030 3765780 ~ 3824274 (+) False g2e3
TU105125 lncRNA downstream 473268 3798018 ~ 3824872 (+) False g2e3
TU105133 lncRNA downstream 592054 3916804 ~ 3918653 (+) False G77961
XM_022672602.1 mRNA upstream 13165 3261791 ~ 3296653 (+) True tecpr2
XM_022672596.1 mRNA upstream 352388 2908609 ~ 2957430 (+) True eif2ak4
XM_022672594.1 mRNA upstream 445379 2760670 ~ 2864439 (+) False LOC103030398
XM_022672595.1 mRNA upstream 445379 2787948 ~ 2864439 (+) True LOC103030398
XM_022672489.1 mRNA upstream 835027 2471398 ~ 2474791 (+) True LOC103026149
XM_022672604.1 mRNA downstream 7181 3331931 ~ 3359744 (+) True traf3
XM_022672606.1 mRNA downstream 40992 3365742 ~ 3393158 (+) True LOC103028495
XM_022672605.1 mRNA downstream 40992 3365742 ~ 3392659 (+) False LOC103028495
XM_022672460.1 mRNA downstream 71709 3396459 ~ 3475761 (+) True LOC103028182
XM_007257917.3 mRNA downstream 157388 3482138 ~ 3484662 (+) True foxg1
TU104827 other upstream 331724 2900134 ~ 2978094 (+) True G77722
TU104828 other upstream 331724 2900134 ~ 2978094 (+) False G77722
TU104477 other upstream 1612837 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 1824768 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 2300976 1005129 ~ 1008842 (+) True G77212
trnav-aac_2 other downstream 91418 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 92089 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 95177 3419927 ~ 3419999 (+) True trnav-cac_1
TU105324 other downstream 964757 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 2127365 5452115 ~ 5527965 (+) False LOC103025550

Expression Profile