RNA id: XM_022672634.1


Basic Information

Item Value
RNA id XM_022672634.1
length 1185
RNA type mRNA
GC content 0.46
exon number 5
gene id pacrg
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 5345136 ~ 5440734 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTACCATGGCAGCGCCGCCGCGTCCGTGACAACCCGAGCAGCAGCGCAGAGAGACGAGCTGCTACAGCACCAAACAAAAcctagaaaaaacaaacaaaacgaGACAAAAGTAGTGAAATAAGGGATAAAAACATAGATAAGGAGCGGAGATATCTGCAGAGATGTGTTCCAACGTGAGAAGCGCAGGTTTCAGTAGAGGAGAGTTGCTGAAGACGGAGGGCTTCACCGTGAAATCCACCATGAAGAACTCTGTGGTAGTGGGTCCTCCTGCAGCAGGAGCGTTCAGAGAGCGCCCATACAAACCCACGTCCTTCCGCAAGTTCTACGAGCGCGGGGACTTCCCTATCGCCCTGGAGCACGACACCAAGGGCAACCGCATCGCCTGGAAGatgGAGATCGAAAAGCTGGACTATTTTCACTACCTGCCGCTCTTCTTTGACGGTTTGTGCGAGACGGTTCACCCGTGCGAGTTCTTTGCCCGGCAGGGAGTTCACGACATGCTGGAACATGGTGGAACCAAAATCCTGCCTGTCATTCCACAGCTCATCATCCCCATAAAGAATGCTCTGAACACACGGAACCTGCAGGTGATCTGTACCACTCTGAAGGTTCTGCAGCACCTTGTGATATCTGGGGAGCTGGTCGGGGAGGCGCTGGTACCGTACTACAGACAGATCCTGCCCATTCTAAACATATTCAAGAACAAGAACTtaaaCTCCGGGGACGGTATCGACTACAGTCAGCAGAAGCGGGAGAACGTTGGAGATCTGATCCAGGAGACACTGGAGGTTTTCGAGCGATATGGAGGAGAGGACGCCTTTATCAACATCAAATACATGGTGCCTACATATGAATCCTGCCTGCTCAATTAACACAGACATTTTATCACACACAATCTATATACATAGGGAAACACATGCAGGTACAGAtatacatcatatatatatatatattatatatatatatatatatatatatatatagggagaGGGCGGAGATGTTTAATGAAACACACataccaaaaatatataatatatttattataataacataCATCTAGCGATGCTGCACTCTGAGCCTTACTCCACTCTCTTGTCTACAGCTGAAAATCAGTTTGAGTGTTTGTTTTCTCCTGTGAACATTCaaacaataaatgtttaaattaaacatttttctgatgaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105535 lncRNA upstream 50930 5292755 ~ 5294206 (+) True G78282
TU105536 lncRNA upstream 137723 5205082 ~ 5207413 (+) True G78283
TU105402 lncRNA upstream 854482 4477866 ~ 4490654 (+) True G78172
TU105341 lncRNA upstream 991859 4351453 ~ 4353277 (+) True G78122
TU105335 lncRNA upstream 1024809 4318054 ~ 4320327 (+) True G78117
TU105673 lncRNA downstream 1116499 6557233 ~ 6563936 (+) False G78397
TU105674 lncRNA downstream 1116764 6557498 ~ 6563936 (+) True G78397
TU105686 lncRNA downstream 1183967 6624701 ~ 6627742 (+) True G78408
TU105688 lncRNA downstream 1233069 6673803 ~ 6674290 (+) True G78409
TU105694 lncRNA downstream 1267802 6708536 ~ 6708828 (+) True G78414
XM_007258937.3 mRNA upstream 55370 5282014 ~ 5289766 (+) True ptafr
XM_007258935.3 mRNA upstream 142695 5179637 ~ 5202441 (+) False kdm1a
XM_022672465.1 mRNA downstream 11632 5452366 ~ 5530055 (+) True LOC103025550
XM_022672635.1 mRNA downstream 1187259 6627993 ~ 6683113 (+) True mrps5
XM_022672636.1 mRNA downstream 1187272 6628006 ~ 6683113 (+) False mrps5
XM_022672640.1 mRNA downstream 1332992 6773726 ~ 6826064 (+) True LOC103028352
XM_022672642.1 mRNA downstream 1392851 6833585 ~ 6850452 (+) False LOC103028659
TU105324 other upstream 1046952 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 1925137 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 1928225 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 1928896 3416168 ~ 3416240 (+) True trnav-aac_2
TU104828 other upstream 2367042 2900134 ~ 2978094 (+) False G77722
TU105595 other downstream 11381 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 1416675 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 2153973 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 2215595 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 2215595 7656329 ~ 7729001 (+) False fam167b

Expression Profile