RNA id: XM_022672606.1


Basic Information

Item Value
RNA id XM_022672606.1
length 2172
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC103028495
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3365742 ~ 3393158 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCCGGCAGGTACAGGGCGAGAGACGCAGCGGCAGCGGAGCAGCAGCGGGGAGAGGCAGCGAGGCAGCGGCTGGGTTGATTATCTAACGGCCCCTGGTGAGGACTCGAGCTGAGCTGGGCGTGCTCCTCACTGTTCTACTTCCACAAGGGAAAAACAGAAGTAGAGAAGCGGAGTTACACAATACCAGCTGTTTAAAAGCGGCAGCGGCATCATGTTCAGCTGGGTCAACAAGGAGCAGGGAGGCAGAAACAAGGAGGGCGACATGTTTCAGACCGTCACCGAGGGCCTGCAGAGCCTCTACGCCAAGAAACTGCTGCCTCTAGAGGAAGCCTACCTCTTCCACGACTTCCACTCTCCTGCGCTGGAGGAGGCGGATTTCCAGAGCAAACCCATGGTGCTGCTGGTGGGCCAGTACTCCACCGGAAAGACCACCTTCATCAGGTATCTCCTGGAGCAGGATTTTCCTGGTATGCGGATCGGGCCTGAACCAACTACAGATGGCTTCATCGCTGTGATGTATGGGGAGAATGAGGGGGTCGTCCCTGGTAATGCCCTGGTGGTGGATCCTAAGAAACCCTTCCGGAAACTTAACGCTTTTGGAAATGCTTTTCTAAACAGGTTCATTTGCTCACAGATGCCCAATCAAGTCCTGCAGAGCATTAGCATCATCGACACACCGGGCATACTGTCTGGGGAAAAGCAGCGCATTAGCAGAGGTTATGATTTCTCTGAAGTCCTGCGCTGGTTTGGTGAGCGGGTGGATCGCATCATCCTCCTGTTTGATGCTCACAAGCTGGACATCTCTGATGAGTTCTCCGAGGCCATCAAGGCCTTCCGTGGTCAGGATGACAAGATACGCGTAGTCCTGAACAAGGCCGACCAGGTGGACACGCAGCAGCTGATGCGGGTCTATGGGGCGTTGATGTGGTCTCTAGGGAAAGTCATCAACACCCCAGAGGTAGCGAGGGTCTACCTGGGCTCCTTTTGGGCCAAACCACTGCAGAACACAGACAGCCGCCGGCTCTTTGAGGCTGAAGCTCAGGACCTTTTCCGGGACATTCAGGCGCTGCCGCGAAACGCCGCCCTGCGCAAACTCAACGACCTCATCAAGAGAGCCAGACTGGCTAAGGTTCACGCCTACATCATCAGCTTCTTAAAGAAAGAGATGCCGTCTCTGTTTgggaaggagaagaagaaggaggaacTGATCGCCCGCCTGCCTGAGATCTATCAGATGCTGCAGAGAGAGTACCACATTTCACCCGGAGATTTCCCCAACGTCACCAAGATGCAGgAACAGCTAATGCACTACGACTTTAGCAAGTTCCCCTCCCTGAAAATCAAGCTGATTGAAGCGGTGGACAAGATGCTGAGCAACAAGATCTCAGGGCTGATGACCATGATCCGGGAGGAGGAGGGCAAGCAGCCCACTCAGGTTGTGACGGGCGGGGCGTTCGAGGGCTCGGAGGACGGACCGTTCGGGCACGGGTACGGCGAGGGCATCAGCGCCGGGGCCGATACAGAAGACTGGATCGTGAGTCGTGATAAACCGCGCTACGACGAAATCTTCTACACCCTCATGCCTATCAACGGCAAGGTGACTGGAGTCAACGCCAAGAAGGAGATGATGAACTCGCGTCTGCCAAACACAGTGCTCGGAAAGATCTGGAAGCTGGCAGACTGCGACAAGGACGGCATGCTGGACGACGAGGAGTTCGCCTTGGCTCAGCATCTCATTAAGGTCAAGCTGGAGGGATTCGAGCTGCCCTCAGAGCTGCCTGCACATCTGGTACCTCCAGCTCACAGGAAGAACCCCACTGCAGACATCCTGTACAACCACCAGGAGGACTGAGAACTTTGAAATTTTTTAACCACGTAACTCACAACCACATAACAACTTTCCCACTACTGATGGTGTGGCACCCAGACTCCTGCTTTCTTAGGTTGTTGAAGGActttcatcttcttcttcttcttcttcttcttcttcttcttatatgAAGCCTTATGATGTCTTTTTTGTGCTCAGTGACTGATGCTGTGTGATACTGTGTAAGATTGGCCTATGCAATGTTTGTTCTCTAGTACTTTGtgagatacagtatatatacagtactgtgcaaaagttttaggcaccaaagcaaattacactaatccatttatctcagaa

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12477 EHD4; EH domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104946 lncRNA upstream 6009 3322085 ~ 3359733 (+) False traf3
TU104928 lncRNA upstream 65071 3260466 ~ 3300671 (+) True G77804
TU104933 lncRNA upstream 68300 3220621 ~ 3297442 (+) True G77808
TU104923 lncRNA upstream 152877 3212557 ~ 3212865 (+) True G77799
TU104915 lncRNA upstream 159528 3197217 ~ 3206214 (+) True G77792
TU104955 lncRNA downstream 1222 3394380 ~ 3394876 (+) True G77817
TU104988 lncRNA downstream 149094 3542252 ~ 3549615 (+) True G77847
TU105124 lncRNA downstream 372622 3765780 ~ 3824274 (+) False g2e3
TU105125 lncRNA downstream 404860 3798018 ~ 3824872 (+) False g2e3
TU105133 lncRNA downstream 523646 3916804 ~ 3918653 (+) False G77961
XM_022672604.1 mRNA upstream 5998 3331931 ~ 3359744 (+) True traf3
XM_022672603.1 mRNA upstream 40992 3309818 ~ 3324750 (+) True rcor1
XM_022672602.1 mRNA upstream 69089 3261791 ~ 3296653 (+) True tecpr2
XM_022672596.1 mRNA upstream 408312 2908609 ~ 2957430 (+) True eif2ak4
XM_022672594.1 mRNA upstream 501303 2760670 ~ 2864439 (+) False LOC103030398
XM_022672460.1 mRNA downstream 3301 3396459 ~ 3475761 (+) True LOC103028182
XM_007257917.3 mRNA downstream 88980 3482138 ~ 3484662 (+) True foxg1
XM_022672461.1 mRNA downstream 420725 3813883 ~ 3824815 (+) True g2e3
XM_022672610.1 mRNA downstream 432470 3825628 ~ 3853124 (+) True scfd1
XM_022672611.1 mRNA downstream 460448 3853606 ~ 3858455 (+) True LOC103022404
TU104827 other upstream 387648 2900134 ~ 2978094 (+) True G77722
TU104828 other upstream 387648 2900134 ~ 2978094 (+) False G77722
TU104477 other upstream 1668761 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 1880692 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 2356900 1005129 ~ 1008842 (+) True G77212
trnav-aac_2 other downstream 23010 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 23681 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 26769 3419927 ~ 3419999 (+) True trnav-cac_1
TU105324 other downstream 896349 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 2058957 5452115 ~ 5527965 (+) False LOC103025550

Expression Profile