RNA id: XM_022672641.1


Basic Information

Item Value
RNA id XM_022672641.1
length 2269
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC103028659
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6833585 ~ 6850452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGACTGCAGTGTTTTTTCAGAGCATTAAGAAAAGTCTAACTGTGTagagtatttttttctctccaccCAAATTCATACTTGCCTGAAAACGGGTGTGTGTAAATAGACTAATCCGGTTTGGTATGCTAATCACAGCATGGTGCAACACAGGCGCTGTACAGTACTGCATCAATGCAGCCAGTTAATCTTTAACACACTTATTCCAGTTACCATAATTACATCTGTTATATGAAAAGGGAGTTTTACAGTATTACCTGTAATGGAAATGCTTAATTTTCGCTTCAGAGACATTACAGGCTGGATAAACTGTCATAAATCTGAACATGCAAATCTCTCCAAGTTGATTGGCCAATGCTTTGGGGGAGCCTTTCAGCGGAAACTCCAAAGACTCTGAAAGTTCTGTTCAGTAGAGAATGGACGTCTAGCTTAACAGAGCTGTTCAGAGCAGTTTAGTGGAGCAGCCTTGGATCCTGACCTCTTGAACTTACCTGTAGTAACCTGAGGTATTGCATCACTGCAGGTAAGCATGAAGTTTGAGAACATTCTGACTGAGACAGATGGGTTCGGGCGCTACCAGATTGCGATACTTGCTCTGCTGGTGTTTCCACGCATGACCCTCCCAGGTCACTTCCTGCTGAACAACTTCATTGGCGCCATCCCCTCCCACCACTGTGATTTCAGCTCTCTGGACACTTATGGTATTTTTGAGAATTTGACTCAGGAGCAGAGACTGACTGTCAGTATTCCTCAACACGAAGATGGAACCTTCGCTTCCtgtcacatgttttcagaaGCTCAGTTCCACCTGCTGACAAATACTTCGAACACTACAGAGCTTCCTGTGGTCCGCTGTCAGGATGGATGGCACTTTGACCACAGCACTTTTAAATCAACGCTGGCCACCCAGTTTGATCTGGTTTGTGACACCAAGGGACTGAACAAAGCCTCGGCCACCATTTTCTTCACCGGCGTCATGTTTGGGGCTGTGTTCTTTGGTGTTATGAGTGACAAgtATGGCCGCAGGAGCATGCTGTTGCTCTCTTATATCACATCTATAGTCTTCAGTGTGGCCAGTGCCTTCTCTACAAGCTTCCCCATGTTTGCAACATTTCGTTTTCTGACTGGCTTCAGCCTGGCTGGAATCAGCATAATATCCATCGTCCTCAGTATTGAGTGGGTGGACATTGAGCACCGCACCTTTATAGGTGTGATTGGTAGCATGTTTTGGACAGTGGGCAACATGCTGCTCGGTGGCATCGCTTATCTTGTCACTGACTGGAGATTGCTGATCATCACAGTTACCTCCCCTCTGTTGCTCGCTGGAGCCACCTGGTGGTGGATTCCTGAGTCTGCTCGGTGGCTGATCGTCAATGGGCGGACAGATCGGGCCTATTCGTACCTGCAGAAGTGTGCCAGTGTTAATGGCAAAGAAGAGTTCACATCCAAAGTCAAACTAGAGaCCCTTTCATCTGTTGCAGAAGTAGATAACCACGGTCACAATTACACTTACTTTGATTTAATCAAAACTCCACGCTTAAGAAGGCTGACCCTCTTCACAGGCATAGTGTGGTACGGTGTGGCCTCCACATACTATGGCATCAGTTTAAACCTCAAAGGCTTTGGCCTGAACCTCTACCTGACCCACTTCATCTACAGCGCCATAGAAGCACCAGCTAAGTTCTTTATCTACTTCAGCCTGCAGAAGATTGGCAGAAGACCTAATCAAGTGGGCACATTGTTACTGACTGGAATCTGCATCTTCATCAACATTGTTGTGCCTAAAGaATATTGGACGTTCCGCACCATTATAGCAGTGTTGGGTAAAGGGCTGTCTGAAGCTTCCTTTACCACAGTGTTCCTGTACACCACAGAGCTCTACCCTACAGTCTTACGGCAGAACGGGTTGGGCTACAACAGCTTCGTAGCTCGACTGGGCGCCTCAATCTCTCCCCTCATCATGTTACTGGAGGATGTGTGGCGCCTCCTCCCTCAGGTAGTCTTTGGCACAATGGCCATCGTCTCCGGCCTGGTGGCATGCCTCCTCCAAGAAACCAACAACACTCGACTGCCTGAGACCATTGAGGACATTGAAAAAACAAGAAATCAATCTGCCACCACACAAGAGCAGAGTGATATCCCACTGAAAACTGCAGCCCCTGCGGAAAAGGACCATTAACACTAACATGCCCACGCATAGCTCAATTTAAACTTTAACTTTCAgtgtgttaataaaaaaatgccttaataaaaactgacattactAACCTG

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105770 lncRNA upstream 15622 6814777 ~ 6820562 (+) True G78470
TU105771 lncRNA upstream 21610 6812532 ~ 6814574 (+) True G78471
TU105709 lncRNA upstream 85874 6749685 ~ 6750310 (+) True G78426
TU105708 lncRNA upstream 87648 6747979 ~ 6748536 (+) True G78425
TU105696 lncRNA upstream 119996 6713456 ~ 6716188 (+) True G78416
TU105780 lncRNA downstream 12525 6862977 ~ 6872405 (+) False LOC103024862
TU105832 lncRNA downstream 49430 6899882 ~ 6906124 (+) False G78521
TU105833 lncRNA downstream 49430 6899882 ~ 6906647 (+) True G78521
TU105840 lncRNA downstream 67164 6917616 ~ 6924022 (+) True G78528
TU105849 lncRNA downstream 76902 6927354 ~ 6928056 (+) True G78531
XM_022672640.1 mRNA upstream 10120 6773726 ~ 6826064 (+) True LOC103028352
XM_022672635.1 mRNA upstream 153071 6627993 ~ 6683113 (+) True mrps5
XM_022672636.1 mRNA upstream 153071 6628006 ~ 6683113 (+) False mrps5
XM_022672465.1 mRNA upstream 1306129 5452366 ~ 5530055 (+) True LOC103025550
XM_022672634.1 mRNA upstream 1395450 5345136 ~ 5440734 (+) True pacrg
XM_022672466.1 mRNA downstream 6902 6857354 ~ 6872405 (+) True LOC103024862
XM_007230056.3 mRNA downstream 22111 6872563 ~ 6884096 (+) True LOC103025489
XM_007230067.2 mRNA downstream 35663 6886115 ~ 6894577 (+) True LOC103028981
XM_015606155.2 mRNA downstream 124463 6974915 ~ 7073508 (+) True hhat
XM_022672650.1 mRNA downstream 376038 7226490 ~ 7244752 (+) True LOC111193178
TU105595 other upstream 1308219 5452115 ~ 5527965 (+) False LOC103025550
TU105324 other upstream 2538000 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 3416185 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 3419273 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 3419944 3416168 ~ 3416240 (+) True trnav-aac_2
TU105776 other downstream 6957 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 744255 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 805877 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 805877 7656329 ~ 7729001 (+) False fam167b
TU106244 other downstream 1685464 8535916 ~ 8537682 (+) True G78818

Expression Profile